Wall clock time and date at job start Mon Mar 30 2020 03:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38334 * 119.90909 * 2 1 4 4 C 1.38055 * 120.08769 * 180.27770 * 3 2 1 5 5 C 1.39075 * 119.90764 * 359.46405 * 4 3 2 6 6 N 1.39301 * 120.08799 * 180.29873 * 5 4 3 7 7 C 1.36855 * 120.00023 * 359.97438 * 6 5 4 8 8 H 1.07993 * 119.99582 * 19.00768 * 7 6 5 9 9 C 1.38789 * 119.99812 * 199.00624 * 7 6 5 10 10 N 1.31590 * 120.00420 * 19.91292 * 9 7 6 11 11 Si 1.86803 * 119.99906 * 199.90782 * 9 7 6 12 12 H 1.48502 * 109.46759 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46904 * 120.00292 * 11 9 7 14 14 H 1.48496 * 109.47323 * 240.00364 * 11 9 7 15 15 C 1.46499 * 119.99993 * 180.02562 * 6 5 4 16 16 C 1.50696 * 109.47183 * 83.79742 * 15 6 5 17 17 O 1.20824 * 120.00390 * 359.97438 * 16 15 6 18 18 O 1.34233 * 120.00193 * 180.02562 * 16 15 6 19 19 C 1.39077 * 119.82664 * 0.27866 * 5 4 3 20 20 C 1.38053 * 119.90488 * 0.02562 * 19 5 4 21 21 H 1.08999 * 109.47319 * 270.23736 * 1 2 3 22 22 H 1.09001 * 109.46837 * 30.23299 * 1 2 3 23 23 H 1.08999 * 109.47096 * 150.23645 * 1 2 3 24 24 H 1.08004 * 119.95996 * 0.02562 * 3 2 1 25 25 H 1.07996 * 120.04533 * 179.73446 * 4 3 2 26 26 H 0.96993 * 120.00287 * 179.97438 * 10 9 7 27 27 H 1.09000 * 109.47301 * 203.79664 * 15 6 5 28 28 H 1.09001 * 109.47188 * 323.79338 * 15 6 5 29 29 H 0.96704 * 117.00106 * 179.97438 * 18 16 15 30 30 H 1.07999 * 120.05311 * 180.02562 * 19 5 4 31 31 H 1.08004 * 119.95545 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1991 0.0000 4 6 3.5773 1.2034 -0.0058 5 6 4.2745 0.0001 -0.0004 6 7 5.6675 0.0001 0.0001 7 6 6.3518 1.1852 -0.0053 8 1 5.8559 2.0964 0.2948 9 6 7.6831 1.2161 -0.3964 10 7 8.1797 0.2345 -1.1186 11 14 8.7701 2.6512 0.1022 12 1 7.9778 3.6161 0.9062 13 1 9.9097 2.1508 0.9121 14 1 9.2868 3.3270 -1.1149 15 6 6.4000 -1.2686 0.0053 16 6 6.5187 -1.7859 -1.4051 17 8 6.0402 -1.1594 -2.3207 18 8 7.1553 -2.9433 -1.6442 19 6 3.5774 -1.2033 0.0050 20 6 2.1968 -1.1990 0.0044 21 1 -0.3634 0.0043 1.0276 22 1 -0.3633 0.8879 -0.5175 23 1 -0.3633 -0.8921 -0.5101 24 1 1.6546 2.1332 0.0004 25 1 4.1151 2.1399 -0.0101 26 1 9.1099 0.2563 -1.3923 27 1 7.3959 -1.1116 0.4197 28 1 5.8634 -1.9956 0.6150 29 1 7.2056 -3.2346 -2.5650 30 1 4.1151 -2.1399 0.0097 31 1 1.6546 -2.1330 0.0090 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037474226.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:22 Heat of formation + Delta-G solvation = -70.331365 kcal Electronic energy + Delta-G solvation = -16651.798818 eV Core-core repulsion = 13897.743537 eV Total energy + Delta-G solvation = -2754.055282 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.08342 -39.93268 -37.64269 -36.48767 -34.14159 -32.10607 -31.63970 -29.49761 -27.49845 -25.15715 -23.47118 -22.36528 -21.30782 -19.14106 -18.76737 -18.30845 -17.28818 -16.38370 -16.28005 -16.01182 -15.66577 -14.84363 -14.58028 -14.48128 -14.13203 -14.00988 -13.50473 -13.08755 -13.04184 -12.74809 -12.65714 -12.40971 -12.16220 -12.10215 -11.92293 -11.56277 -11.33935 -11.00189 -10.29517 -9.58837 -8.47596 -8.22534 -5.70292 0.81457 0.91852 1.42625 1.44144 1.55694 1.79406 2.23630 2.50482 2.88770 3.11486 3.38654 4.15788 4.29047 4.34228 4.48091 4.69115 4.71095 4.81984 4.88509 5.04556 5.08466 5.11109 5.31548 5.43873 5.47644 5.76106 5.82115 5.95385 6.01727 6.06875 6.47131 6.71731 7.32658 7.50031 7.68293 8.70775 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.009567 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.085059 B = 2926.075115 C = 3847.747271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.197 4.197 3 C -0.071 4.071 4 C -0.227 4.227 5 C 0.191 3.809 6 N -0.462 5.462 7 C -0.320 4.320 8 H 0.097 0.903 9 C -0.021 4.021 10 N -0.907 5.907 11 Si 0.993 3.007 12 H -0.262 1.262 13 H -0.272 1.272 14 H -0.290 1.290 15 C 0.161 3.839 16 C 0.493 3.507 17 O -0.547 6.547 18 O -0.525 6.525 19 C -0.240 4.240 20 C -0.068 4.068 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.130 0.870 25 H 0.104 0.896 26 H 0.267 0.733 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.410 0.590 30 H 0.108 0.892 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 -3.537 3.349 8.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.200 4.200 3 C -0.090 4.090 4 C -0.250 4.250 5 C 0.081 3.919 6 N -0.154 5.154 7 C -0.448 4.448 8 H 0.115 0.885 9 C -0.220 4.220 10 N -0.546 5.546 11 Si 0.818 3.182 12 H -0.186 1.186 13 H -0.198 1.198 14 H -0.216 1.216 15 C 0.034 3.966 16 C 0.335 3.665 17 O -0.435 6.435 18 O -0.337 6.337 19 C -0.263 4.263 20 C -0.087 4.087 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.148 0.852 25 H 0.122 0.878 26 H 0.077 0.923 27 H 0.128 0.872 28 H 0.119 0.881 29 H 0.269 0.731 30 H 0.126 0.874 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.067 -3.266 3.432 7.698 hybrid contribution 1.219 0.493 -0.933 1.612 sum -4.848 -2.774 2.500 6.119 Atomic orbital electron populations 1.20529 0.89514 1.02449 1.01984 1.19800 0.97094 0.92496 1.10615 1.20902 0.92497 0.98262 0.97322 1.20655 0.94855 0.96172 1.13346 1.18352 0.83837 0.94807 0.94920 1.42348 1.00893 1.04102 1.68098 1.19823 0.94155 0.88074 1.42736 0.88548 1.26005 0.99212 1.01423 0.95357 1.69964 1.15343 1.35410 1.33890 0.84855 0.77980 0.77768 0.77624 1.18630 1.19777 1.21618 1.20553 0.99907 0.86440 0.89688 1.24192 0.72092 0.76512 0.93707 1.90563 1.47884 1.57602 1.47488 1.84475 1.72596 1.39602 1.37059 1.20582 0.95361 0.95275 1.15131 1.20859 0.92512 0.98194 0.97130 0.91384 0.91797 0.91532 0.85190 0.87815 0.92308 0.87194 0.88060 0.73128 0.87440 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.15 10.01 71.24 0.71 -1.44 16 2 C -0.20 -6.69 5.88 -19.82 -0.12 -6.80 16 3 C -0.07 -2.66 9.69 22.25 0.22 -2.44 16 4 C -0.23 -10.21 9.28 22.43 0.21 -10.01 16 5 C 0.19 9.10 6.35 38.36 0.24 9.35 16 6 N -0.46 -23.45 2.27 -515.92 -1.17 -24.62 16 7 C -0.32 -17.04 9.11 84.04 0.77 -16.27 16 8 H 0.10 5.06 6.07 -2.91 -0.02 5.04 16 9 C -0.02 -1.07 4.89 84.86 0.41 -0.65 16 10 N -0.91 -48.83 9.18 21.65 0.20 -48.63 16 11 Si 0.99 41.63 29.60 68.60 2.03 43.66 16 12 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 13 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 14 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 15 C 0.16 7.40 4.85 85.63 0.42 7.81 16 16 C 0.49 23.21 6.23 71.23 0.44 23.66 16 17 O -0.55 -30.37 16.71 21.97 0.37 -30.00 16 18 O -0.53 -19.80 13.42 -51.44 -0.69 -20.49 16 19 C -0.24 -10.02 9.11 22.43 0.20 -9.82 16 20 C -0.07 -2.43 9.69 22.25 0.22 -2.21 16 21 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.06 1.42 8.09 -2.39 -0.02 1.40 16 23 H 0.07 1.44 8.08 -2.39 -0.02 1.42 16 24 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 25 H 0.10 4.82 6.11 -2.91 -0.02 4.80 16 26 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 27 H 0.11 5.26 6.48 -2.39 -0.02 5.25 16 28 H 0.10 3.96 6.55 -2.39 -0.02 3.95 16 29 H 0.41 11.87 9.10 -74.05 -0.67 11.20 16 30 H 0.11 4.25 6.17 -2.91 -0.02 4.23 16 31 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -66.03 266.81 4.94 -61.09 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.49 Total: 27.82 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 3.72 Total: -8.83 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -0.97 Total: -73.25 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.32 Total: -50.49 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -66.03 4.94 -61.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037474226.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.245 kcal (2) G-P(sol) polarization free energy of solvation -66.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds