Wall clock time and date at job start Mon Mar 30 2020 03:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35912 * 117.00151 * 180.02562 * 11 10 9 13 13 C 1.38848 * 119.98243 * 359.71688 * 12 11 10 14 14 C 1.38240 * 120.23602 * 179.76665 * 13 12 11 15 15 C 1.38008 * 120.20875 * 0.51780 * 14 13 12 16 16 C 1.39566 * 119.96265 * 359.73773 * 15 14 13 17 17 C 1.47854 * 120.11424 * 179.97438 * 16 15 14 18 18 N 1.34778 * 120.00558 * 0.02910 * 17 16 15 19 19 O 1.21556 * 119.99899 * 180.02562 * 17 16 15 20 20 C 1.38454 * 119.98389 * 180.02562 * 12 11 10 21 21 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.08004 * 119.88169 * 0.02704 * 13 12 11 27 27 H 1.08010 * 119.89531 * 180.25887 * 14 13 12 28 28 H 1.08003 * 120.01654 * 179.76692 * 15 14 13 29 29 H 0.97000 * 119.99839 * 359.97438 * 18 17 16 30 30 H 0.96996 * 120.00042 * 180.02562 * 18 17 16 31 31 H 1.07997 * 120.10414 * 359.94968 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 8 5.4506 -2.6364 0.0034 12 6 6.0677 -3.8474 0.0040 13 6 5.3112 -5.0117 0.0094 14 6 5.9334 -6.2461 0.0052 15 6 7.3109 -6.3295 0.0063 16 6 8.0797 -5.1646 0.0062 17 6 9.5558 -5.2500 0.0080 18 7 10.1613 -6.4541 0.0092 19 8 10.2233 -4.2341 0.0084 20 6 7.4504 -3.9194 0.0057 21 1 -0.4849 0.8400 -0.0004 22 1 3.8746 -0.6799 0.8911 23 1 3.8752 -0.6803 -0.8888 24 1 3.6587 -3.1509 -0.8875 25 1 3.6580 -3.1497 0.8925 26 1 4.2328 -4.9526 0.0127 27 1 5.3395 -7.1483 0.0052 28 1 7.7938 -7.2956 0.0068 29 1 9.6286 -7.2648 0.0092 30 1 11.1296 -6.5100 0.0107 31 1 8.0399 -3.0146 0.0057 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057839698.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:19 Heat of formation + Delta-G solvation = -86.349569 kcal Electronic energy + Delta-G solvation = -15413.235342 eV Core-core repulsion = 12658.485459 eV Total energy + Delta-G solvation = -2754.749883 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.42373 -40.29671 -38.16328 -35.44994 -34.83073 -32.94250 -32.06991 -30.66240 -27.21945 -25.19451 -23.41034 -22.81043 -21.36400 -19.78291 -18.93148 -18.11798 -17.46098 -17.04038 -16.95173 -16.53626 -16.12895 -15.85325 -15.17042 -14.87603 -14.69091 -14.43627 -14.26347 -13.39273 -13.19994 -12.81713 -12.59262 -12.36314 -12.07270 -11.80456 -11.60477 -11.46942 -11.24082 -10.82593 -10.76598 -10.07526 -9.26811 -8.36148 -6.42456 -0.24865 0.39377 1.34874 1.36723 1.49031 1.79184 2.12838 2.31974 2.62578 2.82216 2.99127 3.77452 3.82088 4.06509 4.12608 4.18495 4.21778 4.39344 4.52312 4.64934 4.87493 5.08566 5.19052 5.28448 5.29280 5.36381 5.49622 5.68009 5.85752 6.14859 6.38927 6.44654 6.63258 7.23018 7.25945 8.79344 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.048527 B = 0.004538 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.857395 B = 6169.174752 C = 6725.585664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.535 4.535 8 H 0.047 0.953 9 C -0.009 4.009 10 C 0.085 3.915 11 O -0.339 6.339 12 C 0.104 3.896 13 C -0.190 4.190 14 C -0.078 4.078 15 C -0.111 4.111 16 C -0.114 4.114 17 C 0.564 3.436 18 N -0.821 5.821 19 O -0.590 6.590 20 C -0.122 4.122 21 H 0.270 0.730 22 H 0.025 0.975 23 H 0.024 0.976 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.137 0.863 27 H 0.171 0.829 28 H 0.176 0.824 29 H 0.420 0.580 30 H 0.415 0.585 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.902 -17.627 0.016 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.182 4.182 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.573 4.573 8 H 0.065 0.935 9 C -0.046 4.046 10 C 0.011 3.989 11 O -0.253 6.253 12 C 0.058 3.942 13 C -0.209 4.209 14 C -0.096 4.096 15 C -0.129 4.129 16 C -0.117 4.117 17 C 0.350 3.650 18 N -0.387 5.387 19 O -0.471 6.471 20 C -0.142 4.142 21 H 0.079 0.921 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.155 0.845 27 H 0.188 0.812 28 H 0.193 0.807 29 H 0.253 0.747 30 H 0.248 0.752 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.094 -16.622 0.019 23.843 hybrid contribution -0.273 0.707 -0.014 0.758 sum 16.821 -15.914 0.005 23.156 Atomic orbital electron populations 1.70011 1.07979 1.28486 1.51573 1.25820 0.95575 1.03109 0.93716 0.85736 0.79388 0.78689 0.79377 1.19026 1.20379 1.17768 1.21101 0.90348 0.94014 1.51842 0.93499 1.19461 0.94527 0.92943 0.97707 1.22744 0.75433 0.99583 1.01176 1.86069 1.23197 1.27678 1.88359 1.19226 0.92323 0.85341 0.97274 1.21828 1.01266 0.92735 1.05035 1.21346 0.94849 0.97316 0.96045 1.21582 0.93770 0.97788 0.99772 1.19675 0.92808 0.93790 1.05415 1.18314 0.87626 0.84046 0.74997 1.43475 1.12139 1.07263 1.75776 1.90811 1.67113 1.37103 1.52088 1.20464 0.91403 0.98749 1.03549 0.92072 0.95645 0.95715 0.91762 0.91794 0.84472 0.81187 0.80718 0.74702 0.75238 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.82 13.96 21.45 0.30 -57.52 16 2 C 0.02 0.94 5.47 84.65 0.46 1.40 16 3 Si 0.94 44.53 27.47 68.60 1.88 46.41 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.25 -11.51 6.54 99.48 0.65 -10.85 16 7 C -0.54 -30.41 9.66 25.60 0.25 -30.17 16 8 H 0.05 2.84 7.99 -2.91 -0.02 2.82 16 9 C -0.01 -0.43 4.41 29.85 0.13 -0.30 16 10 C 0.08 3.44 4.68 71.98 0.34 3.77 16 11 O -0.34 -13.34 10.13 -92.56 -0.94 -14.28 16 12 C 0.10 3.40 6.68 22.47 0.15 3.55 16 13 C -0.19 -4.93 9.03 22.42 0.20 -4.73 16 14 C -0.08 -1.35 10.03 22.22 0.22 -1.13 16 15 C -0.11 -1.69 9.54 22.54 0.21 -1.47 16 16 C -0.11 -2.67 5.87 -20.10 -0.12 -2.78 16 17 C 0.56 12.92 8.05 86.79 0.70 13.62 16 18 N -0.82 -8.85 8.82 -175.59 -1.55 -10.40 16 19 O -0.59 -19.50 17.18 -3.89 -0.07 -19.57 16 20 C -0.12 -3.80 9.53 22.63 0.22 -3.59 16 21 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 22 H 0.03 1.23 7.20 -2.39 -0.02 1.22 16 23 H 0.02 1.18 7.57 -2.39 -0.02 1.16 16 24 H 0.06 2.47 7.67 -2.39 -0.02 2.45 16 25 H 0.06 2.46 7.65 -2.39 -0.02 2.44 16 26 H 0.14 3.52 6.28 -2.91 -0.02 3.50 16 27 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 28 H 0.18 0.82 6.40 -2.91 -0.02 0.80 16 29 H 0.42 1.32 6.86 -92.71 -0.64 0.69 16 30 H 0.41 3.35 8.93 -92.71 -0.83 2.53 16 31 H 0.12 4.14 7.65 -2.91 -0.02 4.12 16 Total: -1.00 -75.40 271.82 2.05 -73.36 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -0.35 Total: 3.81 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 2.76 Total: -21.81 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -1.25 Total: -67.92 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.00 Total: -33.85 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -75.40 2.05 -73.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057839698.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.993 kcal (2) G-P(sol) polarization free energy of solvation -75.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds