Wall clock time and date at job start Mon Mar 30 2020 03:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00021 * 2 1 4 4 H 1.08994 * 112.90829 * 18.74852 * 3 2 1 5 5 C 1.53786 * 113.61282 * 247.50072 * 3 2 1 6 6 C 1.53787 * 87.07926 * 270.88366 * 5 3 2 7 7 C 1.53776 * 87.08271 * 334.56731 * 6 5 3 8 8 H 1.09004 * 113.61943 * 270.80165 * 7 6 5 9 9 N 1.46498 * 113.61522 * 139.97810 * 7 6 5 10 10 S 1.65608 * 119.99786 * 114.50432 * 9 7 6 11 11 O 1.42094 * 106.40389 * 311.46230 * 10 9 7 12 12 O 1.42100 * 106.39853 * 178.54332 * 10 9 7 13 13 C 1.76202 * 107.21534 * 65.00540 * 10 9 7 14 14 H 1.07994 * 119.99832 * 359.97438 * 13 10 9 15 15 C 1.37875 * 119.99608 * 180.02562 * 13 10 9 16 16 N 1.31513 * 120.00380 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99848 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47261 * 239.99776 * 17 15 13 20 20 H 1.48500 * 109.47454 * 119.99769 * 17 15 13 21 21 H 1.09003 * 109.46576 * 300.00009 * 1 2 3 22 22 H 1.09001 * 109.46929 * 59.99503 * 1 2 3 23 23 H 1.08996 * 109.47175 * 180.02562 * 1 2 3 24 24 H 1.09002 * 113.61118 * 156.33688 * 5 3 2 25 25 H 1.08989 * 113.69451 * 25.44180 * 5 3 2 26 26 H 1.09008 * 113.61112 * 220.02003 * 6 5 3 27 27 H 1.09001 * 113.61413 * 89.12028 * 6 5 3 28 28 H 0.96997 * 120.00113 * 294.50775 * 9 7 6 29 29 H 0.97001 * 119.99667 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0798 0.3227 5 6 2.7534 1.6489 -1.3018 6 6 4.0061 1.0330 -0.6566 7 6 3.3756 1.3719 0.7044 8 1 3.6324 2.3665 1.0691 9 7 3.5657 0.3287 1.7153 10 16 4.4875 0.6339 3.0569 11 8 5.6960 1.2169 2.5893 12 8 4.4489 -0.5465 3.8471 13 6 3.6596 1.8817 3.9855 14 1 2.7250 2.2891 3.6294 15 6 4.2056 2.3386 5.1662 16 7 5.3440 1.8427 5.5996 17 14 3.3277 3.6609 6.1511 18 1 2.0752 4.0482 5.4536 19 1 4.2093 4.8489 6.2808 20 1 3.0009 3.1373 7.5018 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 2.8388 2.7198 -1.4863 25 1 2.3935 1.0972 -2.1702 26 1 4.9215 1.5875 -0.8640 27 1 4.1084 -0.0372 -0.8361 28 1 3.1518 -0.5407 1.5988 29 1 5.7997 1.1558 5.0883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724400931.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:27 Heat of formation + Delta-G solvation = -149.189127 kcal Electronic energy + Delta-G solvation = -15447.537006 eV Core-core repulsion = 12689.673052 eV Total energy + Delta-G solvation = -2757.863954 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61405 -37.69156 -36.97807 -36.54913 -35.38501 -33.62495 -27.73293 -27.72920 -25.71967 -25.42979 -21.56818 -20.73349 -19.92805 -18.32787 -17.96920 -17.10976 -16.84927 -16.09970 -15.93053 -15.71077 -15.34376 -14.66060 -14.55730 -13.96478 -13.53190 -13.31070 -13.06703 -12.97973 -12.75372 -12.71829 -12.56982 -12.13359 -11.94172 -11.73306 -11.43083 -11.21729 -10.73138 -10.45191 -10.07434 -9.40993 -7.64209 0.17152 1.45877 1.51646 1.74443 2.32937 2.54083 2.59747 2.87272 3.39479 3.57168 3.70907 3.94176 4.07475 4.23132 4.31548 4.49049 4.59251 4.59880 4.87226 4.91264 4.99065 5.10744 5.15394 5.34496 5.46817 5.78713 6.22895 6.36987 6.48700 7.93830 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.029721 B = 0.009069 C = 0.008244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.865763 B = 3086.861942 C = 3395.710301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.386 6.386 3 C 0.061 3.939 4 H 0.095 0.905 5 C -0.137 4.137 6 C -0.153 4.153 7 C 0.111 3.889 8 H 0.114 0.886 9 N -1.095 6.095 10 S 2.694 3.306 11 O -1.044 7.044 12 O -1.052 7.052 13 C -1.096 5.096 14 H 0.123 0.877 15 C 0.033 3.967 16 N -0.878 5.878 17 Si 1.127 2.873 18 H -0.249 1.249 19 H -0.260 1.260 20 H -0.264 1.264 21 H 0.043 0.957 22 H 0.061 0.939 23 H 0.096 0.904 24 H 0.114 0.886 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.417 0.583 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.325 2.465 -12.492 17.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.305 6.305 3 C 0.001 3.999 4 H 0.113 0.887 5 C -0.175 4.175 6 C -0.193 4.193 7 C 0.003 3.997 8 H 0.132 0.868 9 N -0.853 5.853 10 S 2.796 3.204 11 O -1.033 7.033 12 O -1.042 7.042 13 C -1.231 5.231 14 H 0.141 0.859 15 C -0.177 4.177 16 N -0.508 5.508 17 Si 0.941 3.059 18 H -0.172 1.172 19 H -0.185 1.185 20 H -0.188 1.188 21 H 0.062 0.938 22 H 0.079 0.921 23 H 0.115 0.885 24 H 0.133 0.867 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.252 0.748 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.171 2.853 -10.960 15.222 hybrid contribution -0.415 -1.159 -1.151 1.685 sum -10.586 1.695 -12.111 16.174 Atomic orbital electron populations 1.23023 0.79301 1.03867 1.00965 1.87782 1.21506 1.26617 1.94583 1.23627 0.93884 0.85920 0.96474 0.88741 1.23254 0.94607 1.02712 0.96885 1.23433 0.99007 1.01863 0.94967 1.22973 0.97495 0.91551 0.87716 0.86827 1.54925 1.70396 1.22853 1.37118 1.00529 0.73467 0.74066 0.72338 1.93368 1.48022 1.79903 1.82042 1.93359 1.88127 1.52475 1.70207 1.31862 1.24394 1.43742 1.23060 0.85909 1.27870 0.93666 1.00240 0.95951 1.70940 1.15296 1.24410 1.40186 0.82993 0.75658 0.72285 0.74947 1.17226 1.18489 1.18839 0.93843 0.92065 0.88525 0.86748 0.88970 0.90913 0.90063 0.74845 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.85 113.37 1.23 1.69 15 2 O -0.39 -10.28 9.62 -148.98 -1.43 -11.71 15 3 C 0.06 1.57 4.31 31.12 0.13 1.70 15 4 H 0.09 2.05 7.87 -2.39 -0.02 2.04 15 5 C -0.14 -2.82 7.91 31.12 0.25 -2.58 15 6 C -0.15 -4.36 7.81 31.12 0.24 -4.12 15 7 C 0.11 3.75 4.29 45.52 0.20 3.95 15 8 H 0.11 3.95 8.06 -2.39 -0.02 3.93 15 9 N -1.09 -45.22 5.74 -167.19 -0.96 -46.18 15 10 S 2.69 146.21 4.33 -56.49 -0.24 145.96 15 11 O -1.04 -61.98 17.40 -128.00 -2.23 -64.21 15 12 O -1.05 -63.77 17.64 -128.00 -2.26 -66.03 15 13 C -1.10 -60.58 9.72 67.73 0.66 -59.92 15 14 H 0.12 6.07 7.81 -2.91 -0.02 6.05 15 15 C 0.03 1.87 5.46 84.65 0.46 2.33 15 16 N -0.88 -55.31 13.66 21.45 0.29 -55.01 15 17 Si 1.13 46.65 29.90 68.60 2.05 48.70 15 18 H -0.25 -8.96 7.11 99.48 0.71 -8.25 15 19 H -0.26 -10.13 7.11 99.48 0.71 -9.43 15 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 15 21 H 0.04 0.82 8.14 -2.39 -0.02 0.80 15 22 H 0.06 0.89 8.14 -2.39 -0.02 0.87 15 23 H 0.10 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.11 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 15 26 H 0.07 2.04 8.14 -2.38 -0.02 2.02 15 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 28 H 0.42 15.98 8.05 -96.74 -0.78 15.20 15 29 H 0.26 16.94 6.52 -92.71 -0.60 16.34 15 Total: -1.00 -77.11 265.28 -1.07 -78.18 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.54 Total: 27.24 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 3.17 Total: -56.95 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -0.67 Total: -101.19 kcal Atomic # 8 Polarization: -136.03 SS G_CDS: -5.92 Total: -141.95 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.05 Total: 48.70 kcal Atomic # 16 Polarization: 146.21 SS G_CDS: -0.24 Total: 145.96 kcal Total: -77.11 -1.07 -78.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724400931.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.006 kcal (2) G-P(sol) polarization free energy of solvation -77.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds