Wall clock time and date at job start Mon Mar 30 2020 03:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35912 * 117.00151 * 180.02562 * 11 10 9 13 13 C 1.38848 * 119.98243 * 359.71688 * 12 11 10 14 14 C 1.38240 * 120.23602 * 179.76665 * 13 12 11 15 15 C 1.38008 * 120.20875 * 0.51780 * 14 13 12 16 16 C 1.39566 * 119.96265 * 359.73773 * 15 14 13 17 17 C 1.47854 * 120.11424 * 179.97438 * 16 15 14 18 18 N 1.34778 * 120.00558 * 0.02910 * 17 16 15 19 19 O 1.21556 * 119.99899 * 180.02562 * 17 16 15 20 20 C 1.38454 * 119.98389 * 180.02562 * 12 11 10 21 21 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.08004 * 119.88169 * 0.02704 * 13 12 11 27 27 H 1.08010 * 119.89531 * 180.25887 * 14 13 12 28 28 H 1.08003 * 120.01654 * 179.76692 * 15 14 13 29 29 H 0.97000 * 119.99839 * 359.97438 * 18 17 16 30 30 H 0.96996 * 120.00042 * 180.02562 * 18 17 16 31 31 H 1.07997 * 120.10414 * 359.94968 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 8 5.4506 -2.6364 0.0034 12 6 6.0677 -3.8474 0.0040 13 6 5.3112 -5.0117 0.0094 14 6 5.9334 -6.2461 0.0052 15 6 7.3109 -6.3295 0.0063 16 6 8.0797 -5.1646 0.0062 17 6 9.5558 -5.2500 0.0080 18 7 10.1613 -6.4541 0.0092 19 8 10.2233 -4.2341 0.0084 20 6 7.4504 -3.9194 0.0057 21 1 -0.4849 0.8400 -0.0004 22 1 3.8746 -0.6799 0.8911 23 1 3.8752 -0.6803 -0.8888 24 1 3.6587 -3.1509 -0.8875 25 1 3.6580 -3.1497 0.8925 26 1 4.2328 -4.9526 0.0127 27 1 5.3395 -7.1483 0.0052 28 1 7.7938 -7.2956 0.0068 29 1 9.6286 -7.2648 0.0092 30 1 11.1296 -6.5100 0.0107 31 1 8.0399 -3.0146 0.0057 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057839698.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:19 Heat of formation + Delta-G solvation = -61.281001 kcal Electronic energy + Delta-G solvation = -15412.148287 eV Core-core repulsion = 12658.485459 eV Total energy + Delta-G solvation = -2753.662828 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36043 -39.15419 -36.99930 -34.01266 -33.36394 -31.32678 -30.86348 -29.44863 -25.52431 -23.98672 -22.38983 -21.17028 -20.14673 -18.68588 -17.38604 -16.90939 -16.24968 -15.89620 -15.57630 -15.21847 -14.83646 -14.36142 -14.07685 -13.76822 -13.18591 -12.92831 -12.55651 -12.02377 -11.76418 -11.58069 -10.93511 -10.87224 -10.27365 -10.21760 -10.06053 -9.96207 -9.85651 -9.38243 -9.08317 -8.64884 -8.13138 -6.16275 -4.17666 0.75664 1.39572 2.76765 3.17315 3.27840 3.35342 3.41003 3.71920 3.82013 4.37315 4.61071 4.77543 4.89963 5.12121 5.18029 5.36582 5.46812 5.82020 5.84338 5.87336 6.14520 6.26446 6.32073 6.42598 6.51074 6.62498 7.02850 7.08166 7.19085 7.58138 7.78711 8.03144 8.35102 8.83750 9.43989 10.96123 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.048527 B = 0.004538 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.857395 B = 6169.174752 C = 6725.585664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.071 3.929 11 O -0.315 6.315 12 C 0.139 3.861 13 C -0.184 4.184 14 C -0.086 4.086 15 C -0.137 4.137 16 C -0.107 4.107 17 C 0.566 3.434 18 N -0.852 5.852 19 O -0.538 6.538 20 C -0.100 4.100 21 H 0.266 0.734 22 H 0.029 0.971 23 H 0.024 0.976 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.138 0.862 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.401 0.599 30 H 0.404 0.596 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.336 -15.227 0.040 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.047 4.047 10 C -0.003 4.003 11 O -0.229 6.229 12 C 0.092 3.908 13 C -0.203 4.203 14 C -0.104 4.104 15 C -0.156 4.156 16 C -0.110 4.110 17 C 0.353 3.647 18 N -0.416 5.416 19 O -0.415 6.415 20 C -0.120 4.120 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.156 0.844 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.231 0.769 30 H 0.235 0.765 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 15.505 -14.143 0.043 20.986 hybrid contribution 0.165 0.191 -0.022 0.253 sum 15.670 -13.952 0.022 20.981 Atomic orbital electron populations 1.69889 1.06288 1.27281 1.50074 1.24928 0.94762 0.99236 0.94024 0.86760 0.80477 0.83236 0.78831 1.20012 1.21141 1.18704 1.20823 0.88267 0.94954 1.52567 0.90734 1.19593 0.96936 0.90108 0.98054 1.23146 0.74329 1.02246 1.00596 1.86169 1.24229 1.25411 1.87047 1.19024 0.91929 0.85583 0.94301 1.21653 1.01240 0.92256 1.05137 1.20863 0.94125 0.97305 0.98153 1.21034 0.94114 0.96813 1.03689 1.19508 0.92206 0.93836 1.05469 1.18279 0.87862 0.83386 0.75212 1.43731 1.11287 1.08244 1.78374 1.90827 1.66306 1.35027 1.49338 1.20496 0.91727 0.98010 1.01720 0.92402 0.95307 0.95726 0.92332 0.92316 0.84427 0.85239 0.85899 0.76916 0.76543 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.53 -14.68 9.66 -34.44 -0.33 -15.01 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.23 4.41 -27.89 -0.12 -0.35 16 10 C 0.07 1.41 4.68 37.16 0.17 1.58 16 11 O -0.32 -6.05 10.13 -19.46 -0.20 -6.24 16 12 C 0.14 2.25 6.68 -39.28 -0.26 1.99 16 13 C -0.18 -2.53 9.03 -39.35 -0.36 -2.89 16 14 C -0.09 -0.93 10.03 -39.66 -0.40 -1.33 16 15 C -0.14 -1.36 9.54 -39.17 -0.37 -1.74 16 16 C -0.11 -1.36 5.87 -104.99 -0.62 -1.97 16 17 C 0.57 6.99 8.05 -12.32 -0.10 6.89 16 18 N -0.85 -6.15 8.82 30.53 0.27 -5.88 16 19 O -0.54 -8.85 17.18 5.32 0.09 -8.76 16 20 C -0.10 -1.53 9.53 -39.02 -0.37 -1.90 16 21 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 23 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 24 H 0.06 1.11 7.67 -51.93 -0.40 0.71 16 25 H 0.06 1.11 7.65 -51.93 -0.40 0.71 16 26 H 0.14 1.84 6.28 -52.48 -0.33 1.51 16 27 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 28 H 0.12 0.73 6.40 -52.48 -0.34 0.39 16 29 H 0.40 1.70 6.86 -40.82 -0.28 1.42 16 30 H 0.40 2.30 8.93 -40.82 -0.36 1.94 16 31 H 0.14 2.28 7.65 -52.49 -0.40 1.88 16 LS Contribution 271.82 15.07 4.10 4.10 Total: -1.00 -33.16 271.82 -5.77 -38.93 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.28 Total: 0.04 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.86 Total: -12.74 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 1.04 Total: -32.15 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.11 Total: -15.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.16 -5.77 -38.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057839698.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.351 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds