Wall clock time and date at job start Mon Mar 30 2020 03:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37963 * 120.01808 * 2 1 4 4 C 1.38860 * 120.03197 * 180.25302 * 3 2 1 5 5 O 1.35909 * 119.97385 * 179.76417 * 4 3 2 6 6 C 1.38863 * 120.05814 * 359.78762 * 4 3 2 7 7 C 1.37970 * 120.02743 * 359.97438 * 6 4 3 8 8 C 1.50703 * 120.01658 * 180.02562 * 7 6 4 9 9 C 1.39101 * 119.97160 * 359.97438 * 7 6 4 10 10 N 1.39516 * 120.03224 * 179.97438 * 9 7 6 11 11 C 1.34784 * 119.99843 * 128.59342 * 10 9 7 12 12 O 1.21773 * 120.00127 * 354.97254 * 11 10 9 13 13 C 1.41776 * 119.99876 * 174.97114 * 11 10 9 14 14 H 1.07999 * 119.99434 * 6.64195 * 13 11 10 15 15 C 1.40131 * 119.99844 * 186.64530 * 13 11 10 16 16 N 1.30627 * 119.99971 * 353.28255 * 15 13 11 17 17 Si 1.86801 * 119.99837 * 173.28843 * 15 13 11 18 18 H 1.48497 * 109.47208 * 94.97930 * 17 15 13 19 19 H 1.48500 * 109.47150 * 214.97424 * 17 15 13 20 20 H 1.48502 * 109.47149 * 334.97875 * 17 15 13 21 21 H 1.08997 * 109.47064 * 278.02643 * 1 2 3 22 22 H 1.08999 * 109.47100 * 38.02835 * 1 2 3 23 23 H 1.09007 * 109.47163 * 158.02943 * 1 2 3 24 24 H 1.08002 * 119.97941 * 0.02562 * 3 2 1 25 25 H 0.96699 * 113.99778 * 270.02506 * 5 4 3 26 26 H 1.07994 * 119.99236 * 179.97438 * 6 4 3 27 27 H 1.08999 * 109.46986 * 269.98365 * 8 7 6 28 28 H 1.08998 * 109.46734 * 29.97632 * 8 7 6 29 29 H 1.08992 * 109.47174 * 149.97785 * 8 7 6 30 30 H 0.97000 * 120.00156 * 308.33026 * 10 9 7 31 31 H 0.97001 * 120.00074 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1946 0.0000 4 6 3.5858 1.1949 -0.0053 5 8 4.2645 2.3724 -0.0101 6 6 4.2816 -0.0068 -0.0062 7 6 3.5939 -1.2028 -0.0012 8 6 4.3493 -2.5069 -0.0016 9 6 2.2029 -1.2046 0.0052 10 7 1.5061 -2.4133 0.0097 11 6 0.5430 -2.6325 0.9267 12 8 0.3431 -1.8153 1.8070 13 6 -0.2375 -3.8146 0.8662 14 1 0.0084 -4.5880 0.1537 15 6 -1.3278 -3.9792 1.7309 16 7 -1.5472 -3.1075 2.6787 17 14 -2.4675 -5.4454 1.5282 18 1 -2.0353 -6.5376 2.4368 19 1 -3.8567 -5.0426 1.8643 20 1 -2.4163 -5.9215 0.1225 21 1 -0.3633 0.1435 1.0176 22 1 -0.3633 0.8095 -0.6331 23 1 -0.3634 -0.9531 -0.3845 24 1 1.6572 2.1299 0.0004 25 1 4.4572 2.7116 -0.8949 26 1 5.3616 -0.0053 -0.0107 27 1 4.5272 -2.8234 -1.0293 28 1 5.3036 -2.3740 0.5080 29 1 3.7635 -3.2662 0.5163 30 1 1.7123 -3.0944 -0.6495 31 1 -2.3022 -3.2213 3.2770 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083344143.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:26 Heat of formation + Delta-G solvation = -62.467642 kcal Electronic energy + Delta-G solvation = -16491.470781 eV Core-core repulsion = 13737.756496 eV Total energy + Delta-G solvation = -2753.714285 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.75669 -37.82281 -36.07145 -33.13196 -33.02758 -32.16083 -29.24361 -27.17790 -26.21392 -25.57151 -21.69226 -20.44439 -19.76582 -17.60035 -17.36519 -16.20440 -15.72142 -15.34920 -14.73892 -14.11146 -13.37881 -13.26471 -12.89567 -12.59431 -12.52551 -12.38455 -12.32150 -11.70927 -11.42320 -11.13792 -11.01670 -10.83640 -10.69078 -10.54389 -10.30569 -10.01168 -9.04145 -8.56569 -8.06434 -7.70681 -7.10892 -6.35098 -4.85229 1.79909 1.88270 3.05300 3.13690 3.17166 3.99086 4.09173 4.45060 4.58957 4.77747 5.30679 5.34752 5.63005 5.71299 5.84018 5.94823 6.05085 6.12850 6.27287 6.34569 6.51875 6.63829 6.83982 6.89023 7.06564 7.23974 7.27306 7.32525 7.88995 7.98783 8.08375 8.28398 8.84659 9.35903 10.42917 10.66171 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.042968 B = 0.006954 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.495698 B = 4025.413765 C = 4438.904306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.064 4.064 3 C -0.137 4.137 4 C 0.069 3.931 5 O -0.501 6.501 6 C -0.138 4.138 7 C -0.109 4.109 8 C -0.106 4.106 9 C 0.181 3.819 10 N -0.709 5.709 11 C 0.550 3.450 12 O -0.565 6.565 13 C -0.543 4.543 14 H 0.068 0.932 15 C 0.090 3.910 16 N -0.749 5.749 17 Si 0.909 3.091 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.263 1.263 21 H 0.086 0.914 22 H 0.041 0.959 23 H 0.070 0.930 24 H 0.120 0.880 25 H 0.378 0.622 26 H 0.119 0.881 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.389 0.611 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 2.913 -7.874 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.067 4.067 3 C -0.156 4.156 4 C 0.024 3.976 5 O -0.310 6.310 6 C -0.157 4.157 7 C -0.112 4.112 8 C -0.163 4.163 9 C 0.084 3.916 10 N -0.357 5.357 11 C 0.358 3.642 12 O -0.447 6.447 13 C -0.579 4.579 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.377 5.377 17 Si 0.733 3.267 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.187 1.187 21 H 0.105 0.895 22 H 0.060 0.940 23 H 0.089 0.911 24 H 0.138 0.862 25 H 0.231 0.769 26 H 0.137 0.863 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.223 0.777 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.265 3.435 -6.428 9.611 hybrid contribution -0.351 -0.933 -0.855 1.313 sum 5.914 2.503 -7.282 9.710 Atomic orbital electron populations 1.20791 0.90342 1.01465 1.02889 1.19885 0.96812 0.91320 0.98703 1.21038 0.93068 0.97821 1.03720 1.18274 0.89740 0.84618 1.04974 1.84849 1.76731 1.36753 1.32666 1.20900 0.99292 0.91189 1.04366 1.19747 0.92727 0.95130 1.03611 1.20642 0.99392 0.94741 1.01529 1.17546 0.89454 0.87508 0.97105 1.44102 1.40543 1.14865 1.36174 1.16956 0.78637 0.88299 0.80283 1.90673 1.69111 1.48953 1.35996 1.20012 1.13371 1.03837 1.20698 0.91399 1.25714 0.97459 0.96635 0.93423 1.70017 1.24454 1.31926 1.11305 0.86337 0.79394 0.81441 0.79545 1.19695 1.20250 1.18700 0.89510 0.94008 0.91146 0.86172 0.76873 0.86288 0.91880 0.92096 0.90969 0.77727 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 8.22 36.01 0.30 -1.83 16 2 C -0.06 -1.35 5.48 -104.40 -0.57 -1.92 16 3 C -0.14 -2.54 9.66 -39.45 -0.38 -2.92 16 4 C 0.07 1.18 6.71 -39.12 -0.26 0.92 16 5 O -0.50 -7.35 13.50 -19.45 -0.26 -7.61 16 6 C -0.14 -2.33 9.63 -39.45 -0.38 -2.71 16 7 C -0.11 -1.99 5.90 -104.40 -0.62 -2.61 16 8 C -0.11 -1.61 9.66 36.01 0.35 -1.26 16 9 C 0.18 3.82 5.84 -83.72 -0.49 3.33 16 10 N -0.71 -15.72 3.91 -12.40 -0.05 -15.77 16 11 C 0.55 14.87 5.64 -14.90 -0.08 14.78 16 12 O -0.56 -17.28 11.99 5.12 0.06 -17.22 16 13 C -0.54 -14.56 9.31 -37.52 -0.35 -14.90 16 14 H 0.07 1.66 7.86 -52.49 -0.41 1.25 16 15 C 0.09 2.39 5.49 -17.35 -0.10 2.30 16 16 N -0.75 -21.39 11.76 55.55 0.65 -20.73 16 17 Si 0.91 19.21 29.57 -169.99 -5.03 14.19 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 20 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 21 H 0.09 2.13 7.08 -51.93 -0.37 1.76 16 22 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 23 H 0.07 1.65 6.14 -51.93 -0.32 1.33 16 24 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 25 H 0.38 3.46 9.06 45.56 0.41 3.87 16 26 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 29 H 0.07 1.20 7.45 -51.93 -0.39 0.82 16 30 H 0.39 7.47 8.61 -40.82 -0.35 7.12 16 31 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 LS Contribution 268.56 15.07 4.05 4.05 Total: -1.00 -32.90 268.56 -5.83 -38.73 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -2.67 Total: 11.19 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.59 Total: -6.82 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.60 Total: -36.50 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.20 Total: -24.83 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.90 -5.83 -38.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083344143.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.736 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds