Wall clock time and date at job start Mon Mar 30 2020 03:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00121 * 2 1 4 4 H 1.48505 * 109.46927 * 269.99722 * 3 2 1 5 5 H 1.48499 * 109.47279 * 30.00044 * 3 2 1 6 6 H 1.48508 * 109.47140 * 150.00224 * 3 2 1 7 7 C 1.37877 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99974 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99827 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46738 * 179.97438 * 9 7 2 11 11 O 1.45203 * 109.46835 * 179.97438 * 10 9 7 12 12 C 1.34715 * 116.99726 * 180.02562 * 11 10 9 13 13 O 1.21463 * 120.00038 * 359.97438 * 12 11 10 14 14 C 1.47740 * 119.99790 * 180.02562 * 12 11 10 15 15 C 1.39671 * 120.11489 * 359.97438 * 14 12 11 16 16 C 1.37971 * 119.99829 * 179.97438 * 15 14 12 17 17 C 1.38252 * 120.23249 * 0.27998 * 16 15 14 18 18 C 1.38983 * 120.23452 * 359.44938 * 17 16 15 19 19 N 1.39711 * 120.00756 * 180.27662 * 18 17 16 20 20 C 1.38675 * 119.99357 * 0.54774 * 18 17 16 21 21 H 0.96999 * 119.99729 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47149 * 60.00245 * 9 7 2 23 23 H 1.09003 * 109.47014 * 299.99725 * 9 7 2 24 24 H 1.09001 * 109.47126 * 59.99952 * 10 9 7 25 25 H 1.08994 * 109.47489 * 300.00047 * 10 9 7 26 26 H 1.07996 * 119.99950 * 0.02562 * 15 14 12 27 27 H 1.08002 * 119.87887 * 179.97438 * 16 15 14 28 28 H 1.08005 * 119.88449 * 179.71740 * 17 16 15 29 29 H 0.97000 * 120.00245 * 180.26954 * 19 18 17 30 30 H 0.96996 * 119.99609 * 0.27485 * 19 18 17 31 31 H 1.07998 * 120.11865 * 179.75558 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0023 11 8 5.4735 -2.6366 0.0022 12 6 6.0850 -3.8370 0.0027 13 8 5.4234 -4.8556 0.0035 14 6 7.5603 -3.9144 0.0032 15 6 8.3234 -2.7445 0.0027 16 6 9.7011 -2.8196 0.0038 17 6 10.3312 -4.0501 -0.0005 18 6 9.5814 -5.2203 0.0056 19 7 10.2231 -6.4614 0.0070 20 6 8.1962 -5.1561 0.0046 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6801 0.8911 23 1 3.8752 -0.6805 -0.8889 24 1 3.6584 -3.1510 -0.8875 25 1 3.6578 -3.1499 0.8924 26 1 7.8351 -1.7813 0.0024 27 1 10.2893 -1.9138 0.0030 28 1 11.4100 -4.1023 -0.0043 29 1 9.6998 -7.2780 0.0073 30 1 11.1921 -6.5063 0.0078 31 1 7.6115 -6.0642 0.0053 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041042308.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:52 Heat of formation + Delta-G solvation = -92.063099 kcal Electronic energy + Delta-G solvation = -15411.569238 eV Core-core repulsion = 12656.571598 eV Total energy + Delta-G solvation = -2754.997640 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.59631 -39.94562 -37.71093 -35.55355 -35.31131 -32.88863 -32.08086 -29.66092 -27.42786 -25.24144 -23.15008 -22.68518 -21.89898 -19.37649 -18.80045 -18.06763 -17.57378 -17.46825 -16.87294 -16.43707 -16.16349 -15.28090 -14.93763 -14.87926 -14.58405 -14.31226 -14.12886 -13.32941 -13.18937 -12.74793 -12.52281 -12.48383 -12.24140 -11.80933 -11.64638 -11.58552 -11.50040 -11.45937 -10.81245 -10.02883 -8.51732 -8.34507 -6.43094 -0.28996 0.57700 1.38975 1.40876 1.53770 1.54256 1.63217 2.35111 2.89070 2.99799 3.00312 3.59969 3.95289 4.14765 4.16200 4.19449 4.33878 4.51033 4.58643 4.70867 4.91636 5.00960 5.21984 5.27798 5.41509 5.44346 5.51561 5.54457 5.81652 6.15276 6.52742 6.62689 6.65980 7.00327 7.22009 8.81703 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.049558 B = 0.004619 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.853399 B = 6060.688481 C = 6605.094411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.243 1.243 7 C -0.544 4.544 8 H 0.034 0.966 9 C -0.002 4.002 10 C 0.092 3.908 11 O -0.352 6.352 12 C 0.498 3.502 13 O -0.544 6.544 14 C -0.097 4.097 15 C -0.130 4.130 16 C -0.078 4.078 17 C -0.157 4.157 18 C 0.205 3.795 19 N -0.866 5.866 20 C -0.154 4.154 21 H 0.271 0.729 22 H 0.037 0.963 23 H 0.036 0.964 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.134 0.866 27 H 0.162 0.838 28 H 0.161 0.839 29 H 0.405 0.595 30 H 0.413 0.587 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.728 -6.998 0.016 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.166 1.166 7 C -0.582 4.582 8 H 0.052 0.948 9 C -0.039 4.039 10 C 0.019 3.981 11 O -0.268 6.268 12 C 0.345 3.655 13 O -0.436 6.436 14 C -0.099 4.099 15 C -0.150 4.150 16 C -0.096 4.096 17 C -0.180 4.180 18 C 0.099 3.901 19 N -0.407 5.407 20 C -0.177 4.177 21 H 0.080 0.920 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.152 0.848 27 H 0.180 0.820 28 H 0.178 0.822 29 H 0.234 0.766 30 H 0.244 0.756 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 26.332 -7.154 0.019 27.287 hybrid contribution -0.827 -0.073 -0.017 0.830 sum 25.505 -7.227 0.002 26.509 Atomic orbital electron populations 1.70044 1.08371 1.28679 1.51334 1.25972 0.95693 1.03659 0.93325 0.85581 0.79552 0.77492 0.79614 1.18682 1.20525 1.16632 1.21113 0.90689 0.93841 1.52566 0.94751 1.19462 0.94162 0.91678 0.98633 1.23006 0.73813 1.00123 1.01150 1.86516 1.24577 1.32459 1.83285 1.21949 0.90486 0.81183 0.71881 1.90767 1.68021 1.37126 1.47726 1.18878 0.87068 0.96017 1.07890 1.21425 0.95093 0.97199 1.01321 1.21251 0.93027 0.98991 0.96381 1.21255 1.01266 0.90439 1.05001 1.17645 0.90179 0.88181 0.94123 1.42406 1.10012 1.03846 1.84406 1.20637 0.93764 0.96529 1.06803 0.92007 0.94460 0.94548 0.92449 0.92452 0.84789 0.81997 0.82171 0.76577 0.75638 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.37 13.96 21.45 0.30 -59.07 16 2 C 0.01 0.67 5.47 84.65 0.46 1.14 16 3 Si 0.96 43.75 27.47 68.60 1.88 45.63 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 7 C -0.54 -32.14 9.66 25.60 0.25 -31.89 16 8 H 0.03 2.23 7.99 -2.91 -0.02 2.21 16 9 C 0.00 -0.09 4.42 29.85 0.13 0.04 16 10 C 0.09 4.18 5.41 71.98 0.39 4.57 16 11 O -0.35 -14.09 9.47 -56.25 -0.53 -14.63 16 12 C 0.50 18.83 7.90 70.33 0.56 19.39 16 13 O -0.54 -23.39 16.13 19.96 0.32 -23.07 16 14 C -0.10 -2.84 5.87 -20.11 -0.12 -2.96 16 15 C -0.13 -3.10 9.61 22.55 0.22 -2.88 16 16 C -0.08 -1.27 10.02 22.21 0.22 -1.05 16 17 C -0.16 -2.22 9.89 22.45 0.22 -1.99 16 18 C 0.20 3.57 6.75 38.17 0.26 3.83 16 19 N -0.87 -9.04 9.09 -51.45 -0.47 -9.50 16 20 C -0.15 -3.84 9.44 22.68 0.21 -3.62 16 21 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 22 H 0.04 1.76 7.20 -2.39 -0.02 1.74 16 23 H 0.04 1.69 7.57 -2.39 -0.02 1.67 16 24 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.13 3.22 7.60 -2.91 -0.02 3.20 16 27 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 28 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 29 H 0.41 3.65 8.84 -92.71 -0.82 2.83 16 30 H 0.41 2.05 8.84 -92.71 -0.82 1.23 16 31 H 0.12 3.22 7.65 -2.91 -0.02 3.20 16 Total: -1.00 -73.04 277.70 3.77 -69.26 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -0.53 Total: 6.82 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 2.80 Total: -15.44 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -0.17 Total: -68.57 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.21 Total: -37.70 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.63 kcal Total: -73.04 3.77 -69.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041042308.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.801 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds