Wall clock time and date at job start Mon Mar 30 2020 03:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37963 * 120.01808 * 2 1 4 4 C 1.38860 * 120.03197 * 180.25302 * 3 2 1 5 5 O 1.35909 * 119.97385 * 179.76417 * 4 3 2 6 6 C 1.38863 * 120.05814 * 359.78762 * 4 3 2 7 7 C 1.37970 * 120.02743 * 359.97438 * 6 4 3 8 8 C 1.50703 * 120.01658 * 180.02562 * 7 6 4 9 9 C 1.39101 * 119.97160 * 359.97438 * 7 6 4 10 10 N 1.39516 * 120.03224 * 179.97438 * 9 7 6 11 11 C 1.34784 * 119.99843 * 128.59342 * 10 9 7 12 12 O 1.21773 * 120.00127 * 354.97254 * 11 10 9 13 13 C 1.41776 * 119.99876 * 174.97114 * 11 10 9 14 14 H 1.07999 * 119.99434 * 6.64195 * 13 11 10 15 15 C 1.40131 * 119.99844 * 186.64530 * 13 11 10 16 16 N 1.30627 * 119.99971 * 353.28255 * 15 13 11 17 17 Si 1.86801 * 119.99837 * 173.28843 * 15 13 11 18 18 H 1.48497 * 109.47208 * 94.97930 * 17 15 13 19 19 H 1.48500 * 109.47150 * 214.97424 * 17 15 13 20 20 H 1.48502 * 109.47149 * 334.97875 * 17 15 13 21 21 H 1.08997 * 109.47064 * 278.02643 * 1 2 3 22 22 H 1.08999 * 109.47100 * 38.02835 * 1 2 3 23 23 H 1.09007 * 109.47163 * 158.02943 * 1 2 3 24 24 H 1.08002 * 119.97941 * 0.02562 * 3 2 1 25 25 H 0.96699 * 113.99778 * 270.02506 * 5 4 3 26 26 H 1.07994 * 119.99236 * 179.97438 * 6 4 3 27 27 H 1.08999 * 109.46986 * 269.98365 * 8 7 6 28 28 H 1.08998 * 109.46734 * 29.97632 * 8 7 6 29 29 H 1.08992 * 109.47174 * 149.97785 * 8 7 6 30 30 H 0.97000 * 120.00156 * 308.33026 * 10 9 7 31 31 H 0.97001 * 120.00074 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1946 0.0000 4 6 3.5858 1.1949 -0.0053 5 8 4.2645 2.3724 -0.0101 6 6 4.2816 -0.0068 -0.0062 7 6 3.5939 -1.2028 -0.0012 8 6 4.3493 -2.5069 -0.0016 9 6 2.2029 -1.2046 0.0052 10 7 1.5061 -2.4133 0.0097 11 6 0.5430 -2.6325 0.9267 12 8 0.3431 -1.8153 1.8070 13 6 -0.2375 -3.8146 0.8662 14 1 0.0084 -4.5880 0.1537 15 6 -1.3278 -3.9792 1.7309 16 7 -1.5472 -3.1075 2.6787 17 14 -2.4675 -5.4454 1.5282 18 1 -2.0353 -6.5376 2.4368 19 1 -3.8567 -5.0426 1.8643 20 1 -2.4163 -5.9215 0.1225 21 1 -0.3633 0.1435 1.0176 22 1 -0.3633 0.8095 -0.6331 23 1 -0.3634 -0.9531 -0.3845 24 1 1.6572 2.1299 0.0004 25 1 4.4572 2.7116 -0.8949 26 1 5.3616 -0.0053 -0.0107 27 1 4.5272 -2.8234 -1.0293 28 1 5.3036 -2.3740 0.5080 29 1 3.7635 -3.2662 0.5163 30 1 1.7123 -3.0944 -0.6495 31 1 -2.3022 -3.2213 3.2770 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083344143.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:26 Heat of formation + Delta-G solvation = -86.730389 kcal Electronic energy + Delta-G solvation = -16492.522892 eV Core-core repulsion = 13737.756496 eV Total energy + Delta-G solvation = -2754.766397 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.29154 -39.43933 -37.62641 -34.94340 -34.59645 -34.04326 -30.76337 -29.01393 -27.63959 -27.25504 -23.32437 -21.93416 -21.46193 -19.47247 -18.63453 -17.83740 -17.58993 -17.01328 -16.08805 -15.82190 -14.96991 -14.76497 -14.60810 -14.31745 -13.94839 -13.86103 -13.79878 -13.23923 -13.18476 -12.78641 -12.63576 -12.50587 -12.39317 -12.09891 -12.00704 -11.36403 -10.95606 -10.32544 -9.80751 -9.50506 -8.73799 -8.34216 -6.94297 0.36401 0.43846 1.39507 1.40593 1.56695 2.22725 2.42431 2.70417 3.10301 3.35541 3.67580 3.93092 3.98273 4.30092 4.53292 4.57152 4.66464 4.78707 4.82537 4.86764 4.94938 5.22080 5.26515 5.40796 5.46576 5.47612 5.69464 5.85657 5.94856 6.22435 6.49695 6.80337 6.96771 7.49245 8.46682 8.66455 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.042968 B = 0.006954 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.495698 B = 4025.413765 C = 4438.904306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.090 4.090 3 C -0.147 4.147 4 C 0.085 3.915 5 O -0.503 6.503 6 C -0.137 4.137 7 C -0.107 4.107 8 C -0.103 4.103 9 C 0.140 3.860 10 N -0.699 5.699 11 C 0.542 3.458 12 O -0.611 6.611 13 C -0.571 4.571 14 H 0.086 0.914 15 C 0.036 3.964 16 N -0.802 5.802 17 Si 0.995 3.005 18 H -0.263 1.263 19 H -0.273 1.273 20 H -0.248 1.248 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.135 0.865 25 H 0.407 0.593 26 H 0.153 0.847 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.401 0.599 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.183 2.568 -9.213 12.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C -0.166 4.166 4 C 0.040 3.960 5 O -0.316 6.316 6 C -0.155 4.155 7 C -0.110 4.110 8 C -0.160 4.160 9 C 0.044 3.956 10 N -0.347 5.347 11 C 0.350 3.650 12 O -0.497 6.497 13 C -0.606 4.606 14 H 0.104 0.896 15 C -0.182 4.182 16 N -0.431 5.431 17 Si 0.814 3.186 18 H -0.187 1.187 19 H -0.198 1.198 20 H -0.172 1.172 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.061 0.939 24 H 0.153 0.847 25 H 0.265 0.735 26 H 0.171 0.829 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.236 0.764 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.863 3.108 -7.830 11.524 hybrid contribution -0.670 -0.667 -0.488 1.064 sum 7.193 2.441 -8.318 11.265 Atomic orbital electron populations 1.20542 0.91674 1.01052 1.00819 1.19981 0.96262 0.92640 1.00386 1.21200 0.94122 0.97420 1.03889 1.18326 0.89262 0.85742 1.02667 1.84777 1.76029 1.35576 1.35197 1.21246 1.00918 0.90299 1.03077 1.20086 0.91618 0.97224 1.02030 1.20691 0.99470 0.92523 1.03316 1.17873 0.90917 0.86860 0.99962 1.43588 1.39733 1.15843 1.35530 1.17202 0.79282 0.88060 0.80412 1.90633 1.70730 1.50259 1.38079 1.20526 1.14115 1.04459 1.21509 0.89622 1.26911 0.98987 0.99892 0.92404 1.70173 1.25579 1.34641 1.12691 0.85044 0.76513 0.76807 0.80217 1.18740 1.19760 1.17160 0.93466 0.90916 0.93872 0.84727 0.73510 0.82943 0.89094 0.89861 0.93110 0.76365 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.81 8.22 71.24 0.59 -3.23 16 2 C -0.09 -3.85 5.48 -19.72 -0.11 -3.95 16 3 C -0.15 -5.30 9.66 22.35 0.22 -5.09 16 4 C 0.09 2.69 6.71 22.57 0.15 2.84 16 5 O -0.50 -12.82 13.50 -92.53 -1.25 -14.07 16 6 C -0.14 -4.16 9.63 22.36 0.22 -3.95 16 7 C -0.11 -3.72 5.90 -19.72 -0.12 -3.83 16 8 C -0.10 -2.89 9.66 71.24 0.69 -2.20 16 9 C 0.14 5.95 5.84 38.34 0.22 6.18 16 10 N -0.70 -31.83 3.91 -311.31 -1.22 -33.05 16 11 C 0.54 30.52 5.64 85.11 0.48 31.00 16 12 O -0.61 -39.43 11.99 -4.58 -0.05 -39.48 16 13 C -0.57 -31.30 9.31 23.60 0.22 -31.08 16 14 H 0.09 4.21 7.86 -2.91 -0.02 4.19 16 15 C 0.04 1.94 5.49 85.33 0.47 2.41 16 16 N -0.80 -47.61 11.76 21.85 0.26 -47.35 16 17 Si 0.99 39.65 29.57 68.60 2.03 41.67 16 18 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 20 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 21 H 0.05 2.48 7.08 -2.39 -0.02 2.47 16 22 H 0.07 2.69 8.13 -2.39 -0.02 2.67 16 23 H 0.04 2.13 6.14 -2.38 -0.01 2.11 16 24 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 25 H 0.41 5.66 9.06 -74.06 -0.67 4.99 16 26 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.08 1.95 8.08 -2.39 -0.02 1.93 16 29 H 0.05 1.64 7.45 -2.39 -0.02 1.62 16 30 H 0.40 15.65 8.61 -92.71 -0.80 14.85 16 31 H 0.28 14.85 8.29 -92.71 -0.77 14.08 16 Total: -1.00 -74.55 268.56 2.49 -72.06 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -0.29 Total: 31.13 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 3.02 Total: -10.91 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -0.96 Total: -80.40 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -1.30 Total: -53.56 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.67 kcal Total: -74.55 2.49 -72.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083344143.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.671 kcal (2) G-P(sol) polarization free energy of solvation -74.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds