Wall clock time and date at job start Mon Mar 30 2020 03:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99746 * 2 1 4 4 H 1.48496 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47085 * 300.00557 * 3 2 1 6 6 H 1.48499 * 109.46727 * 60.00183 * 3 2 1 7 7 C 1.37874 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00132 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99971 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.12595 * 299.47930 * 9 7 2 11 11 N 1.46522 * 109.33463 * 58.76884 * 9 7 2 12 12 C 1.47161 * 110.30514 * 172.72953 * 11 9 7 13 13 C 1.52890 * 108.67536 * 289.03699 * 12 11 9 14 14 C 1.50718 * 109.97416 * 50.23085 * 13 12 11 15 15 C 1.38984 * 118.46163 * 163.16494 * 14 13 12 16 16 O 1.35989 * 119.89326 * 359.78358 * 15 14 13 17 17 C 1.38975 * 120.20979 * 179.81548 * 15 14 13 18 18 O 1.35994 * 120.16003 * 179.97438 * 17 15 14 19 19 C 1.38570 * 119.67217 * 359.95689 * 17 15 14 20 20 C 1.38025 * 119.87126 * 0.09331 * 19 17 15 21 21 C 1.37884 * 121.67571 * 343.10791 * 14 13 12 22 22 H 0.97000 * 120.00230 * 359.97438 * 1 2 3 23 23 H 1.00896 * 110.80811 * 49.40412 * 11 9 7 24 24 H 1.09002 * 109.63241 * 169.23114 * 12 11 9 25 25 H 1.09005 * 109.62942 * 48.84238 * 12 11 9 26 26 H 1.09004 * 109.38616 * 170.38506 * 13 12 11 27 27 H 1.09002 * 109.38793 * 290.08068 * 13 12 11 28 28 H 0.96704 * 113.99963 * 89.99901 * 16 15 14 29 29 H 0.96695 * 114.00546 * 269.97667 * 18 17 15 30 30 H 1.07998 * 120.06488 * 180.02562 * 19 17 15 31 31 H 1.07998 * 119.72860 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6341 -2.5553 0.8962 11 7 0.3873 -2.5606 -1.1824 12 6 -0.2266 -3.8931 -1.2975 13 6 0.8547 -4.8975 -1.6969 14 6 2.0473 -4.7597 -0.7856 15 6 2.9746 -5.7942 -0.7471 16 8 2.7897 -6.8991 -1.5182 17 6 4.0897 -5.7035 0.0773 18 8 4.9961 -6.7167 0.1146 19 6 4.2735 -4.5755 0.8608 20 6 3.3489 -3.5516 0.8194 21 6 2.2336 -3.6412 -0.0011 22 1 -0.4850 0.8400 0.0004 23 1 0.9044 -2.3275 -2.0168 24 1 -1.0064 -3.8725 -2.0588 25 1 -0.6582 -4.1815 -0.3390 26 1 0.4554 -5.9088 -1.6198 27 1 1.1618 -4.7087 -2.7256 28 1 3.1893 -6.8370 -2.3966 29 1 4.8051 -7.3910 0.7807 30 1 5.1380 -4.4982 1.5035 31 1 3.4947 -2.6733 1.4308 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075794256.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:56 Heat of formation + Delta-G solvation = -83.721713 kcal Electronic energy + Delta-G solvation = -16688.287939 eV Core-core repulsion = 13933.652008 eV Total energy + Delta-G solvation = -2754.635931 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.46788 -39.00885 -37.86272 -36.20296 -34.80088 -32.36546 -30.88720 -29.17571 -27.24088 -24.28288 -24.18917 -22.70914 -21.14906 -19.23846 -18.73062 -18.45692 -17.20388 -16.72876 -16.60447 -16.08081 -15.48772 -15.14768 -14.79615 -14.52528 -14.08388 -13.82608 -13.51635 -13.35692 -12.83159 -12.80246 -12.61199 -12.28164 -12.19174 -11.93716 -11.85043 -11.11145 -10.92089 -10.56157 -9.50774 -9.22545 -8.72281 -7.98169 -6.19669 0.26706 0.32969 1.44227 1.47580 1.57158 2.45105 2.60823 3.15423 3.23410 3.41535 3.86043 3.94805 4.17272 4.24767 4.32749 4.46437 4.62882 4.69092 4.92561 4.99910 5.07543 5.20726 5.31231 5.37200 5.50880 5.66325 5.77720 5.85946 6.19476 6.61239 6.66446 6.93021 7.04906 7.07293 7.52395 9.05115 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.031200 B = 0.008482 C = 0.006973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.233532 B = 3300.329856 C = 4014.777555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.036 3.964 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.255 3.745 10 H 0.012 0.988 11 N -0.659 5.659 12 C 0.053 3.947 13 C -0.098 4.098 14 C -0.114 4.114 15 C 0.073 3.927 16 O -0.493 6.493 17 C 0.063 3.937 18 O -0.497 6.497 19 C -0.138 4.138 20 C -0.107 4.107 21 C -0.093 4.093 22 H 0.256 0.744 23 H 0.324 0.676 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.402 0.598 29 H 0.404 0.596 30 H 0.149 0.851 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.732 -10.909 -1.745 12.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.168 4.168 3 Si 0.775 3.225 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.583 4.583 8 H 0.076 0.924 9 C 0.146 3.854 10 H 0.030 0.970 11 N -0.286 5.286 12 C -0.077 4.077 13 C -0.137 4.137 14 C -0.115 4.115 15 C 0.027 3.973 16 O -0.305 6.305 17 C 0.018 3.982 18 O -0.309 6.309 19 C -0.156 4.156 20 C -0.126 4.126 21 C -0.095 4.095 22 H 0.065 0.935 23 H 0.141 0.859 24 H 0.100 0.900 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.259 0.741 29 H 0.262 0.738 30 H 0.166 0.834 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.946 -10.411 -1.398 11.611 hybrid contribution 1.018 0.393 -0.155 1.102 sum 5.965 -10.018 -1.553 11.762 Atomic orbital electron populations 1.70252 1.07014 1.26444 1.47659 1.25686 0.95389 1.01797 0.93977 0.85677 0.79155 0.80334 0.77375 1.19300 1.20930 1.20869 1.21311 0.92505 0.90525 1.54005 0.92387 1.17848 0.87424 0.89883 0.90207 0.97018 1.61141 1.37213 1.24780 1.05437 1.22107 0.96411 0.88525 1.00706 1.21001 0.93572 1.01478 0.97670 1.20076 0.98309 0.92866 1.00208 1.18693 0.93238 0.87685 0.97644 1.84683 1.79529 1.35552 1.30693 1.18667 0.89229 0.90614 0.99683 1.84726 1.48172 1.35474 1.62514 1.21464 1.00380 0.93600 1.00163 1.21217 0.93649 0.98631 0.99121 1.21071 0.97497 0.95820 0.95095 0.93455 0.85880 0.89961 0.93253 0.89504 0.90130 0.74053 0.73798 0.83365 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.22 12.71 21.45 0.27 -49.95 16 2 C 0.04 1.92 5.38 84.65 0.46 2.38 16 3 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.55 -28.94 7.84 25.60 0.20 -28.74 16 8 H 0.06 3.04 6.70 -2.91 -0.02 3.02 16 9 C 0.25 12.68 2.39 43.48 0.10 12.78 16 10 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 11 N -0.66 -30.81 5.88 -499.87 -2.94 -33.75 16 12 C 0.05 1.99 6.61 86.22 0.57 2.56 16 13 C -0.10 -3.22 5.42 29.82 0.16 -3.05 16 14 C -0.11 -4.20 5.78 -19.76 -0.11 -4.32 16 15 C 0.07 2.37 6.68 22.63 0.15 2.53 16 16 O -0.49 -13.40 12.41 -79.37 -0.98 -14.39 16 17 C 0.06 1.98 6.72 22.53 0.15 2.13 16 18 O -0.50 -12.87 13.29 -79.42 -1.06 -13.92 16 19 C -0.14 -4.48 9.98 22.30 0.22 -4.25 16 20 C -0.11 -4.20 8.73 22.34 0.19 -4.01 16 21 C -0.09 -3.93 5.47 -19.84 -0.11 -4.04 16 22 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 23 H 0.32 15.08 8.54 -89.70 -0.77 14.31 16 24 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.05 1.97 8.05 -2.38 -0.02 1.95 16 26 H 0.09 2.56 7.84 -2.39 -0.02 2.54 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.40 7.66 9.06 -74.05 -0.67 6.98 16 29 H 0.40 6.77 9.06 -74.06 -0.67 6.10 16 30 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 31 H 0.13 5.06 7.06 -2.91 -0.02 5.04 16 Total: -1.00 -63.67 263.27 -1.61 -65.28 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -0.92 Total: 28.12 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 1.99 Total: -26.05 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -2.67 Total: -83.70 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -2.04 Total: -28.31 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -63.67 -1.61 -65.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075794256.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.441 kcal (2) G-P(sol) polarization free energy of solvation -63.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds