Wall clock time and date at job start Mon Mar 30 2020 03:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00124 * 2 1 4 4 H 1.48501 * 109.46980 * 240.00308 * 3 2 1 5 5 H 1.48510 * 109.47100 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47251 * 120.00153 * 3 2 1 7 7 C 1.37874 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00474 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47407 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47143 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00139 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99639 * 359.97438 * 12 11 10 14 14 C 1.47594 * 120.00022 * 179.97438 * 12 11 10 15 15 C 1.39745 * 120.08542 * 179.97438 * 14 12 11 16 16 C 1.37697 * 119.90926 * 180.02562 * 15 14 12 17 17 C 1.38998 * 120.08973 * 0.02562 * 16 15 14 18 18 O 1.35709 * 119.91176 * 179.97438 * 17 16 15 19 19 C 1.39004 * 120.17592 * 0.25235 * 17 16 15 20 20 C 1.37699 * 120.08418 * 359.44700 * 19 17 16 21 21 H 0.96998 * 120.00393 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.46946 * 59.99596 * 9 7 2 23 23 H 1.09000 * 109.46938 * 299.99812 * 9 7 2 24 24 H 1.09001 * 109.47112 * 59.99625 * 10 9 7 25 25 H 1.09000 * 109.47240 * 300.00021 * 10 9 7 26 26 H 0.96999 * 119.99884 * 359.97438 * 11 10 9 27 27 H 1.07998 * 120.04295 * 0.02562 * 15 14 12 28 28 H 1.08000 * 119.95723 * 179.97438 * 16 15 14 29 29 H 0.96700 * 114.00111 * 90.00183 * 18 17 16 30 30 H 1.08002 * 119.95330 * 179.72998 * 19 17 16 31 31 H 1.08007 * 120.04247 * 180.27662 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1865 -6.0981 0.0018 13 8 3.4024 -6.0980 0.0014 14 6 1.4485 -7.3762 0.0030 15 6 2.1454 -8.5875 0.0031 16 6 1.4532 -9.7779 0.0037 17 6 0.0632 -9.7757 0.0036 18 8 -0.6153 -10.9510 0.0037 19 6 -0.6336 -8.5730 -0.0023 20 6 0.0512 -7.3784 0.0033 21 1 -0.4850 0.8400 0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8719 -3.6044 -0.8894 26 1 0.5427 -4.9308 0.0019 27 1 3.2254 -8.5900 0.0027 28 1 1.9910 -10.7145 0.0033 29 1 -0.8120 -11.2916 0.8871 30 1 -1.7136 -8.5756 -0.0068 31 1 -0.4909 -6.4443 0.0032 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138060.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:07 Heat of formation + Delta-G solvation = -91.033702 kcal Electronic energy + Delta-G solvation = -15317.880178 eV Core-core repulsion = 12562.927176 eV Total energy + Delta-G solvation = -2754.953002 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31660 -39.99190 -37.46678 -36.65533 -34.87855 -32.36737 -31.81447 -30.54521 -26.88675 -24.56143 -23.77437 -22.80070 -21.60698 -19.47904 -18.92717 -18.45063 -17.20814 -16.57241 -16.50805 -16.33423 -16.03549 -15.76928 -14.94749 -14.80848 -14.44148 -14.29490 -13.63837 -13.23759 -13.13974 -13.00690 -12.90532 -12.54574 -12.24799 -11.70366 -11.50611 -11.44462 -11.00224 -10.60512 -10.16008 -10.10348 -9.67034 -8.24301 -6.34900 -0.29622 0.30415 1.42261 1.44480 1.52445 1.74562 2.18483 2.44327 2.73482 3.10527 3.19610 3.72652 3.82532 3.93690 4.27727 4.40858 4.46934 4.47606 4.71372 4.82865 4.96819 5.14272 5.23770 5.28901 5.33648 5.46761 5.56474 5.70193 5.77524 6.15096 6.54834 6.77735 6.82730 7.16826 7.34410 8.87376 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.057825 B = 0.004107 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.100113 B = 6816.166650 C = 7277.259005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.711 5.711 12 C 0.548 3.452 13 O -0.588 6.588 14 C -0.162 4.162 15 C -0.053 4.053 16 C -0.154 4.154 17 C 0.138 3.862 18 O -0.504 6.504 19 C -0.153 4.153 20 C -0.067 4.067 21 H 0.266 0.734 22 H 0.010 0.990 23 H 0.011 0.989 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.410 0.590 27 H 0.133 0.867 28 H 0.156 0.844 29 H 0.418 0.582 30 H 0.159 0.841 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.351 -19.556 1.806 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.588 4.588 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.362 5.362 12 C 0.337 3.663 13 O -0.470 6.470 14 C -0.165 4.165 15 C -0.072 4.072 16 C -0.172 4.172 17 C 0.093 3.907 18 O -0.318 6.318 19 C -0.171 4.171 20 C -0.085 4.085 21 H 0.075 0.925 22 H 0.028 0.972 23 H 0.029 0.971 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.247 0.753 27 H 0.151 0.849 28 H 0.174 0.826 29 H 0.279 0.721 30 H 0.176 0.824 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.633 -19.357 1.215 19.573 hybrid contribution -0.059 1.063 0.460 1.160 sum -2.692 -18.294 1.674 18.566 Atomic orbital electron populations 1.70044 1.07515 1.28106 1.50850 1.25858 0.95802 1.03055 0.94336 0.85500 0.78314 0.78126 0.79123 1.19391 1.20540 1.19326 1.21439 0.93626 0.91919 1.51796 0.92274 1.19140 0.94213 0.91645 0.96492 1.21291 0.95153 0.81927 1.00062 1.46076 1.11132 1.05552 1.73445 1.18757 0.87029 0.84740 0.75746 1.90718 1.15277 1.88360 1.52693 1.19939 0.94634 0.92582 1.09359 1.21214 1.00870 0.90688 0.94440 1.21577 0.93843 0.98834 1.02971 1.18796 0.89917 0.85856 0.96166 1.84702 1.75966 1.35272 1.35902 1.21609 1.02032 0.90899 1.02531 1.21417 0.92008 0.99740 0.95366 0.92496 0.97202 0.97110 0.93260 0.93346 0.75324 0.84926 0.82592 0.72141 0.82362 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -30.75 9.11 25.60 0.23 -30.51 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.14 5.09 29.85 0.15 1.29 16 10 C 0.14 6.09 5.61 86.38 0.48 6.57 16 11 N -0.71 -25.60 5.51 -466.21 -2.57 -28.16 16 12 C 0.55 19.70 7.76 86.71 0.67 20.38 16 13 O -0.59 -25.47 16.34 -4.00 -0.07 -25.54 16 14 C -0.16 -4.46 5.87 -20.08 -0.12 -4.58 16 15 C -0.05 -1.29 9.58 22.51 0.22 -1.07 16 16 C -0.15 -2.83 9.97 22.32 0.22 -2.61 16 17 C 0.14 2.35 6.71 22.64 0.15 2.50 16 18 O -0.50 -6.56 13.49 -90.29 -1.22 -7.78 16 19 C -0.15 -2.65 9.97 22.33 0.22 -2.43 16 20 C -0.07 -1.43 9.53 22.50 0.21 -1.22 16 21 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 22 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 23 H 0.01 0.55 8.14 -2.39 -0.02 0.54 16 24 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.41 12.45 6.49 -92.71 -0.60 11.85 16 27 H 0.13 3.35 7.64 -2.91 -0.02 3.33 16 28 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 29 H 0.42 1.13 9.06 -74.06 -0.67 0.46 16 30 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.15 2.71 6.40 -2.91 -0.02 2.69 16 Total: -1.00 -70.48 278.48 1.26 -69.22 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -0.11 Total: 11.23 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 2.91 Total: -10.75 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -2.28 Total: -81.92 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -1.28 Total: -33.32 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -70.48 1.26 -69.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138060.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.815 kcal (2) G-P(sol) polarization free energy of solvation -70.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds