Wall clock time and date at job start Mon Mar 30 2020 03:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31449 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48502 * 109.46932 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47340 * 299.99866 * 3 2 1 6 6 H 1.48502 * 109.46947 * 59.99935 * 3 2 1 7 7 C 1.38758 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99494 * 179.97438 * 7 2 1 9 9 O 1.34915 * 120.00435 * 0.02562 * 7 2 1 10 10 C 1.34310 * 117.00503 * 179.97438 * 9 7 2 11 11 O 1.21216 * 119.99647 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00486 * 179.97438 * 10 9 7 13 13 C 1.52995 * 109.47477 * 180.02562 * 12 10 9 14 14 C 1.50689 * 109.47479 * 180.02562 * 13 12 10 15 15 C 1.38293 * 119.92619 * 90.00264 * 14 13 12 16 16 C 1.38103 * 120.07544 * 180.02562 * 15 14 13 17 17 C 1.38914 * 119.92585 * 0.02562 * 16 15 14 18 18 N 1.39671 * 120.07130 * 179.97438 * 17 16 15 19 19 C 1.38912 * 119.84788 * 0.25342 * 17 16 15 20 20 C 1.38098 * 119.92495 * 359.48977 * 19 17 16 21 21 H 0.97001 * 119.99313 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46699 * 60.00788 * 12 10 9 23 23 H 1.09002 * 109.47117 * 300.00663 * 12 10 9 24 24 H 1.09007 * 109.46938 * 59.99905 * 13 12 10 25 25 H 1.09003 * 109.47088 * 300.01087 * 13 12 10 26 26 H 1.08001 * 119.95818 * 0.04180 * 15 14 13 27 27 H 1.07999 * 120.03416 * 179.97438 * 16 15 14 28 28 H 0.97001 * 120.00529 * 0.02562 * 18 17 16 29 29 H 0.97005 * 119.99745 * 179.72366 * 18 17 16 30 30 H 1.08005 * 120.03088 * 179.72680 * 19 17 16 31 31 H 1.08005 * 119.96252 * 180.25688 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7085 1.3462 0.0006 5 1 1.8899 2.3964 -1.2124 6 1 1.8898 2.3964 1.2125 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0005 11 8 3.2755 -3.4332 0.0010 12 6 1.3808 -4.8393 0.0011 13 6 2.4344 -5.9487 0.0016 14 6 1.7503 -7.2913 0.0016 15 6 1.4375 -7.9062 -1.1970 16 6 0.8101 -9.1365 -1.2006 17 6 0.4926 -9.7561 0.0015 18 7 -0.1425 -11.0000 0.0013 19 6 0.8030 -9.1329 1.2036 20 6 1.4352 -7.9052 1.2000 21 1 -0.4849 0.8401 -0.0004 22 1 0.7578 -4.9300 -0.8887 23 1 0.7583 -4.9295 0.8913 24 1 3.0572 -5.8578 0.8917 25 1 3.0574 -5.8585 -0.8883 26 1 1.6845 -7.4239 -2.1312 27 1 0.5658 -9.6159 -2.1370 28 1 -0.3620 -11.4325 -0.8387 29 1 -0.3601 -11.4336 0.8414 30 1 0.5535 -9.6100 2.1399 31 1 1.6805 -7.4221 2.1343 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041048148.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:53 Heat of formation + Delta-G solvation = -70.267542 kcal Electronic energy + Delta-G solvation = -15365.422589 eV Core-core repulsion = 12611.370075 eV Total energy + Delta-G solvation = -2754.052514 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.48014 -38.78998 -35.66052 -34.81957 -32.21686 -32.00940 -30.81188 -28.22032 -25.45300 -23.68569 -22.76454 -20.91938 -19.53848 -17.64632 -17.13085 -16.92666 -16.50619 -15.10978 -15.09259 -14.38311 -14.30191 -14.13549 -13.48879 -13.34089 -13.26990 -12.69312 -12.44915 -11.72414 -11.59994 -11.19566 -11.00331 -10.96834 -10.50399 -10.37772 -10.31673 -10.27252 -9.71451 -8.92327 -8.85331 -8.51486 -7.44994 -6.34308 -4.01939 1.51328 1.65821 3.14889 3.23115 3.30933 3.64068 3.76829 3.89859 4.05779 4.68204 4.92761 5.04767 5.18392 5.31475 5.46944 5.56576 5.63398 5.73041 5.84179 6.09919 6.11241 6.27448 6.41525 6.52244 6.57797 6.91735 6.93114 6.94531 7.42958 7.47189 7.62690 8.03327 8.81036 9.14878 9.95658 10.84102 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.064806 B = 0.004093 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.957397 B = 6839.518524 C = 6955.584063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.381 4.381 8 H 0.095 0.905 9 O -0.218 6.218 10 C 0.397 3.603 11 O -0.559 6.559 12 C -0.097 4.097 13 C -0.059 4.059 14 C -0.130 4.130 15 C -0.067 4.067 16 C -0.197 4.197 17 C 0.204 3.796 18 N -0.884 5.884 19 C -0.197 4.197 20 C -0.067 4.067 21 H 0.268 0.732 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.395 0.605 29 H 0.395 0.605 30 H 0.116 0.884 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.076 -18.288 0.001 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.457 4.457 8 H 0.113 0.887 9 O -0.125 6.125 10 C 0.244 3.756 11 O -0.457 6.457 12 C -0.135 4.135 13 C -0.096 4.096 14 C -0.132 4.132 15 C -0.086 4.086 16 C -0.220 4.220 17 C 0.100 3.900 18 N -0.423 5.423 19 C -0.219 4.219 20 C -0.086 4.086 21 H 0.078 0.922 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.223 0.777 29 H 0.223 0.777 30 H 0.134 0.866 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.930 -18.048 0.002 18.072 hybrid contribution 0.106 0.421 -0.001 0.434 sum -0.824 -17.626 0.000 17.646 Atomic orbital electron populations 1.70013 1.05978 1.27409 1.47075 1.25332 0.95798 0.98834 0.96383 0.85633 0.79469 0.80213 0.78050 1.18985 1.20233 1.20236 1.21269 0.92367 0.80034 1.52079 0.88725 1.83889 1.39470 1.13455 1.75725 1.23320 0.86735 0.87397 0.78149 1.90544 1.15853 1.88236 1.51045 1.21088 0.98595 0.89315 1.04482 1.20250 0.96383 0.88945 1.04043 1.19750 1.03095 0.97366 0.92955 1.20853 0.96050 0.93897 0.97788 1.20538 1.07546 0.97907 0.95961 1.17773 0.92180 0.86037 0.93976 1.42427 1.69034 1.20354 1.10499 1.20537 1.07520 0.97930 0.95962 1.20850 0.96013 0.93933 0.97791 0.92245 0.89224 0.89225 0.90606 0.90615 0.85991 0.86556 0.77716 0.77718 0.86555 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.02 13.67 55.48 0.76 -25.26 16 2 C 0.04 1.15 5.49 -17.52 -0.10 1.06 16 3 Si 0.94 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.38 -11.59 9.65 30.92 0.30 -11.29 16 8 H 0.10 2.90 6.86 -52.48 -0.36 2.54 16 9 O -0.22 -6.44 9.75 -20.68 -0.20 -6.64 16 10 C 0.40 10.03 7.91 36.00 0.28 10.31 16 11 O -0.56 -15.26 15.22 -19.06 -0.29 -15.55 16 12 C -0.10 -1.81 5.79 -27.89 -0.16 -1.97 16 13 C -0.06 -0.95 4.63 -27.89 -0.13 -1.08 16 14 C -0.13 -1.82 5.14 -104.59 -0.54 -2.36 16 15 C -0.07 -0.87 9.69 -39.61 -0.38 -1.25 16 16 C -0.20 -2.27 9.90 -39.38 -0.39 -2.66 16 17 C 0.20 2.24 6.75 -83.79 -0.57 1.68 16 18 N -0.88 -6.74 9.09 32.41 0.29 -6.44 16 19 C -0.20 -2.27 9.90 -39.38 -0.39 -2.66 16 20 C -0.07 -0.87 9.69 -39.62 -0.38 -1.25 16 21 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 22 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 23 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 24 H 0.08 1.26 8.04 -51.92 -0.42 0.84 16 25 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 26 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 27 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.40 2.32 8.84 -40.82 -0.36 1.96 16 29 H 0.40 2.32 8.84 -40.82 -0.36 1.96 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 280.57 15.07 4.23 4.23 Total: -1.00 -34.54 280.57 -6.28 -40.81 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -3.59 Total: 3.59 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.45 Total: -11.47 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 1.05 Total: -31.70 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.49 Total: -22.19 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.54 -6.28 -40.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041048148.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.453 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds