Wall clock time and date at job start Mon Mar 30 2020 03:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99907 * 2 1 4 4 H 1.48500 * 109.47358 * 266.77851 * 3 2 1 5 5 H 1.48498 * 109.47113 * 26.78533 * 3 2 1 6 6 H 1.48505 * 109.46754 * 146.78349 * 3 2 1 7 7 C 1.38810 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00152 * 342.22474 * 7 2 1 9 9 N 1.36936 * 119.99657 * 162.21823 * 7 2 1 10 10 C 1.47244 * 121.34195 * 153.19717 * 9 7 2 11 11 C 1.52785 * 107.88476 * 115.73143 * 10 9 7 12 12 C 1.50628 * 110.86310 * 47.52062 * 11 10 9 13 13 C 1.39032 * 117.51583 * 160.52092 * 12 11 10 14 14 C 1.38210 * 120.61763 * 179.55623 * 13 12 11 15 15 O 1.35992 * 120.15948 * 179.83970 * 14 13 12 16 16 C 1.39202 * 119.67061 * 359.55763 * 14 13 12 17 17 O 1.35994 * 120.22175 * 180.47564 * 16 14 13 18 18 C 1.38254 * 119.56061 * 0.46082 * 16 14 13 19 19 C 1.37706 * 122.84347 * 339.94252 * 12 11 10 20 20 C 1.46671 * 121.34584 * 333.21558 * 9 7 2 21 21 H 0.96999 * 120.00180 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.77383 * 235.33306 * 10 9 7 23 23 H 1.08998 * 109.77080 * 356.13801 * 10 9 7 24 24 H 1.08997 * 109.19609 * 167.87369 * 11 10 9 25 25 H 1.08994 * 109.19875 * 287.20998 * 11 10 9 26 26 H 1.07989 * 119.68764 * 359.29299 * 13 12 11 27 27 H 0.96706 * 114.00066 * 269.71835 * 15 14 13 28 28 H 0.96697 * 113.99726 * 89.99862 * 17 16 14 29 29 H 1.07997 * 119.72784 * 179.81712 * 18 16 14 30 30 H 1.09008 * 109.42979 * 104.26661 * 20 9 7 31 31 H 1.08997 * 109.39476 * 344.38566 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5658 2.0071 -1.3978 5 1 1.4152 2.6713 0.6309 6 1 3.5121 1.4607 0.7670 7 6 2.0102 -1.2022 -0.0005 8 1 1.5088 -2.1153 0.2846 9 7 3.3305 -1.2303 -0.3627 10 6 4.2421 -2.2689 0.1456 11 6 4.7102 -3.1055 -1.0441 12 6 5.1554 -2.2215 -2.1795 13 6 5.9782 -2.7854 -3.1480 14 6 6.4171 -2.0350 -4.2225 15 8 7.2243 -2.5951 -5.1628 16 6 6.0239 -0.7049 -4.3405 17 8 6.4413 0.0410 -5.3983 18 6 5.2061 -0.1471 -3.3754 19 6 4.7729 -0.9036 -2.2942 20 6 3.8937 -0.2270 -1.2723 21 1 -0.4850 0.8400 0.0004 22 1 5.1003 -1.8019 0.6287 23 1 3.7166 -2.9037 0.8590 24 1 5.5430 -3.7362 -0.7331 25 1 3.8893 -3.7372 -1.3831 26 1 6.2806 -3.8181 -3.0576 27 1 8.1685 -2.5062 -4.9740 28 1 5.8497 0.0055 -6.1624 29 1 4.9019 0.8854 -3.4627 30 1 4.4856 0.4884 -0.7013 31 1 3.0837 0.2962 -1.7804 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033639531.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:31 Heat of formation + Delta-G solvation = -35.347868 kcal Electronic energy + Delta-G solvation = -16565.237930 eV Core-core repulsion = 13812.699647 eV Total energy + Delta-G solvation = -2752.538283 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.16383 -37.86274 -36.81724 -35.05662 -32.55866 -31.60589 -29.53472 -28.39631 -25.35032 -23.55302 -22.32394 -21.96015 -19.75922 -18.31610 -17.61917 -16.72910 -15.86519 -15.50699 -15.22683 -14.66160 -14.35498 -13.92928 -13.54067 -13.43206 -12.60430 -12.45428 -12.44440 -12.11862 -11.80786 -11.57711 -10.96908 -10.82661 -10.45491 -10.24924 -10.10063 -9.95742 -9.57414 -8.73372 -8.50561 -7.98925 -7.07962 -6.00176 -3.39345 1.37082 1.44261 3.25158 3.42838 3.44360 3.64037 4.20708 4.41731 4.46245 4.86805 5.04430 5.15779 5.31082 5.45547 5.59239 5.76646 5.87403 5.90011 6.09702 6.16564 6.23135 6.33814 6.40091 6.48873 6.59481 6.67228 6.91283 7.05175 7.52126 7.84201 7.87139 8.26793 8.83469 9.63536 10.01589 11.15806 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.032786 B = 0.008370 C = 0.007137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.824610 B = 3344.600460 C = 3922.054682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.259 4.259 8 H 0.090 0.910 9 N -0.605 5.605 10 C 0.144 3.856 11 C -0.100 4.100 12 C -0.050 4.050 13 C -0.136 4.136 14 C 0.066 3.934 15 O -0.495 6.495 16 C 0.071 3.929 17 O -0.496 6.496 18 C -0.133 4.133 19 C -0.066 4.066 20 C 0.155 3.845 21 H 0.264 0.736 22 H 0.032 0.968 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.127 0.873 27 H 0.385 0.615 28 H 0.387 0.613 29 H 0.129 0.871 30 H 0.042 0.958 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.105 -3.194 -6.606 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.713 3.287 4 H -0.213 1.213 5 H -0.229 1.229 6 H -0.196 1.196 7 C -0.387 4.387 8 H 0.107 0.893 9 N -0.328 5.328 10 C 0.018 3.982 11 C -0.138 4.138 12 C -0.051 4.051 13 C -0.155 4.155 14 C 0.022 3.978 15 O -0.304 6.304 16 C 0.026 3.974 17 O -0.305 6.305 18 C -0.152 4.152 19 C -0.068 4.068 20 C 0.029 3.971 21 H 0.074 0.926 22 H 0.050 0.950 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.145 0.855 27 H 0.240 0.760 28 H 0.242 0.758 29 H 0.147 0.853 30 H 0.060 0.940 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.842 -3.114 -6.467 14.712 hybrid contribution 0.505 1.039 -0.336 1.203 sum 13.348 -2.075 -6.803 15.124 Atomic orbital electron populations 1.69795 1.05622 1.26668 1.53002 1.25279 0.95292 0.97583 0.99397 0.87042 0.79617 0.84578 0.77469 1.21325 1.22861 1.19613 1.18897 0.83167 0.94758 1.41843 0.89260 1.44312 1.07443 1.30861 1.50179 1.20969 0.93134 0.90795 0.93260 1.21009 1.00427 0.97345 0.95063 1.19517 0.95710 0.93718 0.96107 1.21375 1.00531 1.00118 0.93442 1.18624 0.98202 0.90079 0.90927 1.84791 1.20225 1.79191 1.46231 1.18646 0.99092 0.88807 0.90813 1.84761 1.51608 1.69232 1.24935 1.21330 0.98094 1.00760 0.95064 1.20424 0.96805 0.93697 0.95849 1.20417 0.95122 0.91871 0.89675 0.92608 0.94992 0.90888 0.91424 0.90330 0.85461 0.76048 0.75788 0.85303 0.94048 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.54 13.97 55.49 0.78 -26.77 16 2 C 0.02 0.67 5.29 -17.43 -0.09 0.58 16 3 Si 0.88 21.98 24.16 -169.99 -4.11 17.88 16 4 H -0.29 -6.78 6.44 56.52 0.36 -6.42 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.27 -6.61 6.60 56.52 0.37 -6.24 16 7 C -0.26 -7.13 10.14 -15.06 -0.15 -7.28 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.60 -14.27 2.75 -173.93 -0.48 -14.75 16 10 C 0.14 2.75 6.52 -3.75 -0.02 2.73 16 11 C -0.10 -1.63 5.86 -28.03 -0.16 -1.80 16 12 C -0.05 -0.87 5.77 -104.56 -0.60 -1.48 16 13 C -0.14 -2.07 9.52 -39.30 -0.37 -2.45 16 14 C 0.07 1.01 6.71 -39.23 -0.26 0.74 16 15 O -0.50 -6.49 13.30 -33.91 -0.45 -6.94 16 16 C 0.07 1.13 6.72 -39.22 -0.26 0.86 16 17 O -0.50 -6.88 13.31 -33.92 -0.45 -7.33 16 18 C -0.13 -2.30 9.55 -39.34 -0.38 -2.67 16 19 C -0.07 -1.26 5.82 -104.51 -0.61 -1.87 16 20 C 0.15 3.41 3.97 -5.04 -0.02 3.39 16 21 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.34 7.96 -51.93 -0.41 0.93 16 24 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.13 1.65 8.05 -52.49 -0.42 1.23 16 27 H 0.38 3.31 9.07 45.56 0.41 3.73 16 28 H 0.39 3.77 9.06 45.56 0.41 4.18 16 29 H 0.13 2.09 8.05 -52.49 -0.42 1.67 16 30 H 0.04 0.92 6.41 -51.92 -0.33 0.58 16 31 H 0.09 2.08 4.97 -51.93 -0.26 1.82 16 LS Contribution 257.82 15.07 3.89 3.89 Total: -1.00 -32.33 257.82 -5.68 -38.02 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -1.91 Total: 5.25 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -2.94 Total: -9.24 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.30 Total: -41.52 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.90 Total: -14.27 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.11 Total: 17.88 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.33 -5.68 -38.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033639531.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.670 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds