Wall clock time and date at job start Mon Mar 30 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99970 * 2 1 4 4 H 1.48507 * 109.46951 * 240.00112 * 3 2 1 5 5 H 1.48499 * 109.47344 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47198 * 120.00111 * 3 2 1 7 7 C 1.37877 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00020 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47296 * 179.97438 * 9 7 2 11 11 C 1.34767 * 120.00324 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00029 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00235 * 179.97438 * 11 10 9 14 14 C 1.50707 * 109.47216 * 180.02562 * 13 11 10 15 15 C 1.38289 * 119.96864 * 269.97843 * 14 13 11 16 16 C 1.38240 * 120.10976 * 180.02562 * 15 14 13 17 17 C 1.38174 * 120.05836 * 359.67645 * 16 15 14 18 18 C 1.38709 * 119.93612 * 0.62068 * 17 16 15 19 19 O 1.35905 * 120.05346 * 179.68169 * 18 17 16 20 20 C 1.38116 * 119.97322 * 90.00175 * 14 13 11 21 21 H 0.97000 * 119.99639 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47191 * 59.99555 * 9 7 2 23 23 H 1.09002 * 109.47466 * 299.99720 * 9 7 2 24 24 H 0.96996 * 119.99480 * 359.97438 * 10 9 7 25 25 H 1.09002 * 109.47278 * 59.99844 * 13 11 10 26 26 H 1.09000 * 109.47104 * 299.99639 * 13 11 10 27 27 H 1.08002 * 119.94362 * 359.97438 * 15 14 13 28 28 H 1.08006 * 119.97243 * 179.97438 * 16 15 14 29 29 H 1.07996 * 120.03053 * 180.29714 * 17 16 15 30 30 H 0.96705 * 113.99576 * 269.72355 * 19 18 17 31 31 H 1.08003 * 120.03068 * 0.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1049 0.0020 13 6 2.7330 -6.0287 0.0005 14 6 1.9795 -7.3339 0.0006 15 6 1.6350 -7.9325 1.1986 16 6 0.9442 -9.1300 1.2022 17 6 0.5904 -9.7284 0.0080 18 6 0.9403 -9.1330 -1.1949 19 8 0.5991 -9.7228 -2.3709 20 6 1.6340 -7.9313 -1.1958 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 3.1566 -3.4354 0.0002 25 1 3.3604 -5.9709 0.8900 26 1 3.3590 -5.9712 -0.8900 27 1 1.9068 -7.4641 2.1331 28 1 0.6766 -9.5958 2.1392 29 1 0.0466 -10.6614 0.0113 30 1 1.2655 -10.3352 -2.7115 31 1 1.9040 -7.4638 -2.1312 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054156782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:23 Heat of formation + Delta-G solvation = -67.279795 kcal Electronic energy + Delta-G solvation = -15487.626234 eV Core-core repulsion = 12733.703278 eV Total energy + Delta-G solvation = -2753.922955 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89330 -38.60307 -36.69522 -34.17114 -32.59041 -32.20664 -29.85778 -28.24119 -26.46519 -22.84968 -22.54543 -21.46750 -19.67687 -18.05509 -17.08591 -16.34839 -15.85746 -15.62856 -15.34439 -14.92577 -14.41147 -14.16671 -13.75330 -13.03049 -12.87373 -12.47850 -12.09712 -11.90162 -11.86075 -11.55325 -11.26025 -10.99674 -10.85597 -10.48178 -10.30811 -9.41090 -9.18011 -8.74110 -8.72575 -8.49815 -7.87658 -6.16156 -4.23499 1.29465 1.38412 3.25235 3.30038 3.31573 3.37866 3.62088 4.09344 4.25489 4.44328 4.77184 4.90323 5.13552 5.19661 5.34532 5.38821 5.56937 5.61436 5.64671 5.93134 6.03979 6.41831 6.43471 6.62877 6.84500 7.31519 7.44142 7.52455 7.62881 7.66599 7.97529 8.62827 8.78247 9.11241 9.43222 10.94023 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.054928 B = 0.004317 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.633261 B = 6483.730632 C = 6566.192710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.714 5.714 11 C 0.498 3.502 12 O -0.547 6.547 13 C -0.108 4.108 14 C -0.038 4.038 15 C -0.114 4.114 16 C -0.104 4.104 17 C -0.151 4.151 18 C 0.101 3.899 19 O -0.499 6.499 20 C -0.130 4.130 21 H 0.266 0.734 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.390 0.610 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.386 0.614 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.663 -17.285 0.053 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.362 5.362 11 C 0.282 3.718 12 O -0.426 6.426 13 C -0.148 4.148 14 C -0.039 4.039 15 C -0.132 4.132 16 C -0.123 4.123 17 C -0.169 4.169 18 C 0.057 3.943 19 O -0.309 6.309 20 C -0.149 4.149 21 H 0.076 0.924 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.223 0.777 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.241 0.759 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.098 -16.939 0.109 18.004 hybrid contribution 1.214 0.814 -0.101 1.465 sum 7.312 -16.125 0.008 17.705 Atomic orbital electron populations 1.69970 1.06131 1.27424 1.48758 1.24958 0.94909 0.99453 0.94685 0.86469 0.79409 0.82312 0.78678 1.20065 1.21059 1.20059 1.21191 0.93221 0.90476 1.53393 0.91934 1.19099 0.88329 0.81949 0.97732 1.46462 1.11097 1.06079 1.72598 1.20300 0.89407 0.84149 0.77922 1.90699 1.16785 1.84809 1.50276 1.20769 0.97976 0.91163 1.04887 1.19239 0.97403 0.94364 0.92872 1.21038 0.99017 0.95486 0.97655 1.20954 0.98076 0.95658 0.97567 1.21336 1.02351 1.01193 0.92062 1.18396 0.97568 0.93223 0.85109 1.84865 1.47062 1.62381 1.36557 1.21254 0.99299 0.95935 0.98410 0.92376 0.95583 0.95565 0.77707 0.88207 0.88347 0.85841 0.85711 0.85769 0.75942 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 10 N -0.71 -14.97 5.55 -61.47 -0.34 -15.31 16 11 C 0.50 9.95 7.82 -10.99 -0.09 9.87 16 12 O -0.55 -13.56 16.03 5.55 0.09 -13.47 16 13 C -0.11 -1.49 5.83 -29.03 -0.17 -1.66 16 14 C -0.04 -0.55 4.37 -104.64 -0.46 -1.01 16 15 C -0.11 -1.53 9.70 -39.56 -0.38 -1.92 16 16 C -0.10 -1.26 10.04 -39.60 -0.40 -1.66 16 17 C -0.15 -1.85 9.99 -39.43 -0.39 -2.25 16 18 C 0.10 1.36 6.70 -39.22 -0.26 1.10 16 19 O -0.50 -5.92 13.50 -19.44 -0.26 -6.18 16 20 C -0.13 -1.87 9.64 -39.43 -0.38 -2.25 16 21 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 25 H 0.10 1.11 8.09 -51.93 -0.42 0.69 16 26 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 27 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.39 2.38 9.06 45.56 0.41 2.79 16 31 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 281.46 15.07 4.24 4.24 Total: -1.00 -34.83 281.46 -6.37 -41.20 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -2.84 Total: 5.86 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -2.98 Total: -6.59 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.40 Total: -40.89 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.17 Total: -19.65 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.83 -6.37 -41.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054156782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.077 kcal (2) G-P(sol) polarization free energy of solvation -34.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds