Wall clock time and date at job start Mon Mar 30 2020 03:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99970 * 2 1 4 4 H 1.48507 * 109.46951 * 240.00112 * 3 2 1 5 5 H 1.48499 * 109.47344 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47198 * 120.00111 * 3 2 1 7 7 C 1.37877 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00020 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47296 * 179.97438 * 9 7 2 11 11 C 1.34767 * 120.00324 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00029 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00235 * 179.97438 * 11 10 9 14 14 C 1.50707 * 109.47216 * 180.02562 * 13 11 10 15 15 C 1.38289 * 119.96864 * 269.97843 * 14 13 11 16 16 C 1.38240 * 120.10976 * 180.02562 * 15 14 13 17 17 C 1.38174 * 120.05836 * 359.67645 * 16 15 14 18 18 C 1.38709 * 119.93612 * 0.62068 * 17 16 15 19 19 O 1.35905 * 120.05346 * 179.68169 * 18 17 16 20 20 C 1.38116 * 119.97322 * 90.00175 * 14 13 11 21 21 H 0.97000 * 119.99639 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47191 * 59.99555 * 9 7 2 23 23 H 1.09002 * 109.47466 * 299.99720 * 9 7 2 24 24 H 0.96996 * 119.99480 * 359.97438 * 10 9 7 25 25 H 1.09002 * 109.47278 * 59.99844 * 13 11 10 26 26 H 1.09000 * 109.47104 * 299.99639 * 13 11 10 27 27 H 1.08002 * 119.94362 * 359.97438 * 15 14 13 28 28 H 1.08006 * 119.97243 * 179.97438 * 16 15 14 29 29 H 1.07996 * 120.03053 * 180.29714 * 17 16 15 30 30 H 0.96705 * 113.99576 * 269.72355 * 19 18 17 31 31 H 1.08003 * 120.03068 * 0.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1049 0.0020 13 6 2.7330 -6.0287 0.0005 14 6 1.9795 -7.3339 0.0006 15 6 1.6350 -7.9325 1.1986 16 6 0.9442 -9.1300 1.2022 17 6 0.5904 -9.7284 0.0080 18 6 0.9403 -9.1330 -1.1949 19 8 0.5991 -9.7228 -2.3709 20 6 1.6340 -7.9313 -1.1958 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 3.1566 -3.4354 0.0002 25 1 3.3604 -5.9709 0.8900 26 1 3.3590 -5.9712 -0.8900 27 1 1.9068 -7.4641 2.1331 28 1 0.6766 -9.5958 2.1392 29 1 0.0466 -10.6614 0.0113 30 1 1.2655 -10.3352 -2.7115 31 1 1.9040 -7.4638 -2.1312 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054156782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:22 Heat of formation + Delta-G solvation = -94.235027 kcal Electronic energy + Delta-G solvation = -15488.795100 eV Core-core repulsion = 12733.703278 eV Total energy + Delta-G solvation = -2755.091822 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05381 -40.05758 -37.69397 -36.12143 -34.37267 -33.55932 -30.86463 -29.85939 -28.04690 -24.74738 -23.53093 -22.70595 -21.31752 -19.18815 -18.75362 -17.50567 -17.31382 -17.01667 -16.92792 -16.22765 -15.96593 -15.75716 -14.77160 -14.60747 -14.13866 -14.04589 -13.98790 -13.21624 -13.08825 -12.92026 -12.69488 -12.60364 -12.33678 -12.23289 -11.51909 -11.40925 -10.84050 -10.79279 -9.82798 -9.77879 -9.51142 -8.28998 -6.46199 0.30464 0.39042 1.43428 1.47701 1.55959 1.78666 2.32250 2.51822 2.89832 3.05820 3.28500 3.70229 3.96310 4.17519 4.21321 4.37591 4.43976 4.59274 4.68834 4.98855 5.05499 5.13888 5.23349 5.44727 5.46713 5.48936 5.61917 5.70208 5.84710 5.94616 6.65192 6.88484 6.92442 7.23643 7.52127 8.83123 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.054928 B = 0.004317 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.633261 B = 6483.730632 C = 6566.192710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.708 5.708 11 C 0.495 3.505 12 O -0.601 6.601 13 C -0.091 4.091 14 C -0.059 4.059 15 C -0.129 4.129 16 C -0.105 4.105 17 C -0.155 4.155 18 C 0.093 3.907 19 O -0.511 6.511 20 C -0.152 4.152 21 H 0.268 0.732 22 H -0.016 1.016 23 H -0.014 1.014 24 H 0.410 0.590 25 H 0.135 0.865 26 H 0.129 0.871 27 H 0.136 0.864 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.409 0.591 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.890 -17.760 0.414 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.358 5.358 11 C 0.283 3.717 12 O -0.482 6.482 13 C -0.130 4.130 14 C -0.060 4.060 15 C -0.147 4.147 16 C -0.123 4.123 17 C -0.174 4.174 18 C 0.049 3.951 19 O -0.324 6.324 20 C -0.171 4.171 21 H 0.077 0.923 22 H 0.002 0.998 23 H 0.004 0.996 24 H 0.246 0.754 25 H 0.153 0.847 26 H 0.147 0.853 27 H 0.154 0.846 28 H 0.171 0.829 29 H 0.164 0.836 30 H 0.268 0.732 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.397 -17.459 0.461 19.378 hybrid contribution 0.457 0.831 -0.239 0.978 sum 8.853 -16.628 0.221 18.839 Atomic orbital electron populations 1.70145 1.08390 1.28634 1.49977 1.26099 0.95751 1.04020 0.93806 0.85188 0.77878 0.76464 0.79565 1.18609 1.21203 1.18498 1.21608 0.94385 0.90516 1.52948 0.89587 1.18523 0.88787 0.84546 0.93888 1.46194 1.11228 1.05435 1.72926 1.21419 0.89811 0.84875 0.75629 1.90672 1.19711 1.85567 1.52290 1.20746 0.96546 0.87735 1.08000 1.19406 0.98409 0.94769 0.93402 1.21336 0.99336 0.96210 0.97857 1.21326 0.97039 0.95159 0.98770 1.21652 1.02032 1.01959 0.91726 1.18574 0.97295 0.93239 0.86007 1.84798 1.48383 1.63048 1.36201 1.21431 1.00317 0.96763 0.98569 0.92274 0.99841 0.99619 0.75362 0.84709 0.85347 0.84644 0.82943 0.83610 0.73196 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.99 42.27 29.54 68.60 2.03 44.30 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 5 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 7 C -0.56 -30.37 9.28 25.60 0.24 -30.13 16 8 H 0.09 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.27 14.78 5.43 85.63 0.46 15.24 16 10 N -0.71 -29.72 5.55 -466.79 -2.59 -32.31 16 11 C 0.49 19.79 7.82 87.66 0.69 20.48 16 12 O -0.60 -30.76 16.03 -3.05 -0.05 -30.81 16 13 C -0.09 -2.34 5.83 29.10 0.17 -2.17 16 14 C -0.06 -1.65 4.37 -19.88 -0.09 -1.74 16 15 C -0.13 -3.29 9.70 22.28 0.22 -3.07 16 16 C -0.11 -2.34 10.04 22.25 0.22 -2.11 16 17 C -0.16 -3.55 9.99 22.37 0.22 -3.32 16 18 C 0.09 2.41 6.70 22.51 0.15 2.56 16 19 O -0.51 -11.53 13.50 -92.48 -1.25 -12.78 16 20 C -0.15 -4.28 9.64 22.36 0.22 -4.06 16 21 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 22 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 23 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 24 H 0.41 13.78 8.32 -92.71 -0.77 13.01 16 25 H 0.13 2.54 8.09 -2.39 -0.02 2.52 16 26 H 0.13 2.55 8.08 -2.39 -0.02 2.53 16 27 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 28 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.41 4.44 9.06 -74.05 -0.67 3.77 16 31 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -78.42 281.46 1.10 -77.32 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -0.29 Total: 18.66 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 2.96 Total: -7.72 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -2.30 Total: -88.97 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -1.30 Total: -43.59 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -78.42 1.10 -77.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054156782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.913 kcal (2) G-P(sol) polarization free energy of solvation -78.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds