Wall clock time and date at job start Mon Mar 30 2020 03:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99764 * 2 1 4 4 H 1.48497 * 109.47234 * 270.00140 * 3 2 1 5 5 H 1.48501 * 109.47076 * 30.00447 * 3 2 1 6 6 H 1.48503 * 109.46686 * 150.00020 * 3 2 1 7 7 C 1.37871 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99846 * 0.02562 * 7 2 1 10 10 H 1.08991 * 109.30122 * 55.04406 * 9 7 2 11 11 N 1.46637 * 109.30083 * 295.66152 * 9 7 2 12 12 C 1.47150 * 110.24906 * 187.08675 * 11 9 7 13 13 C 1.52891 * 108.52170 * 71.23586 * 12 11 9 14 14 C 1.50740 * 109.97245 * 309.56738 * 13 12 11 15 15 C 1.38695 * 118.42852 * 196.84961 * 14 13 12 16 16 C 1.38053 * 120.52137 * 180.50380 * 15 14 13 17 17 C 1.38570 * 119.83210 * 359.96627 * 16 15 14 18 18 O 1.35997 * 120.14426 * 179.97438 * 17 16 15 19 19 C 1.38955 * 119.70910 * 359.90066 * 17 16 15 20 20 O 1.35988 * 119.88334 * 180.02562 * 19 17 16 21 21 C 1.37872 * 121.62144 * 17.12016 * 14 13 12 22 22 H 0.97003 * 119.99954 * 359.97438 * 1 2 3 23 23 H 1.00897 * 110.99989 * 310.51082 * 11 9 7 24 24 H 1.08998 * 109.62887 * 190.94218 * 12 11 9 25 25 H 1.09003 * 109.62975 * 311.32937 * 12 11 9 26 26 H 1.09002 * 109.38560 * 189.41225 * 13 12 11 27 27 H 1.09007 * 109.39844 * 69.72303 * 13 12 11 28 28 H 1.08001 * 119.74323 * 0.48445 * 15 14 13 29 29 H 1.07998 * 120.08339 * 179.97438 * 16 15 14 30 30 H 0.96698 * 113.99350 * 269.97689 * 18 17 16 31 31 H 0.96703 * 113.99874 * 84.92833 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.5609 -2.5158 -0.8451 11 7 0.4892 -2.6200 1.2454 12 6 -0.1190 -3.9564 1.3431 13 6 0.9894 -4.9765 1.6045 14 6 2.1031 -4.7943 0.6051 15 6 3.0192 -5.8228 0.4426 16 6 4.0622 -5.6977 -0.4532 17 6 4.1961 -4.5365 -1.1974 18 8 5.2214 -4.4062 -2.0813 19 6 3.2774 -3.5063 -1.0376 20 8 3.4052 -2.3654 -1.7665 21 6 2.2280 -3.6379 -0.1352 22 1 -0.4850 0.8401 0.0004 23 1 1.0731 -2.4290 2.0458 24 1 -0.8341 -3.9740 2.1655 25 1 -0.6284 -4.1960 0.4097 26 1 0.5829 -5.9838 1.5137 27 1 1.3809 -4.8356 2.6121 28 1 2.9162 -6.7286 1.0216 29 1 4.7718 -6.5028 -0.5738 30 1 6.0216 -4.0188 -1.7010 31 1 3.0047 -2.4132 -2.6454 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083724868.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:53 Heat of formation + Delta-G solvation = -54.529436 kcal Electronic energy + Delta-G solvation = -16948.326508 eV Core-core repulsion = 14194.956450 eV Total energy + Delta-G solvation = -2753.370058 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95349 -37.46079 -36.15399 -34.85716 -32.60803 -30.56914 -29.49423 -27.63292 -25.25845 -22.79768 -22.42883 -21.09803 -19.62916 -17.72092 -17.10334 -16.69821 -15.55957 -15.05360 -14.60959 -14.43254 -13.84564 -13.65202 -13.21584 -13.02542 -12.52087 -12.31126 -12.01496 -11.54098 -11.18921 -11.01292 -10.83728 -10.65977 -10.51569 -10.31225 -9.97671 -9.35219 -8.99597 -8.40500 -7.85240 -7.82356 -7.01645 -5.85300 -3.93083 1.64699 1.84868 3.38500 3.45023 3.49483 3.97161 4.53993 4.60757 4.98683 5.20312 5.26377 5.42736 5.61122 5.73534 5.75650 5.95296 6.01235 6.08934 6.32764 6.40770 6.55331 6.61103 6.73486 6.90499 7.07566 7.27497 7.37642 7.93211 8.03097 8.16682 8.53833 8.56287 8.85522 9.17935 9.71585 11.20504 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.011278 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.171423 B = 2482.220093 C = 3478.425303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.076 3.924 3 Si 0.889 3.111 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.504 4.504 8 H 0.067 0.933 9 C 0.252 3.748 10 H 0.055 0.945 11 N -0.645 5.645 12 C 0.049 3.951 13 C -0.114 4.114 14 C -0.089 4.089 15 C -0.124 4.124 16 C -0.151 4.151 17 C 0.054 3.946 18 O -0.498 6.498 19 C 0.106 3.894 20 O -0.461 6.461 21 C -0.087 4.087 22 H 0.255 0.745 23 H 0.326 0.674 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.383 0.617 31 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.780 -9.442 0.382 10.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.129 4.129 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.085 0.915 9 C 0.145 3.855 10 H 0.072 0.928 11 N -0.272 5.272 12 C -0.081 4.081 13 C -0.153 4.153 14 C -0.090 4.090 15 C -0.142 4.142 16 C -0.170 4.170 17 C 0.009 3.991 18 O -0.307 6.307 19 C 0.059 3.941 20 O -0.269 6.269 21 C -0.090 4.090 22 H 0.065 0.935 23 H 0.144 0.856 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.238 0.762 31 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.903 -9.032 0.227 9.842 hybrid contribution 1.509 0.229 0.067 1.528 sum 5.412 -8.803 0.294 10.338 Atomic orbital electron populations 1.70093 1.05661 1.25772 1.48013 1.24965 0.94606 0.98675 0.94645 0.86677 0.79842 0.83894 0.77880 1.20902 1.21635 1.20179 1.20977 0.92710 0.88637 1.51939 0.91468 1.18190 0.88129 0.89157 0.90072 0.92762 1.61419 1.37994 1.22467 1.05281 1.22098 0.95426 0.89633 1.00970 1.21234 0.95936 1.00994 0.97135 1.19638 0.97204 0.93598 0.98541 1.20847 0.95263 0.98825 0.99279 1.21025 1.00291 0.97813 0.97883 1.18947 0.92307 0.93728 0.94103 1.84755 1.23944 1.85102 1.36883 1.18767 0.94360 0.85335 0.95602 1.85073 1.79859 1.31664 1.30343 1.21675 0.96322 0.96566 0.94444 0.93485 0.85610 0.91934 0.91919 0.91652 0.91328 0.86609 0.86248 0.76236 0.76924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.57 12.96 55.43 0.72 -23.85 16 2 C 0.08 2.09 5.41 -17.82 -0.10 1.99 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.50 -13.45 6.87 -34.44 -0.24 -13.69 16 8 H 0.07 1.86 6.26 -52.49 -0.33 1.54 16 9 C 0.25 6.15 2.20 -70.19 -0.15 6.00 16 10 H 0.05 1.49 8.14 -51.93 -0.42 1.07 16 11 N -0.64 -14.82 6.20 -109.29 -0.68 -15.50 16 12 C 0.05 0.92 6.62 -3.74 -0.02 0.89 16 13 C -0.11 -1.86 5.82 -27.92 -0.16 -2.02 16 14 C -0.09 -1.66 5.77 -104.57 -0.60 -2.26 16 15 C -0.12 -2.01 9.64 -39.48 -0.38 -2.39 16 16 C -0.15 -2.45 9.99 -39.53 -0.39 -2.85 16 17 C 0.05 0.97 6.71 -39.19 -0.26 0.71 16 18 O -0.50 -7.96 13.29 -34.47 -0.46 -8.42 16 19 C 0.11 2.17 6.25 -39.02 -0.24 1.92 16 20 O -0.46 -9.61 10.06 -34.44 -0.35 -9.95 16 21 C -0.09 -1.87 5.48 -104.49 -0.57 -2.44 16 22 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 23 H 0.33 7.49 8.55 -39.29 -0.34 7.16 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.20 8.05 -51.93 -0.42 0.79 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 28 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.38 4.55 9.06 45.56 0.41 4.96 16 31 H 0.38 6.52 9.06 45.56 0.41 6.94 16 LS Contribution 262.09 15.07 3.95 3.95 Total: -1.00 -30.64 262.09 -6.90 -37.54 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -1.93 Total: 13.87 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -3.13 Total: -14.13 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.04 Total: -39.35 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.80 Total: -18.37 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.64 -6.90 -37.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083724868.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.993 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds