Wall clock time and date at job start Mon Mar 30 2020 03:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00121 * 2 1 4 4 H 1.48505 * 109.46927 * 269.99722 * 3 2 1 5 5 H 1.48499 * 109.47279 * 30.00044 * 3 2 1 6 6 H 1.48508 * 109.47140 * 150.00224 * 3 2 1 7 7 C 1.37877 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99974 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99827 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46738 * 179.97438 * 9 7 2 11 11 O 1.45203 * 109.46835 * 179.97438 * 10 9 7 12 12 C 1.34715 * 116.99726 * 180.02562 * 11 10 9 13 13 O 1.21463 * 120.00038 * 359.97438 * 12 11 10 14 14 C 1.47740 * 119.99790 * 180.02562 * 12 11 10 15 15 C 1.39671 * 120.11489 * 359.97438 * 14 12 11 16 16 C 1.37971 * 119.99829 * 179.97438 * 15 14 12 17 17 C 1.38252 * 120.23249 * 0.27998 * 16 15 14 18 18 C 1.38983 * 120.23452 * 359.44938 * 17 16 15 19 19 N 1.39711 * 120.00756 * 180.27662 * 18 17 16 20 20 C 1.38675 * 119.99357 * 0.54774 * 18 17 16 21 21 H 0.96999 * 119.99729 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47149 * 60.00245 * 9 7 2 23 23 H 1.09003 * 109.47014 * 299.99725 * 9 7 2 24 24 H 1.09001 * 109.47126 * 59.99952 * 10 9 7 25 25 H 1.08994 * 109.47489 * 300.00047 * 10 9 7 26 26 H 1.07996 * 119.99950 * 0.02562 * 15 14 12 27 27 H 1.08002 * 119.87887 * 179.97438 * 16 15 14 28 28 H 1.08005 * 119.88449 * 179.71740 * 17 16 15 29 29 H 0.97000 * 120.00245 * 180.26954 * 19 18 17 30 30 H 0.96996 * 119.99609 * 0.27485 * 19 18 17 31 31 H 1.07998 * 120.11865 * 179.75558 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0023 11 8 5.4735 -2.6366 0.0022 12 6 6.0850 -3.8370 0.0027 13 8 5.4234 -4.8556 0.0035 14 6 7.5603 -3.9144 0.0032 15 6 8.3234 -2.7445 0.0027 16 6 9.7011 -2.8196 0.0038 17 6 10.3312 -4.0501 -0.0005 18 6 9.5814 -5.2203 0.0056 19 7 10.2231 -6.4614 0.0070 20 6 8.1962 -5.1561 0.0046 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6801 0.8911 23 1 3.8752 -0.6805 -0.8889 24 1 3.6584 -3.1510 -0.8875 25 1 3.6578 -3.1499 0.8924 26 1 7.8351 -1.7813 0.0024 27 1 10.2893 -1.9138 0.0030 28 1 11.4100 -4.1023 -0.0043 29 1 9.6998 -7.2780 0.0073 30 1 11.1921 -6.5063 0.0078 31 1 7.6115 -6.0642 0.0053 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041042308.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:52 Heat of formation + Delta-G solvation = -70.154471 kcal Electronic energy + Delta-G solvation = -15410.619208 eV Core-core repulsion = 12656.571598 eV Total energy + Delta-G solvation = -2754.047611 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24500 -38.91990 -36.11886 -34.71355 -33.27584 -31.37834 -30.62456 -28.82783 -25.62729 -23.90063 -22.30762 -20.86680 -20.49225 -18.00988 -17.14773 -16.91273 -16.30228 -15.96088 -15.91494 -15.23977 -14.23261 -14.04301 -13.79977 -13.71223 -13.10171 -13.09641 -12.45971 -11.87892 -11.52851 -11.45906 -11.19769 -10.84605 -10.67403 -10.56864 -9.96984 -9.90866 -9.67715 -9.33058 -9.13028 -8.60659 -7.78602 -6.11275 -4.12371 0.74058 1.41868 2.79219 3.05217 3.29597 3.36790 3.41404 3.65508 3.83098 4.40312 4.74692 4.78796 5.06578 5.22396 5.25518 5.32768 5.56736 5.72673 5.97928 6.00347 6.03971 6.33270 6.35682 6.47991 6.59337 6.79999 7.19889 7.20769 7.24435 7.47572 7.64310 8.15386 8.41565 8.90573 9.48316 11.01348 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.049558 B = 0.004619 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.853399 B = 6060.688481 C = 6605.094411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.083 3.917 11 O -0.354 6.354 12 C 0.501 3.499 13 O -0.512 6.512 14 C -0.070 4.070 15 C -0.119 4.119 16 C -0.086 4.086 17 C -0.170 4.170 18 C 0.200 3.800 19 N -0.880 5.880 20 C -0.137 4.137 21 H 0.266 0.734 22 H 0.029 0.971 23 H 0.024 0.976 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.138 0.862 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.399 0.601 30 H 0.398 0.602 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.723 -8.069 0.031 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.010 3.990 11 O -0.270 6.270 12 C 0.345 3.655 13 O -0.402 6.402 14 C -0.072 4.072 15 C -0.139 4.139 16 C -0.104 4.104 17 C -0.193 4.193 18 C 0.096 3.904 19 N -0.420 5.420 20 C -0.159 4.159 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.156 0.844 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.228 0.772 30 H 0.226 0.774 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 22.283 -8.182 0.034 23.737 hybrid contribution 0.335 0.410 -0.021 0.530 sum 22.618 -7.771 0.014 23.916 Atomic orbital electron populations 1.69898 1.06295 1.27194 1.50181 1.24938 0.94769 0.99194 0.94133 0.86746 0.80445 0.83246 0.78744 1.20045 1.21192 1.18711 1.20849 0.88291 0.95054 1.52315 0.90640 1.19630 0.96985 0.90137 0.97930 1.23414 0.72060 1.01646 1.01879 1.86535 1.26331 1.31333 1.82848 1.21146 0.88873 0.82272 0.73190 1.90794 1.67018 1.36448 1.45944 1.18980 0.89674 0.94193 1.04366 1.21344 0.93717 0.98246 1.00570 1.20893 0.94217 0.97220 0.98111 1.20800 0.99471 0.91378 1.07635 1.17561 0.91162 0.86487 0.95143 1.42407 1.09111 1.04670 1.85776 1.20643 0.92346 0.97597 1.05363 0.92446 0.95320 0.95738 0.91625 0.91591 0.84369 0.85250 0.85877 0.77246 0.77387 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.53 -15.13 9.66 -34.44 -0.33 -15.46 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 10 C 0.08 1.81 5.41 37.16 0.20 2.01 16 11 O -0.35 -7.00 9.47 -40.53 -0.38 -7.38 16 12 C 0.50 9.21 7.90 34.61 0.27 9.48 16 13 O -0.51 -10.52 16.13 -19.24 -0.31 -10.83 16 14 C -0.07 -1.04 5.87 -105.01 -0.62 -1.66 16 15 C -0.12 -1.51 9.61 -39.14 -0.38 -1.89 16 16 C -0.09 -0.86 10.02 -39.67 -0.40 -1.26 16 17 C -0.17 -1.57 9.89 -39.30 -0.39 -1.96 16 18 C 0.20 2.02 6.75 -83.83 -0.57 1.46 16 19 N -0.88 -5.96 9.09 32.39 0.29 -5.66 16 20 C -0.14 -1.74 9.44 -38.95 -0.37 -2.11 16 21 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 23 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 24 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 26 H 0.14 1.75 7.60 -52.49 -0.40 1.35 16 27 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 29 H 0.40 2.26 8.84 -40.82 -0.36 1.90 16 30 H 0.40 1.79 8.84 -40.82 -0.36 1.43 16 31 H 0.13 1.70 7.65 -52.49 -0.40 1.29 16 LS Contribution 277.70 15.07 4.18 4.18 Total: -1.00 -32.73 277.70 -6.47 -39.20 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -3.57 Total: 0.16 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.79 Total: -9.74 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 1.07 Total: -32.44 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.69 Total: -18.21 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.73 -6.47 -39.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041042308.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.954 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds