Wall clock time and date at job start Mon Mar 30 2020 03:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48500 * 109.47523 * 240.00106 * 3 2 1 5 5 H 1.48498 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47171 * 119.99914 * 3 2 1 7 7 C 1.37880 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99762 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00415 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.39969 * 66.45503 * 9 7 2 11 11 O 1.42102 * 106.39998 * 293.54314 * 9 7 2 12 12 N 1.65597 * 107.22150 * 179.97438 * 9 7 2 13 13 O 1.41596 * 120.00039 * 64.99773 * 12 9 7 14 14 C 1.42898 * 114.00162 * 179.97438 * 13 12 9 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.53785 * 113.61570 * 274.13969 * 15 14 13 17 17 C 1.53956 * 87.02052 * 220.04627 * 16 15 14 18 18 C 1.53777 * 87.11087 * 25.36196 * 17 16 15 19 19 H 0.97005 * 120.00020 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00227 * 244.99892 * 12 9 7 21 21 H 1.09002 * 109.47259 * 300.00377 * 14 13 12 22 22 H 1.09001 * 109.47074 * 60.00398 * 14 13 12 23 23 H 1.09001 * 112.85054 * 45.33390 * 15 14 13 24 24 H 1.09000 * 113.61195 * 334.56762 * 16 15 14 25 25 H 1.09001 * 113.61520 * 105.46896 * 16 15 14 26 26 H 1.09005 * 113.53676 * 270.80967 * 17 16 15 27 27 H 1.08993 * 113.66514 * 139.93360 * 17 16 15 28 28 H 1.09011 * 113.61618 * 220.09268 * 18 17 16 29 29 H 1.09000 * 113.69499 * 89.19666 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 16 1.1234 -2.7200 -0.0019 10 8 0.4517 -2.7944 -1.2519 11 8 0.4508 -2.7961 1.2475 12 7 2.2481 -3.9355 -0.0030 13 8 3.1093 -4.1041 1.1082 14 6 4.0278 -5.1904 0.9721 15 6 4.9028 -5.2783 2.2241 16 6 6.1417 -4.3686 2.1750 17 6 6.9180 -5.5256 2.8299 18 6 5.8729 -6.4715 2.2153 19 1 -0.4850 0.8401 0.0004 20 1 2.3169 -4.5319 -0.7648 21 1 3.4741 -6.1213 0.8501 22 1 4.6585 -5.0256 0.0985 23 1 4.3308 -5.1875 3.1475 24 1 6.4739 -4.1376 1.1629 25 1 6.0593 -3.4841 2.8068 26 1 6.8979 -5.5016 3.9195 27 1 7.9214 -5.6626 2.4270 28 1 5.5736 -7.2824 2.8795 29 1 6.1303 -6.8175 1.2142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711131138.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:54 Heat of formation + Delta-G solvation = -73.912119 kcal Electronic energy + Delta-G solvation = -14899.782358 eV Core-core repulsion = 12145.182660 eV Total energy + Delta-G solvation = -2754.599698 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.02627 -36.55330 -35.23105 -33.99821 -33.06351 -30.59276 -27.63472 -26.07706 -25.64787 -22.74036 -19.56781 -18.95569 -17.76070 -17.36613 -16.21021 -15.74107 -15.03579 -14.89649 -14.46306 -13.91821 -13.71440 -13.09697 -12.51934 -12.30538 -11.99180 -11.72465 -11.29820 -11.15896 -11.07653 -10.83748 -10.58763 -10.54853 -10.35494 -10.31999 -10.19832 -10.15329 -9.19909 -8.90923 -8.33852 -6.66677 -5.26792 1.95430 3.12730 3.15500 3.20933 3.66251 4.16540 4.52421 4.56045 4.68169 4.71904 4.79749 5.14937 5.36426 5.45527 5.57595 5.61514 5.66761 5.78772 5.82867 5.91047 6.04263 6.17766 6.41829 6.55179 6.78388 7.37198 8.04287 8.08690 8.92952 10.27917 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.030453 B = 0.007384 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.242506 B = 3790.969046 C = 4461.990689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.132 3.868 3 Si 0.924 3.076 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -1.011 5.011 8 H 0.105 0.895 9 S 2.725 3.275 10 O -0.989 6.989 11 O -0.989 6.989 12 N -1.004 6.004 13 O -0.126 6.126 14 C 0.045 3.955 15 C -0.107 4.107 16 C -0.136 4.136 17 C -0.142 4.142 18 C -0.130 4.130 19 H 0.292 0.708 20 H 0.399 0.601 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.817 -8.818 2.435 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.086 4.086 3 Si 0.748 3.252 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.188 1.188 7 C -1.145 5.145 8 H 0.123 0.877 9 S 2.824 3.176 10 O -0.980 6.980 11 O -0.980 6.980 12 N -0.796 5.796 13 O -0.137 6.137 14 C -0.034 4.034 15 C -0.127 4.127 16 C -0.174 4.174 17 C -0.180 4.180 18 C -0.168 4.168 19 H 0.102 0.898 20 H 0.231 0.769 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.121 0.879 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.670 -8.656 2.773 14.016 hybrid contribution 1.137 0.703 -0.492 1.424 sum 11.806 -7.952 2.281 14.416 Atomic orbital electron populations 1.69881 1.06769 1.30882 1.40315 1.24768 0.94502 1.00848 0.88492 0.86152 0.79821 0.79476 0.79785 1.18890 1.20159 1.18813 1.30446 1.06287 1.11279 1.66474 0.87699 1.00419 0.71336 0.72890 0.72931 1.93441 1.71521 1.87282 1.45760 1.93357 1.72340 1.86663 1.45593 1.58940 1.49850 1.51408 1.19376 1.90369 1.47015 1.51550 1.24719 1.22905 0.91554 0.90637 0.98285 1.22547 0.94400 0.97445 0.98329 1.23024 0.95363 0.97374 1.01598 1.22838 0.97938 0.96834 1.00380 1.22895 0.96132 0.96316 1.01461 0.89801 0.76924 0.92616 0.92474 0.87914 0.89885 0.90860 0.90130 0.91462 0.91192 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.20 13.19 55.43 0.73 -24.47 15 2 C 0.13 3.74 5.46 -17.82 -0.10 3.64 15 3 Si 0.92 20.94 29.54 -169.99 -5.02 15.92 15 4 H -0.26 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 6 H -0.26 -5.81 7.11 56.52 0.40 -5.40 15 7 C -1.01 -28.66 9.74 30.60 0.30 -28.36 15 8 H 0.10 2.76 7.81 -52.48 -0.41 2.35 15 9 S 2.73 74.42 5.28 -107.50 -0.57 73.85 15 10 O -0.99 -28.71 18.02 -57.17 -1.03 -29.74 15 11 O -0.99 -30.18 18.01 -57.88 -1.04 -31.22 15 12 N -1.00 -21.43 6.91 60.35 0.42 -21.01 15 13 O -0.13 -2.55 11.50 -11.47 -0.13 -2.68 15 14 C 0.04 0.65 6.05 37.16 0.22 0.87 15 15 C -0.11 -1.32 4.00 -89.81 -0.36 -1.68 15 16 C -0.14 -1.57 7.65 -25.82 -0.20 -1.77 15 17 C -0.14 -1.30 8.09 -25.83 -0.21 -1.51 15 18 C -0.13 -1.22 7.65 -25.92 -0.20 -1.41 15 19 H 0.29 7.77 8.31 -40.82 -0.34 7.44 15 20 H 0.40 7.00 8.67 -34.47 -0.30 6.70 15 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 22 H 0.06 0.75 7.88 -51.93 -0.41 0.34 15 23 H 0.10 1.32 8.14 -51.93 -0.42 0.90 15 24 H 0.08 0.94 7.92 -51.93 -0.41 0.53 15 25 H 0.07 0.89 8.14 -51.93 -0.42 0.46 15 26 H 0.08 0.69 8.14 -51.93 -0.42 0.26 15 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15 28 H 0.07 0.59 8.14 -51.92 -0.42 0.17 15 29 H 0.08 0.70 8.10 -51.93 -0.42 0.27 15 LS Contribution 269.95 15.07 4.07 4.07 Total: -1.00 -35.27 269.95 -6.74 -42.01 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -3.62 Total: 3.51 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: -0.54 Total: -30.23 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 1.15 Total: -45.49 kcal Atomic # 8 Polarization: -61.45 SS G_CDS: -2.20 Total: -63.65 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 74.42 SS G_CDS: -0.57 Total: 73.85 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -35.27 -6.74 -42.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711131138.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.901 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds