Wall clock time and date at job start Mon Mar 30 2020 03:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21372 * 120.00140 * 2 1 4 4 C 1.46212 * 119.99905 * 180.02562 * 2 1 3 5 5 C 1.39850 * 120.87631 * 174.14808 * 4 2 1 6 6 C 1.39213 * 118.87396 * 180.02562 * 5 4 2 7 7 C 1.35704 * 120.75637 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.03228 * 179.97438 * 7 6 5 9 9 N 1.35282 * 121.93121 * 0.24977 * 7 6 5 10 10 C 1.46506 * 119.48123 * 179.72652 * 9 7 6 11 11 C 1.50693 * 109.46950 * 89.99964 * 10 9 7 12 12 H 1.08003 * 120.00309 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00055 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99898 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00268 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47044 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47358 * 120.00164 * 15 13 11 18 18 H 1.48496 * 109.47449 * 240.00118 * 15 13 11 19 19 C 1.34769 * 121.03394 * 359.44232 * 9 7 6 20 20 O 1.21852 * 120.42100 * 180.29233 * 19 9 7 21 21 H 1.08995 * 109.46918 * 264.49691 * 1 2 3 22 22 H 1.09000 * 109.47080 * 24.49855 * 1 2 3 23 23 H 1.09005 * 109.47013 * 144.50118 * 1 2 3 24 24 H 1.08002 * 120.56685 * 359.97438 * 5 4 2 25 25 H 1.08007 * 119.62628 * 180.02562 * 6 5 4 26 26 H 1.09002 * 109.47032 * 359.97438 * 8 7 6 27 27 H 1.09004 * 109.46828 * 239.99458 * 8 7 6 28 28 H 1.09000 * 109.46789 * 119.99757 * 8 7 6 29 29 H 1.08993 * 109.46930 * 210.00318 * 10 9 7 30 30 H 1.09000 * 109.46955 * 330.00405 * 10 9 7 31 31 H 0.96996 * 120.00426 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1139 1.0511 0.0000 4 6 2.2381 -1.2662 -0.0006 5 6 3.6310 -1.2907 -0.1230 6 6 4.2846 -2.5198 -0.1191 7 6 3.5860 -3.6770 0.0007 8 6 4.3330 -4.9858 -0.0003 9 7 2.2381 -3.6905 0.1154 10 6 1.5374 -4.9715 0.2357 11 6 1.4169 -5.3433 1.6910 12 1 1.8214 -4.6906 2.4505 13 6 0.7894 -6.5164 2.0532 14 7 0.2964 -7.3111 1.1284 15 14 0.6394 -6.9771 3.8572 16 1 1.2700 -5.9227 4.6914 17 1 -0.7956 -7.1014 4.2187 18 1 1.3239 -8.2731 4.0958 19 6 1.5303 -2.5437 0.1265 20 8 0.3169 -2.5685 0.2357 21 1 -0.3633 -0.0985 1.0229 22 1 -0.3633 0.9351 -0.4261 23 1 -0.3633 -0.8367 -0.5968 24 1 4.1901 -0.3718 -0.2197 25 1 5.3601 -2.5529 -0.2125 26 1 5.4010 -4.7945 -0.1051 27 1 3.9905 -5.5990 -0.8339 28 1 4.1478 -5.5106 0.9369 29 1 0.5425 -4.8837 -0.2006 30 1 2.0984 -5.7433 -0.2913 31 1 -0.1447 -8.1365 1.3831 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057792961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:25 Heat of formation + Delta-G solvation = -52.989106 kcal Electronic energy + Delta-G solvation = -16486.682747 eV Core-core repulsion = 13733.379482 eV Total energy + Delta-G solvation = -2753.303265 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75350 -38.51868 -36.72991 -34.33696 -32.60922 -31.22245 -29.86356 -27.88793 -26.83055 -23.95497 -22.55641 -21.55725 -19.78766 -17.01228 -16.86762 -16.53316 -15.68701 -15.12379 -14.98792 -14.27044 -14.06220 -13.97556 -13.63884 -13.02065 -12.68876 -12.47004 -12.44392 -11.93276 -11.69312 -11.49069 -11.38009 -11.20701 -10.87869 -10.85149 -10.40790 -10.14922 -9.43287 -9.17352 -9.03504 -8.71984 -7.41932 -6.34879 -4.42558 0.79407 2.31986 2.77205 3.14555 3.23257 3.25042 3.35146 4.14710 4.24947 4.68071 4.78273 4.93610 5.03412 5.25295 5.51026 5.63519 5.70699 5.76456 5.95682 6.04791 6.20488 6.30182 6.37038 6.54321 6.60193 6.68463 6.96209 7.06312 7.59113 7.74313 7.79393 8.04667 8.55743 8.66806 9.24340 10.73624 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.027565 B = 0.008098 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.530976 B = 3456.702389 C = 4013.202097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.422 3.578 3 O -0.497 6.497 4 C -0.342 4.342 5 C 0.064 3.936 6 C -0.290 4.290 7 C 0.236 3.764 8 C -0.132 4.132 9 N -0.467 5.467 10 C 0.213 3.787 11 C -0.538 4.538 12 H 0.063 0.937 13 C 0.069 3.931 14 N -0.887 5.887 15 Si 0.905 3.095 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.531 3.469 20 O -0.523 6.523 21 H 0.091 0.909 22 H 0.068 0.932 23 H 0.101 0.899 24 H 0.136 0.864 25 H 0.142 0.858 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.604 4.716 -3.082 9.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.306 3.694 3 O -0.378 6.378 4 C -0.348 4.348 5 C 0.042 3.958 6 C -0.312 4.312 7 C 0.118 3.882 8 C -0.189 4.189 9 N -0.171 5.171 10 C 0.095 3.905 11 C -0.576 4.576 12 H 0.081 0.919 13 C -0.135 4.135 14 N -0.524 5.524 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.206 1.206 19 C 0.330 3.670 20 O -0.403 6.403 21 H 0.110 0.890 22 H 0.086 0.914 23 H 0.120 0.880 24 H 0.154 0.846 25 H 0.159 0.841 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.902 4.987 -3.039 9.041 hybrid contribution -0.123 -0.485 1.009 1.126 sum 6.779 4.502 -2.030 8.387 Atomic orbital electron populations 1.22229 0.93683 1.03791 1.04978 1.21623 0.91696 0.86396 0.69708 1.90482 1.72497 1.34013 1.40820 1.22276 0.94593 0.94556 1.23338 1.21911 0.92946 0.98051 0.82938 1.20175 1.00578 0.90476 1.20002 1.20888 0.83962 0.97643 0.85747 1.21243 0.99098 0.92936 1.05615 1.46111 1.05895 1.12069 1.52983 1.20087 0.94488 0.76430 0.99485 1.21191 1.39472 1.06292 0.90642 0.91881 1.24902 0.94378 0.95790 0.98451 1.69918 1.37005 1.12468 1.33030 0.86326 0.78289 0.78366 0.83879 1.19556 1.20535 1.20606 1.18092 0.87481 0.83049 0.78360 1.90825 1.12651 1.86113 1.50717 0.89037 0.91356 0.88028 0.84591 0.84068 0.90018 0.89415 0.87848 0.91951 0.92768 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.20 8.97 36.01 0.32 -2.87 16 2 C 0.42 7.86 7.19 -31.11 -0.22 7.64 16 3 O -0.50 -9.82 17.17 5.48 0.09 -9.72 16 4 C -0.34 -6.44 6.06 -102.73 -0.62 -7.06 16 5 C 0.06 1.00 9.71 -38.62 -0.38 0.63 16 6 C -0.29 -4.09 9.53 -40.13 -0.38 -4.47 16 7 C 0.24 3.85 6.64 -81.98 -0.54 3.30 16 8 C -0.13 -1.75 8.67 36.01 0.31 -1.44 16 9 N -0.47 -9.60 2.56 -114.41 -0.29 -9.90 16 10 C 0.21 5.01 4.60 -5.19 -0.02 4.99 16 11 C -0.54 -13.93 9.12 -34.44 -0.31 -14.25 16 12 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 13 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -24.11 13.29 55.43 0.74 -23.38 16 15 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 C 0.53 11.47 7.57 -12.90 -0.10 11.37 16 20 O -0.52 -12.65 13.30 5.05 0.07 -12.58 16 21 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.10 1.83 6.19 -51.93 -0.32 1.50 16 24 H 0.14 1.86 7.73 -52.49 -0.41 1.45 16 25 H 0.14 1.47 7.83 -52.48 -0.41 1.06 16 26 H 0.08 0.78 7.76 -51.93 -0.40 0.37 16 27 H 0.09 1.14 7.30 -51.93 -0.38 0.76 16 28 H 0.10 1.55 7.82 -51.93 -0.41 1.14 16 29 H 0.06 1.66 7.41 -51.93 -0.38 1.28 16 30 H 0.05 1.22 6.29 -51.93 -0.33 0.89 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 271.44 15.07 4.09 4.09 Total: -1.00 -30.22 271.44 -5.80 -36.02 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.43 Total: 0.52 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.05 Total: -0.45 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.44 Total: -33.27 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.16 Total: -22.31 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.22 -5.80 -36.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057792961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.973 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds