Wall clock time and date at job start Mon Mar 30 2020 03:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00021 * 2 1 4 4 H 1.08994 * 112.90829 * 18.74852 * 3 2 1 5 5 C 1.53786 * 113.61282 * 247.50072 * 3 2 1 6 6 C 1.53787 * 87.07926 * 270.88366 * 5 3 2 7 7 C 1.53776 * 87.08271 * 334.56731 * 6 5 3 8 8 H 1.09004 * 113.61943 * 270.80165 * 7 6 5 9 9 N 1.46498 * 113.61522 * 139.97810 * 7 6 5 10 10 S 1.65608 * 119.99786 * 114.50432 * 9 7 6 11 11 O 1.42094 * 106.40389 * 311.46230 * 10 9 7 12 12 O 1.42100 * 106.39853 * 178.54332 * 10 9 7 13 13 C 1.76202 * 107.21534 * 65.00540 * 10 9 7 14 14 H 1.07994 * 119.99832 * 359.97438 * 13 10 9 15 15 C 1.37875 * 119.99608 * 180.02562 * 13 10 9 16 16 N 1.31513 * 120.00380 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99848 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47261 * 239.99776 * 17 15 13 20 20 H 1.48500 * 109.47454 * 119.99769 * 17 15 13 21 21 H 1.09003 * 109.46576 * 300.00009 * 1 2 3 22 22 H 1.09001 * 109.46929 * 59.99503 * 1 2 3 23 23 H 1.08996 * 109.47175 * 180.02562 * 1 2 3 24 24 H 1.09002 * 113.61118 * 156.33688 * 5 3 2 25 25 H 1.08989 * 113.69451 * 25.44180 * 5 3 2 26 26 H 1.09008 * 113.61112 * 220.02003 * 6 5 3 27 27 H 1.09001 * 113.61413 * 89.12028 * 6 5 3 28 28 H 0.96997 * 120.00113 * 294.50775 * 9 7 6 29 29 H 0.97001 * 119.99667 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0798 0.3227 5 6 2.7534 1.6489 -1.3018 6 6 4.0061 1.0330 -0.6566 7 6 3.3756 1.3719 0.7044 8 1 3.6324 2.3665 1.0691 9 7 3.5657 0.3287 1.7153 10 16 4.4875 0.6339 3.0569 11 8 5.6960 1.2169 2.5893 12 8 4.4489 -0.5465 3.8471 13 6 3.6596 1.8817 3.9855 14 1 2.7250 2.2891 3.6294 15 6 4.2056 2.3386 5.1662 16 7 5.3440 1.8427 5.5996 17 14 3.3277 3.6609 6.1511 18 1 2.0752 4.0482 5.4536 19 1 4.2093 4.8489 6.2808 20 1 3.0009 3.1373 7.5018 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 2.8388 2.7198 -1.4863 25 1 2.3935 1.0972 -2.1702 26 1 4.9215 1.5875 -0.8640 27 1 4.1084 -0.0372 -0.8361 28 1 3.1518 -0.5407 1.5988 29 1 5.7997 1.1558 5.0883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724400931.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:27 Heat of formation + Delta-G solvation = -119.987968 kcal Electronic energy + Delta-G solvation = -15446.270748 eV Core-core repulsion = 12689.673052 eV Total energy + Delta-G solvation = -2756.597697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.46378 -35.93593 -35.38469 -34.31919 -33.21338 -32.04871 -26.84399 -25.52237 -24.61885 -24.16461 -19.73753 -19.25307 -18.03225 -16.67297 -16.49610 -15.66742 -15.10303 -14.65562 -14.31073 -13.98654 -13.76879 -13.56266 -12.76522 -12.44830 -12.34207 -11.75103 -11.53220 -11.07134 -10.97919 -10.71063 -10.68890 -10.53901 -10.44727 -10.34190 -10.12761 -9.41194 -9.16989 -8.87036 -8.26413 -7.16460 -5.37245 2.22128 3.23210 3.25295 3.41461 3.68459 4.16312 4.58118 4.70225 4.74484 4.78248 5.06512 5.16569 5.36162 5.39340 5.51271 5.57113 5.65520 5.72002 5.86364 6.16349 6.24694 6.26883 6.42708 6.79734 7.29361 7.62272 7.93331 8.06729 8.64540 10.21728 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.029721 B = 0.009069 C = 0.008244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.865763 B = 3086.861942 C = 3395.710301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.055 3.945 4 H 0.076 0.924 5 C -0.160 4.160 6 C -0.148 4.148 7 C 0.144 3.856 8 H 0.121 0.879 9 N -1.109 6.109 10 S 2.688 3.312 11 O -1.013 7.013 12 O -1.015 7.015 13 C -1.086 5.086 14 H 0.102 0.898 15 C 0.089 3.911 16 N -0.846 5.846 17 Si 1.086 2.914 18 H -0.280 1.280 19 H -0.274 1.274 20 H -0.275 1.275 21 H 0.044 0.956 22 H 0.038 0.962 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.410 0.590 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.065 1.108 -11.263 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C -0.005 4.005 4 H 0.094 0.906 5 C -0.198 4.198 6 C -0.188 4.188 7 C 0.035 3.965 8 H 0.139 0.861 9 N -0.862 5.862 10 S 2.789 3.211 11 O -1.003 7.003 12 O -1.005 7.005 13 C -1.220 5.220 14 H 0.120 0.880 15 C -0.130 4.130 16 N -0.475 5.475 17 Si 0.909 3.091 18 H -0.206 1.206 19 H -0.200 1.200 20 H -0.200 1.200 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.242 0.758 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.907 1.519 -9.696 12.603 hybrid contribution -1.082 -0.677 -1.435 1.921 sum -8.989 0.842 -11.131 14.332 Atomic orbital electron populations 1.22808 0.81168 1.02621 0.99933 1.87815 1.19442 1.26365 1.94459 1.23659 0.95195 0.85344 0.96343 0.90569 1.23305 0.97733 1.01264 0.97496 1.23410 0.97467 1.01793 0.96144 1.22402 0.93572 0.92785 0.87776 0.86124 1.55455 1.71081 1.21582 1.38114 1.01033 0.73382 0.74888 0.71758 1.93418 1.45979 1.79507 1.81398 1.93423 1.87515 1.51242 1.68297 1.31520 1.23712 1.43819 1.22961 0.87981 1.25966 0.93992 0.98611 0.94388 1.70781 1.13553 1.23499 1.39699 0.83386 0.75336 0.74703 0.75636 1.20565 1.19987 1.19993 0.93741 0.94289 0.89716 0.89172 0.90707 0.90839 0.89542 0.75781 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.85 101.05 1.10 1.44 15 2 O -0.36 -5.27 9.62 -35.23 -0.34 -5.61 15 3 C 0.06 0.78 4.31 -25.91 -0.11 0.67 15 4 H 0.08 0.96 7.87 -51.93 -0.41 0.56 15 5 C -0.16 -1.93 7.91 -25.91 -0.21 -2.13 15 6 C -0.15 -2.23 7.81 -25.92 -0.20 -2.43 15 7 C 0.14 2.53 4.29 -67.12 -0.29 2.24 15 8 H 0.12 2.14 8.06 -51.93 -0.42 1.72 15 9 N -1.11 -22.94 5.74 -4.20 -0.02 -22.97 15 10 S 2.69 71.48 4.33 -107.50 -0.47 71.01 15 11 O -1.01 -29.22 17.40 -57.17 -0.99 -30.22 15 12 O -1.01 -29.84 17.64 -57.17 -1.01 -30.85 15 13 C -1.09 -30.08 9.72 30.60 0.30 -29.79 15 14 H 0.10 2.60 7.81 -52.49 -0.41 2.19 15 15 C 0.09 2.54 5.46 -17.82 -0.10 2.44 15 16 N -0.85 -26.11 13.66 55.43 0.76 -25.36 15 17 Si 1.09 24.10 29.90 -169.99 -5.08 19.02 15 18 H -0.28 -5.74 7.11 56.52 0.40 -5.33 15 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 21 H 0.04 0.48 8.14 -51.93 -0.42 0.06 15 22 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 15 23 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 25 H 0.07 0.83 8.14 -51.94 -0.42 0.41 15 26 H 0.07 1.07 8.14 -51.92 -0.42 0.65 15 27 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 28 H 0.41 7.86 8.05 -34.48 -0.28 7.58 15 29 H 0.28 8.81 6.52 -40.82 -0.27 8.55 15 LS Contribution 265.28 15.07 4.00 4.00 Total: -1.00 -35.13 265.28 -6.21 -41.34 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -3.54 Total: 7.20 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 0.49 Total: -27.56 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.73 Total: -48.32 kcal Atomic # 8 Polarization: -64.33 SS G_CDS: -2.34 Total: -66.68 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.08 Total: 19.02 kcal Atomic # 16 Polarization: 71.48 SS G_CDS: -0.47 Total: 71.01 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -35.13 -6.21 -41.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724400931.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.647 kcal (2) G-P(sol) polarization free energy of solvation -35.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds