Wall clock time and date at job start Mon Mar 30 2020 03:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38334 * 119.90909 * 2 1 4 4 C 1.38055 * 120.08769 * 180.27770 * 3 2 1 5 5 C 1.39075 * 119.90764 * 359.46405 * 4 3 2 6 6 N 1.39301 * 120.08799 * 180.29873 * 5 4 3 7 7 C 1.36855 * 120.00023 * 359.97438 * 6 5 4 8 8 H 1.07993 * 119.99582 * 19.00768 * 7 6 5 9 9 C 1.38789 * 119.99812 * 199.00624 * 7 6 5 10 10 N 1.31590 * 120.00420 * 19.91292 * 9 7 6 11 11 Si 1.86803 * 119.99906 * 199.90782 * 9 7 6 12 12 H 1.48502 * 109.46759 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46904 * 120.00292 * 11 9 7 14 14 H 1.48496 * 109.47323 * 240.00364 * 11 9 7 15 15 C 1.46499 * 119.99993 * 180.02562 * 6 5 4 16 16 C 1.50696 * 109.47183 * 83.79742 * 15 6 5 17 17 O 1.20824 * 120.00390 * 359.97438 * 16 15 6 18 18 O 1.34233 * 120.00193 * 180.02562 * 16 15 6 19 19 C 1.39077 * 119.82664 * 0.27866 * 5 4 3 20 20 C 1.38053 * 119.90488 * 0.02562 * 19 5 4 21 21 H 1.08999 * 109.47319 * 270.23736 * 1 2 3 22 22 H 1.09001 * 109.46837 * 30.23299 * 1 2 3 23 23 H 1.08999 * 109.47096 * 150.23645 * 1 2 3 24 24 H 1.08004 * 119.95996 * 0.02562 * 3 2 1 25 25 H 1.07996 * 120.04533 * 179.73446 * 4 3 2 26 26 H 0.96993 * 120.00287 * 179.97438 * 10 9 7 27 27 H 1.09000 * 109.47301 * 203.79664 * 15 6 5 28 28 H 1.09001 * 109.47188 * 323.79338 * 15 6 5 29 29 H 0.96704 * 117.00106 * 179.97438 * 18 16 15 30 30 H 1.07999 * 120.05311 * 180.02562 * 19 5 4 31 31 H 1.08004 * 119.95545 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1991 0.0000 4 6 3.5773 1.2034 -0.0058 5 6 4.2745 0.0001 -0.0004 6 7 5.6675 0.0001 0.0001 7 6 6.3518 1.1852 -0.0053 8 1 5.8559 2.0964 0.2948 9 6 7.6831 1.2161 -0.3964 10 7 8.1797 0.2345 -1.1186 11 14 8.7701 2.6512 0.1022 12 1 7.9778 3.6161 0.9062 13 1 9.9097 2.1508 0.9121 14 1 9.2868 3.3270 -1.1149 15 6 6.4000 -1.2686 0.0053 16 6 6.5187 -1.7859 -1.4051 17 8 6.0402 -1.1594 -2.3207 18 8 7.1553 -2.9433 -1.6442 19 6 3.5774 -1.2033 0.0050 20 6 2.1968 -1.1990 0.0044 21 1 -0.3634 0.0043 1.0276 22 1 -0.3633 0.8879 -0.5175 23 1 -0.3633 -0.8921 -0.5101 24 1 1.6546 2.1332 0.0004 25 1 4.1151 2.1399 -0.0101 26 1 9.1099 0.2563 -1.3923 27 1 7.3959 -1.1116 0.4197 28 1 5.8634 -1.9956 0.6150 29 1 7.2056 -3.2346 -2.5650 30 1 4.1151 -2.1399 0.0097 31 1 1.6546 -2.1330 0.0090 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037474226.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:22 Heat of formation + Delta-G solvation = -52.146864 kcal Electronic energy + Delta-G solvation = -16651.010279 eV Core-core repulsion = 13897.743537 eV Total energy + Delta-G solvation = -2753.266742 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.33040 -38.26658 -35.98405 -34.70182 -32.38542 -30.51658 -30.03474 -27.78053 -25.89701 -23.47707 -21.82059 -20.70205 -19.65544 -17.37314 -17.00192 -16.54128 -15.53599 -14.65314 -14.55742 -14.32159 -14.05948 -13.22868 -13.10618 -12.98374 -12.52807 -12.40630 -11.76747 -11.52739 -11.39606 -11.35388 -10.98856 -10.68519 -10.52753 -10.39534 -10.26554 -9.83246 -9.68279 -9.16037 -8.52315 -7.98045 -6.68769 -6.43923 -3.79634 2.44086 2.52087 3.12515 3.17757 3.22464 3.60095 3.94075 4.18275 4.66766 4.81999 5.11565 5.65143 5.73519 5.89890 5.97692 6.05524 6.13447 6.30714 6.38400 6.48258 6.52598 6.66972 6.82664 7.05276 7.29911 7.39838 7.47207 7.58109 7.62556 7.77359 8.09761 8.54347 9.08812 9.24735 9.50052 10.57402 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.009567 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.085059 B = 2926.075115 C = 3847.747271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.207 4.207 3 C -0.067 4.067 4 C -0.202 4.202 5 C 0.219 3.781 6 N -0.438 5.438 7 C -0.303 4.303 8 H 0.103 0.897 9 C 0.023 3.977 10 N -0.879 5.879 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.283 1.283 15 C 0.160 3.840 16 C 0.487 3.513 17 O -0.501 6.501 18 O -0.538 6.538 19 C -0.231 4.231 20 C -0.064 4.064 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.103 0.897 25 H 0.117 0.883 26 H 0.270 0.730 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.390 0.610 30 H 0.102 0.898 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.562 -3.103 2.784 6.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.211 4.211 3 C -0.086 4.086 4 C -0.226 4.226 5 C 0.106 3.894 6 N -0.127 5.127 7 C -0.430 4.430 8 H 0.121 0.879 9 C -0.179 4.179 10 N -0.517 5.517 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.209 1.209 15 C 0.033 3.967 16 C 0.326 3.674 17 O -0.385 6.385 18 O -0.349 6.349 19 C -0.254 4.254 20 C -0.083 4.083 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.121 0.879 25 H 0.135 0.865 26 H 0.081 0.919 27 H 0.140 0.860 28 H 0.094 0.906 29 H 0.246 0.754 30 H 0.120 0.880 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.206 -2.803 2.853 5.804 hybrid contribution 0.885 0.442 -0.744 1.238 sum -3.321 -2.361 2.108 4.588 Atomic orbital electron populations 1.20456 0.92973 1.00871 1.00290 1.19208 0.94551 0.93281 1.14017 1.20542 0.93491 0.96300 0.98270 1.20499 0.93377 0.96790 1.11889 1.17934 0.83802 0.93545 0.94165 1.42289 1.00396 1.04033 1.66012 1.19650 0.93501 0.87414 1.42476 0.87896 1.25242 0.98347 0.98963 0.95398 1.69861 1.15463 1.33776 1.32556 0.85817 0.79672 0.80557 0.78394 1.19225 1.20547 1.20866 1.20517 1.00234 0.86278 0.89683 1.24029 0.73060 0.76416 0.93851 1.90593 1.45709 1.56024 1.46204 1.84538 1.73811 1.41331 1.35260 1.20335 0.94141 0.95744 1.15221 1.20410 0.93226 0.96310 0.98347 0.93280 0.93138 0.93200 0.87909 0.86489 0.91940 0.86029 0.90638 0.75419 0.88039 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 10.01 36.01 0.36 -0.94 16 2 C -0.21 -3.86 5.88 -104.55 -0.62 -4.47 16 3 C -0.07 -1.31 9.69 -39.61 -0.38 -1.69 16 4 C -0.20 -4.52 9.28 -39.34 -0.36 -4.88 16 5 C 0.22 5.16 6.35 -83.84 -0.53 4.63 16 6 N -0.44 -10.85 2.27 -114.42 -0.26 -11.11 16 7 C -0.30 -7.81 9.11 -15.11 -0.14 -7.95 16 8 H 0.10 2.58 6.07 -52.49 -0.32 2.27 16 9 C 0.02 0.59 4.89 -17.45 -0.09 0.51 16 10 N -0.88 -23.09 9.18 55.49 0.51 -22.58 16 11 Si 0.93 19.83 29.60 -169.99 -5.03 14.79 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 C 0.16 3.62 4.85 -5.20 -0.03 3.59 16 16 C 0.49 11.36 6.23 36.00 0.22 11.58 16 17 O -0.50 -13.63 16.71 -18.75 -0.31 -13.94 16 18 O -0.54 -10.33 13.42 -39.27 -0.53 -10.86 16 19 C -0.23 -4.93 9.11 -39.34 -0.36 -5.29 16 20 C -0.06 -1.23 9.69 -39.62 -0.38 -1.61 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 23 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 24 H 0.10 1.74 8.06 -52.48 -0.42 1.31 16 25 H 0.12 2.62 6.11 -52.49 -0.32 2.30 16 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.12 2.83 6.48 -51.93 -0.34 2.49 16 28 H 0.08 1.48 6.55 -51.93 -0.34 1.14 16 29 H 0.39 5.85 9.10 45.56 0.41 6.26 16 30 H 0.10 2.05 6.17 -52.49 -0.32 1.73 16 31 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 266.81 15.07 4.02 4.02 Total: -1.00 -30.31 266.81 -6.37 -36.68 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -2.47 Total: 9.51 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.30 Total: -6.52 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.25 Total: -33.68 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.84 Total: -24.80 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.31 -6.37 -36.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037474226.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.464 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds