Wall clock time and date at job start Mon Mar 30 2020 03:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21372 * 120.00140 * 2 1 4 4 C 1.46212 * 119.99905 * 180.02562 * 2 1 3 5 5 C 1.39850 * 120.87631 * 174.14808 * 4 2 1 6 6 C 1.39213 * 118.87396 * 180.02562 * 5 4 2 7 7 C 1.35704 * 120.75637 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.03228 * 179.97438 * 7 6 5 9 9 N 1.35282 * 121.93121 * 0.24977 * 7 6 5 10 10 C 1.46506 * 119.48123 * 179.72652 * 9 7 6 11 11 C 1.50693 * 109.46950 * 89.99964 * 10 9 7 12 12 H 1.08003 * 120.00309 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00055 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99898 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00268 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47044 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47358 * 120.00164 * 15 13 11 18 18 H 1.48496 * 109.47449 * 240.00118 * 15 13 11 19 19 C 1.34769 * 121.03394 * 359.44232 * 9 7 6 20 20 O 1.21852 * 120.42100 * 180.29233 * 19 9 7 21 21 H 1.08995 * 109.46918 * 264.49691 * 1 2 3 22 22 H 1.09000 * 109.47080 * 24.49855 * 1 2 3 23 23 H 1.09005 * 109.47013 * 144.50118 * 1 2 3 24 24 H 1.08002 * 120.56685 * 359.97438 * 5 4 2 25 25 H 1.08007 * 119.62628 * 180.02562 * 6 5 4 26 26 H 1.09002 * 109.47032 * 359.97438 * 8 7 6 27 27 H 1.09004 * 109.46828 * 239.99458 * 8 7 6 28 28 H 1.09000 * 109.46789 * 119.99757 * 8 7 6 29 29 H 1.08993 * 109.46930 * 210.00318 * 10 9 7 30 30 H 1.09000 * 109.46955 * 330.00405 * 10 9 7 31 31 H 0.96996 * 120.00426 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1139 1.0511 0.0000 4 6 2.2381 -1.2662 -0.0006 5 6 3.6310 -1.2907 -0.1230 6 6 4.2846 -2.5198 -0.1191 7 6 3.5860 -3.6770 0.0007 8 6 4.3330 -4.9858 -0.0003 9 7 2.2381 -3.6905 0.1154 10 6 1.5374 -4.9715 0.2357 11 6 1.4169 -5.3433 1.6910 12 1 1.8214 -4.6906 2.4505 13 6 0.7894 -6.5164 2.0532 14 7 0.2964 -7.3111 1.1284 15 14 0.6394 -6.9771 3.8572 16 1 1.2700 -5.9227 4.6914 17 1 -0.7956 -7.1014 4.2187 18 1 1.3239 -8.2731 4.0958 19 6 1.5303 -2.5437 0.1265 20 8 0.3169 -2.5685 0.2357 21 1 -0.3633 -0.0985 1.0229 22 1 -0.3633 0.9351 -0.4261 23 1 -0.3633 -0.8367 -0.5968 24 1 4.1901 -0.3718 -0.2197 25 1 5.3601 -2.5529 -0.2125 26 1 5.4010 -4.7945 -0.1051 27 1 3.9905 -5.5990 -0.8339 28 1 4.1478 -5.5106 0.9369 29 1 0.5425 -4.8837 -0.2006 30 1 2.0984 -5.7433 -0.2913 31 1 -0.1447 -8.1365 1.3831 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057792961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:25 Heat of formation + Delta-G solvation = -71.514592 kcal Electronic energy + Delta-G solvation = -16487.486072 eV Core-core repulsion = 13733.379482 eV Total energy + Delta-G solvation = -2754.106590 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.25051 -39.98494 -38.29209 -35.97537 -34.41976 -32.58418 -31.22803 -29.72861 -28.10691 -25.77622 -23.97332 -23.05072 -21.27518 -18.94220 -18.36588 -18.03163 -17.12072 -16.75430 -16.70603 -15.83324 -15.55455 -15.46851 -14.96787 -14.45251 -14.24199 -13.99462 -13.66243 -13.56709 -13.15787 -13.07561 -12.88131 -12.73239 -12.54305 -12.31818 -12.24837 -11.84292 -10.93387 -10.81206 -10.72718 -10.62230 -8.87952 -8.34700 -6.49771 -0.57082 0.94272 1.30975 1.35324 1.39220 1.49224 1.79606 2.32662 2.72217 2.98000 3.32072 3.58124 3.59740 4.00135 4.21220 4.35586 4.61464 4.63177 4.67739 4.71948 4.80690 4.97515 5.01837 5.07777 5.16375 5.21829 5.30339 5.52507 5.69739 5.80680 6.24291 6.55702 6.59822 7.04285 7.21829 8.73365 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.027565 B = 0.008098 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.530976 B = 3456.702389 C = 4013.202097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.421 3.579 3 O -0.511 6.511 4 C -0.368 4.368 5 C 0.080 3.920 6 C -0.261 4.261 7 C 0.217 3.783 8 C -0.129 4.129 9 N -0.480 5.480 10 C 0.230 3.770 11 C -0.547 4.547 12 H 0.052 0.948 13 C 0.023 3.977 14 N -0.916 5.916 15 Si 0.965 3.035 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.264 1.264 19 C 0.514 3.486 20 O -0.570 6.570 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.166 0.834 25 H 0.196 0.804 26 H 0.131 0.869 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.019 0.981 30 H 0.064 0.936 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.371 5.040 -2.751 11.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.307 3.693 3 O -0.393 6.393 4 C -0.374 4.374 5 C 0.058 3.942 6 C -0.282 4.282 7 C 0.101 3.899 8 C -0.185 4.185 9 N -0.185 5.185 10 C 0.111 3.889 11 C -0.585 4.585 12 H 0.070 0.930 13 C -0.178 4.178 14 N -0.555 5.555 15 Si 0.790 3.210 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.188 1.188 19 C 0.316 3.684 20 O -0.454 6.454 21 H 0.107 0.893 22 H 0.109 0.891 23 H 0.104 0.896 24 H 0.183 0.817 25 H 0.213 0.787 26 H 0.149 0.851 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.724 5.311 -2.718 11.409 hybrid contribution -0.883 -0.556 0.853 1.348 sum 8.842 4.754 -1.865 10.211 Atomic orbital electron populations 1.22161 0.93046 1.04265 1.04702 1.21751 0.92233 0.86250 0.69115 1.90465 1.72760 1.34167 1.41947 1.22263 0.96113 0.93116 1.25870 1.22356 0.91596 1.00029 0.80222 1.20801 1.02819 0.88580 1.16020 1.21654 0.82290 1.00259 0.85657 1.21347 1.01595 0.91100 1.04466 1.45967 1.07692 1.10528 1.54274 1.19592 0.93011 0.78223 0.98103 1.21355 1.39444 1.06175 0.91561 0.93018 1.25678 0.93971 0.95775 1.02356 1.70002 1.37669 1.12948 1.34850 0.85396 0.77975 0.78590 0.79078 1.19543 1.20887 1.18837 1.18623 0.87370 0.84177 0.78227 1.90784 1.14506 1.86799 1.53285 0.89268 0.89090 0.89615 0.81696 0.78691 0.85077 0.89432 0.89815 0.96306 0.91831 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.35 8.97 71.24 0.64 -5.71 16 2 C 0.42 15.55 7.19 27.76 0.20 15.75 16 3 O -0.51 -19.51 17.17 -3.32 -0.06 -19.57 16 4 C -0.37 -13.62 6.06 -18.64 -0.11 -13.73 16 5 C 0.08 2.25 9.71 22.89 0.22 2.47 16 6 C -0.26 -6.16 9.53 21.92 0.21 -5.95 16 7 C 0.22 6.56 6.64 41.44 0.28 6.84 16 8 C -0.13 -3.02 8.67 71.24 0.62 -2.41 16 9 N -0.48 -19.92 2.56 -634.03 -1.62 -21.54 16 10 C 0.23 11.22 4.60 85.63 0.39 11.61 16 11 C -0.55 -28.99 9.12 25.60 0.23 -28.76 16 12 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 13 C 0.02 1.24 5.46 84.66 0.46 1.70 16 14 N -0.92 -50.69 13.29 21.45 0.28 -50.40 16 15 Si 0.97 41.99 29.54 68.60 2.03 44.01 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 19 C 0.51 22.81 7.57 86.42 0.65 23.46 16 20 O -0.57 -29.18 13.30 -4.84 -0.06 -29.24 16 21 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 22 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 23 H 0.09 3.24 6.19 -2.38 -0.01 3.23 16 24 H 0.17 3.73 7.73 -2.91 -0.02 3.70 16 25 H 0.20 2.59 7.83 -2.91 -0.02 2.57 16 26 H 0.13 1.76 7.76 -2.39 -0.02 1.74 16 27 H 0.09 2.08 7.30 -2.38 -0.02 2.07 16 28 H 0.08 2.37 7.82 -2.39 -0.02 2.35 16 29 H 0.02 1.07 7.41 -2.39 -0.02 1.05 16 30 H 0.06 2.93 6.29 -2.39 -0.02 2.91 16 31 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -68.24 271.44 5.50 -62.74 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.14 Total: 8.72 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 3.79 Total: 5.28 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -1.34 Total: -71.94 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -0.12 Total: -48.81 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -68.24 5.50 -62.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057792961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.779 kcal (2) G-P(sol) polarization free energy of solvation -68.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds