Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00115 * 2 1 4 4 C 1.50706 * 109.47161 * 179.97438 * 3 2 1 5 5 N 1.32134 * 118.48353 * 90.00237 * 4 3 2 6 6 C 1.33803 * 121.47746 * 180.02562 * 5 4 3 7 7 C 1.40496 * 120.84743 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00109 * 180.02562 * 7 6 5 9 9 C 1.40401 * 120.00148 * 0.02562 * 7 6 5 10 10 N 1.30534 * 120.00010 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99924 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47154 * 89.99823 * 11 9 7 13 13 H 1.48501 * 109.47033 * 209.99638 * 11 9 7 14 14 H 1.48491 * 109.47059 * 329.99816 * 11 9 7 15 15 C 1.46819 * 118.30227 * 359.97438 * 6 5 4 16 16 N 1.31192 * 135.23933 * 180.02562 * 15 6 5 17 17 N 1.28844 * 109.49346 * 179.97438 * 16 15 6 18 18 C 1.31051 * 110.23709 * 0.02562 * 17 16 15 19 19 N 1.35322 * 107.43250 * 359.97438 * 18 17 16 20 20 N 1.31139 * 118.49228 * 270.00467 * 4 3 2 21 21 H 1.09006 * 109.46771 * 59.99888 * 1 2 3 22 22 H 1.08999 * 109.47053 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47144 * 300.00424 * 1 2 3 24 24 H 1.09005 * 109.47138 * 60.00161 * 3 2 1 25 25 H 1.08995 * 109.47415 * 299.99956 * 3 2 1 26 26 H 0.97000 * 119.99993 * 180.02562 * 10 9 7 27 27 H 1.08007 * 126.28353 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.1412 1.1365 -1.1605 6 6 5.4733 1.0304 -1.2298 7 6 6.1281 0.9779 -2.4717 8 1 7.2040 0.8918 -2.5117 9 6 5.3839 1.0373 -3.6608 10 7 4.0836 1.1408 -3.6125 11 14 6.2546 0.9667 -5.3120 12 1 6.3732 -0.4476 -5.7490 13 1 5.4730 1.7313 -6.3168 14 1 7.6096 1.5601 -5.1828 15 6 6.2330 0.9704 0.0251 16 7 7.5022 0.8699 0.3417 17 7 7.6259 0.8608 1.6242 18 6 6.4494 0.9539 2.1938 19 7 5.5260 1.0268 1.2073 20 7 4.1357 1.1371 1.1535 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.6886 1.8464 0.8900 25 1 1.6887 1.8464 -0.8899 26 1 3.5695 1.1814 -4.4340 27 1 6.2529 0.9703 3.2557 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074206243.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = 93.940901 kcal Electronic energy + Delta-G solvation = -16113.853126 eV Core-core repulsion = 13295.673632 eV Total energy + Delta-G solvation = -2818.179494 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.081 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.94376 -38.11162 -36.90144 -34.73136 -32.56016 -31.30331 -29.29919 -27.57262 -27.34146 -25.36446 -23.15202 -21.76838 -20.85014 -18.40862 -17.95097 -16.17382 -16.09165 -15.68916 -15.22293 -15.09029 -14.73007 -14.28804 -13.37798 -12.33743 -12.21887 -12.06276 -11.81829 -11.68798 -11.49528 -11.18687 -11.02716 -10.72490 -10.67195 -10.37372 -9.61451 -9.49061 -9.31153 -8.85368 -7.99686 -7.79303 -7.06599 -5.47065 1.86918 2.50898 2.79412 2.81902 2.87517 3.12040 3.51561 3.65227 3.94852 4.41473 5.03346 5.12329 5.23940 5.34373 5.51260 5.59840 5.72169 5.82899 5.84365 6.11626 6.35444 6.46919 6.67311 6.92794 7.32694 7.49760 7.54707 7.78200 8.07596 8.54070 9.47859 9.51637 9.83097 Molecular weight = 235.08amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.012083 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.963122 B = 2316.663310 C = 3930.561608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.156 3.844 4 C 0.335 3.665 5 N -0.565 5.565 6 C 0.290 3.710 7 C -0.294 4.294 8 H 0.114 0.886 9 C 0.045 3.955 10 N -0.644 5.644 11 Si 0.931 3.069 12 H -0.259 1.259 13 H -0.268 1.268 14 H -0.250 1.250 15 C 0.109 3.891 16 N -0.274 5.274 17 N -0.307 5.307 18 C 0.151 3.849 19 N -0.279 5.279 20 N -0.444 5.444 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.291 0.709 27 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.770 0.780 -1.426 5.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.297 6.297 3 C 0.076 3.924 4 C 0.057 3.943 5 N -0.300 5.300 6 C 0.157 3.843 7 C -0.330 4.330 8 H 0.132 0.868 9 C -0.189 4.189 10 N -0.263 5.263 11 Si 0.752 3.248 12 H -0.184 1.184 13 H -0.192 1.192 14 H -0.174 1.174 15 C -0.158 4.158 16 N -0.122 5.122 17 N -0.152 5.152 18 C -0.137 4.137 19 N -0.050 5.050 20 N -0.285 5.285 21 H 0.060 0.940 22 H 0.100 0.900 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.193 0.574 -1.287 5.381 hybrid contribution -0.706 0.226 -0.259 0.785 sum -5.899 0.800 -1.545 6.150 Atomic orbital electron populations 1.22683 0.81392 1.02347 0.99692 1.87957 1.19086 1.27313 1.95364 1.20664 0.85870 0.84954 1.00870 1.22906 0.95918 0.89380 0.86078 1.69320 1.05965 1.32266 1.22440 1.19160 0.86786 0.91097 0.87276 1.20230 0.96531 1.27882 0.88358 0.86836 1.26507 0.95173 0.94585 1.02619 1.70035 1.06790 1.18069 1.31380 0.85889 0.80707 0.80156 0.78069 1.18380 1.19217 1.17363 1.25308 0.90202 1.08058 0.92224 1.74189 1.13609 1.19202 1.05181 1.74424 1.19676 1.20268 1.00854 1.25732 0.83234 1.08649 0.96062 1.47476 1.06389 1.44750 1.06362 1.75980 0.83944 1.43521 1.25079 0.94034 0.89975 0.94399 0.92237 0.90440 0.89750 0.77231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 11.01 101.05 1.11 1.60 15 2 O -0.38 -7.48 10.69 -35.23 -0.38 -7.86 15 3 C 0.16 3.09 6.33 36.01 0.23 3.32 15 4 C 0.34 8.31 7.33 -157.46 -1.15 7.15 15 5 N -0.57 -14.93 7.89 -7.46 -0.06 -14.99 15 6 C 0.29 7.75 6.73 -82.69 -0.56 7.20 15 7 C -0.29 -7.11 9.20 -37.92 -0.35 -7.46 15 8 H 0.11 2.59 7.85 -52.48 -0.41 2.18 15 9 C 0.04 0.97 5.50 -17.29 -0.10 0.88 15 10 N -0.64 -14.54 11.52 55.57 0.64 -13.90 15 11 Si 0.93 15.61 29.56 -169.99 -5.03 10.59 15 12 H -0.26 -4.33 7.11 56.52 0.40 -3.93 15 13 H -0.27 -4.31 7.11 56.52 0.40 -3.91 15 14 H -0.25 -4.18 7.11 56.52 0.40 -3.78 15 15 C 0.11 2.92 8.03 -154.00 -1.24 1.68 15 16 N -0.27 -7.21 12.26 32.39 0.40 -6.81 15 17 N -0.31 -7.45 12.21 29.75 0.36 -7.09 15 18 C 0.15 3.40 13.19 -89.66 -1.18 2.21 15 19 N -0.28 -7.16 4.12 -11.78 -0.05 -7.21 15 20 N -0.44 -11.27 11.83 32.30 0.38 -10.89 15 21 H 0.04 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.04 0.44 8.14 -51.93 -0.42 0.02 15 24 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 25 H 0.08 1.44 8.14 -51.93 -0.42 1.02 15 26 H 0.29 5.68 8.29 -40.82 -0.34 5.34 15 27 H 0.21 3.62 8.06 -52.48 -0.42 3.20 15 LS Contribution 253.64 15.07 3.82 3.82 Total: -1.00 -31.15 253.64 -5.22 -36.38 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -2.08 Total: 1.38 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: -3.23 Total: 16.58 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 1.68 Total: -60.89 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.38 Total: -7.86 kcal Atomic # 14 Polarization: 15.61 SS G_CDS: -5.03 Total: 10.59 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.15 -5.22 -36.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074206243.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.317 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds