Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00115 * 2 1 4 4 C 1.50706 * 109.47161 * 179.97438 * 3 2 1 5 5 N 1.32134 * 118.48353 * 90.00237 * 4 3 2 6 6 C 1.33803 * 121.47746 * 180.02562 * 5 4 3 7 7 C 1.40496 * 120.84743 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00109 * 180.02562 * 7 6 5 9 9 C 1.40401 * 120.00148 * 0.02562 * 7 6 5 10 10 N 1.30534 * 120.00010 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99924 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47154 * 89.99823 * 11 9 7 13 13 H 1.48501 * 109.47033 * 209.99638 * 11 9 7 14 14 H 1.48491 * 109.47059 * 329.99816 * 11 9 7 15 15 C 1.46819 * 118.30227 * 359.97438 * 6 5 4 16 16 N 1.31192 * 135.23933 * 180.02562 * 15 6 5 17 17 N 1.28844 * 109.49346 * 179.97438 * 16 15 6 18 18 C 1.31051 * 110.23709 * 0.02562 * 17 16 15 19 19 N 1.35322 * 107.43250 * 359.97438 * 18 17 16 20 20 N 1.31139 * 118.49228 * 270.00467 * 4 3 2 21 21 H 1.09006 * 109.46771 * 59.99888 * 1 2 3 22 22 H 1.08999 * 109.47053 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47144 * 300.00424 * 1 2 3 24 24 H 1.09005 * 109.47138 * 60.00161 * 3 2 1 25 25 H 1.08995 * 109.47415 * 299.99956 * 3 2 1 26 26 H 0.97000 * 119.99993 * 180.02562 * 10 9 7 27 27 H 1.08007 * 126.28353 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.1412 1.1365 -1.1605 6 6 5.4733 1.0304 -1.2298 7 6 6.1281 0.9779 -2.4717 8 1 7.2040 0.8918 -2.5117 9 6 5.3839 1.0373 -3.6608 10 7 4.0836 1.1408 -3.6125 11 14 6.2546 0.9667 -5.3120 12 1 6.3732 -0.4476 -5.7490 13 1 5.4730 1.7313 -6.3168 14 1 7.6096 1.5601 -5.1828 15 6 6.2330 0.9704 0.0251 16 7 7.5022 0.8699 0.3417 17 7 7.6259 0.8608 1.6242 18 6 6.4494 0.9539 2.1938 19 7 5.5260 1.0268 1.2073 20 7 4.1357 1.1371 1.1535 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.6886 1.8464 0.8900 25 1 1.6887 1.8464 -0.8899 26 1 3.5695 1.1814 -4.4340 27 1 6.2529 0.9703 3.2557 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074206243.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = 73.563778 kcal Electronic energy + Delta-G solvation = -16114.736744 eV Core-core repulsion = 13295.673632 eV Total energy + Delta-G solvation = -2819.063112 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.081 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.83395 -39.80621 -38.43633 -36.50440 -34.40281 -33.08458 -31.17984 -29.21313 -29.01216 -26.68640 -25.02040 -23.54031 -22.70487 -20.18408 -19.80275 -17.96825 -17.58615 -17.32110 -17.03421 -16.42630 -16.26520 -15.93086 -14.89464 -14.14141 -13.71468 -13.46840 -13.41718 -13.32078 -13.24746 -12.94632 -12.42771 -12.36514 -12.19360 -11.96128 -11.40583 -11.27434 -10.72851 -10.66132 -9.84277 -9.68261 -8.78671 -7.35296 0.03181 0.64591 1.31507 1.41359 1.49305 1.60508 1.79504 2.12008 2.30346 2.86274 3.22939 3.28934 3.52951 3.74272 4.04582 4.19242 4.47136 4.57430 4.61552 4.62859 4.67831 4.84659 4.86209 5.09323 5.52564 5.72347 5.96515 6.19417 6.24589 6.67826 7.58461 7.86681 7.97286 Molecular weight = 235.08amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.012083 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.963122 B = 2316.663310 C = 3930.561608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.414 6.414 3 C 0.165 3.835 4 C 0.317 3.683 5 N -0.584 5.584 6 C 0.244 3.756 7 C -0.292 4.292 8 H 0.119 0.881 9 C 0.006 3.994 10 N -0.668 5.668 11 Si 1.011 2.989 12 H -0.255 1.255 13 H -0.252 1.252 14 H -0.249 1.249 15 C 0.084 3.916 16 N -0.292 5.292 17 N -0.322 5.322 18 C 0.165 3.835 19 N -0.294 5.294 20 N -0.460 5.460 21 H 0.054 0.946 22 H 0.098 0.902 23 H 0.058 0.942 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.306 0.694 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 0.839 -2.396 6.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.332 6.332 3 C 0.085 3.915 4 C 0.039 3.961 5 N -0.320 5.320 6 C 0.113 3.887 7 C -0.328 4.328 8 H 0.137 0.863 9 C -0.225 4.225 10 N -0.287 5.287 11 Si 0.827 3.173 12 H -0.179 1.179 13 H -0.175 1.175 14 H -0.172 1.172 15 C -0.183 4.183 16 N -0.139 5.139 17 N -0.166 5.166 18 C -0.123 4.123 19 N -0.066 5.066 20 N -0.302 5.302 21 H 0.073 0.927 22 H 0.116 0.884 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -5.807 0.634 -2.241 6.257 hybrid contribution -0.562 0.186 0.039 0.593 sum -6.369 0.820 -2.202 6.789 Atomic orbital electron populations 1.22978 0.78296 1.04021 1.01376 1.87894 1.22445 1.27237 1.95670 1.20671 0.83153 0.85483 1.02171 1.23806 0.98058 0.88525 0.85670 1.69341 1.05872 1.33523 1.23247 1.19679 0.87545 0.93325 0.88163 1.20728 0.97189 1.25911 0.88978 0.86289 1.27514 0.95739 0.93779 1.05512 1.70034 1.08289 1.16732 1.33596 0.84750 0.79390 0.80389 0.72788 1.17884 1.17493 1.17204 1.25553 0.90575 1.09044 0.93148 1.74110 1.13702 1.19853 1.06256 1.74350 1.20756 1.21267 1.00267 1.26705 0.82118 1.05838 0.97591 1.47793 1.06924 1.45229 1.06610 1.75967 0.83636 1.45139 1.25434 0.92691 0.88373 0.92296 0.90050 0.89799 0.88123 0.72467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 15 2 O -0.41 -16.00 10.69 -148.98 -1.59 -17.59 15 3 C 0.16 6.44 6.33 71.24 0.45 6.89 15 4 C 0.32 15.90 7.33 138.84 1.02 16.92 15 5 N -0.58 -31.43 7.89 -177.50 -1.40 -32.83 15 6 C 0.24 13.35 6.73 41.64 0.28 13.63 15 7 C -0.29 -14.27 9.20 23.35 0.21 -14.05 15 8 H 0.12 5.48 7.85 -2.91 -0.02 5.45 15 9 C 0.01 0.24 5.50 85.41 0.47 0.71 15 10 N -0.67 -29.75 11.52 21.90 0.25 -29.50 15 11 Si 1.01 30.47 29.56 68.60 2.03 32.50 15 12 H -0.25 -7.48 7.11 99.48 0.71 -6.78 15 13 H -0.25 -6.91 7.11 99.48 0.71 -6.20 15 14 H -0.25 -7.40 7.11 99.48 0.71 -6.69 15 15 C 0.08 4.60 8.03 135.83 1.09 5.69 15 16 N -0.29 -15.57 12.26 -51.43 -0.63 -16.20 15 17 N -0.32 -15.61 12.21 -59.80 -0.73 -16.34 15 18 C 0.17 7.29 13.19 180.01 2.37 9.67 15 19 N -0.29 -15.22 4.12 -191.20 -0.79 -16.01 15 20 N -0.46 -23.47 11.83 -51.73 -0.61 -24.08 15 21 H 0.05 1.22 8.14 -2.38 -0.02 1.20 15 22 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 15 24 H 0.08 2.74 8.14 -2.38 -0.02 2.72 15 25 H 0.08 3.08 8.14 -2.39 -0.02 3.07 15 26 H 0.31 11.59 8.29 -92.71 -0.77 10.82 15 27 H 0.26 8.26 8.06 -2.91 -0.02 8.24 15 Total: -1.00 -68.38 253.64 4.88 -63.50 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 1.21 Total: 15.14 kcal Atomic # 6 Polarization: 34.27 SS G_CDS: 7.15 Total: 41.42 kcal Atomic # 7 Polarization: -131.06 SS G_CDS: -3.91 Total: -134.97 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -1.59 Total: -17.59 kcal Atomic # 14 Polarization: 30.47 SS G_CDS: 2.03 Total: 32.50 kcal Total: -68.38 4.88 -63.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074206243.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.061 kcal (2) G-P(sol) polarization free energy of solvation -68.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds