Wall clock time and date at job start Mon Mar 30 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00151 * 2 1 4 4 H 1.48498 * 109.46755 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46864 * 299.99968 * 3 2 1 6 6 H 1.48496 * 109.47065 * 60.00332 * 3 2 1 7 7 C 1.37877 * 119.99565 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99820 * 172.87398 * 7 2 1 9 9 C 1.50703 * 120.00365 * 352.86322 * 7 2 1 10 10 C 1.53004 * 115.54411 * 84.72201 * 9 7 2 11 11 N 1.46501 * 109.47137 * 64.46320 * 10 9 7 12 12 C 1.36425 * 124.80829 * 265.21419 * 11 10 9 13 13 C 1.34435 * 109.08377 * 179.70936 * 12 11 10 14 14 C 1.46743 * 106.37698 * 0.43351 * 13 12 11 15 15 C 1.47103 * 127.02723 * 179.83157 * 14 13 12 16 16 O 1.21553 * 120.00060 * 179.68500 * 15 14 13 17 17 O 1.34789 * 120.00058 * 359.68460 * 15 14 13 18 18 C 1.34626 * 124.81123 * 85.20538 * 11 10 9 19 19 C 1.52994 * 117.50052 * 230.39177 * 9 7 2 20 20 C 1.52997 * 117.49992 * 299.05337 * 9 7 2 21 21 H 0.96997 * 119.99527 * 5.01478 * 1 2 3 22 22 H 1.08994 * 109.47438 * 304.46033 * 10 9 7 23 23 H 1.09004 * 109.46632 * 184.45772 * 10 9 7 24 24 H 1.08003 * 125.45713 * 359.97438 * 12 11 10 25 25 H 1.08001 * 126.81502 * 180.28267 * 13 12 11 26 26 H 0.96700 * 117.00252 * 180.02562 * 17 15 14 27 27 H 1.08000 * 125.89666 * 0.04362 * 18 11 10 28 28 H 1.09003 * 117.49963 * 215.00114 * 19 9 7 29 29 H 1.09002 * 117.50347 * 0.02753 * 19 9 7 30 30 H 1.08992 * 117.50078 * 359.97438 * 20 9 7 31 31 H 1.09007 * 117.49735 * 144.96880 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0782 -1.1977 -0.1166 9 6 1.2597 -2.4942 0.1610 10 6 0.6762 -3.0845 -1.1243 11 7 1.7658 -3.4432 -2.0355 12 6 2.2421 -2.6435 -3.0329 13 6 3.2423 -3.2800 -3.6668 14 6 3.3853 -4.5840 -3.0093 15 6 4.3464 -5.6454 -3.3464 16 8 4.3571 -6.6805 -2.7092 17 8 5.2153 -5.4702 -4.3619 18 6 2.4390 -4.6087 -2.0073 19 6 1.7694 -3.4735 1.2203 20 6 0.4697 -2.6998 1.4550 21 1 -0.4849 0.8368 -0.0734 22 1 0.0307 -2.3476 -1.6022 23 1 0.0953 -3.9750 -0.8841 24 1 1.8773 -1.6555 -3.2719 25 1 3.8235 -2.9067 -4.4971 26 1 5.8274 -6.1958 -4.5461 27 1 2.2669 -5.4229 -1.3188 28 1 1.6890 -4.5383 1.0015 29 1 2.6432 -3.1773 1.8007 30 1 0.4889 -1.8949 2.1897 31 1 -0.4661 -3.2552 1.3906 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085846586.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:24 Heat of formation + Delta-G solvation = -25.055742 kcal Electronic energy + Delta-G solvation = -16252.493272 eV Core-core repulsion = 13500.401289 eV Total energy + Delta-G solvation = -2752.091983 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.67387 -39.20848 -36.66480 -35.58421 -32.17494 -31.57635 -28.65769 -26.59113 -25.42439 -23.08807 -21.31479 -20.14430 -19.51193 -19.08665 -17.46112 -17.06296 -16.07780 -15.16991 -14.89115 -14.70762 -14.32243 -13.66500 -13.44074 -12.90007 -12.60265 -12.40950 -11.76907 -11.58571 -11.48201 -11.19477 -11.11442 -10.99239 -10.60676 -10.39590 -10.17781 -9.87284 -9.04363 -8.69538 -8.40539 -8.00422 -7.77698 -6.23152 -4.29236 1.97753 3.04435 3.17520 3.27416 3.32234 3.34026 3.80817 3.91554 4.26460 5.05343 5.12885 5.42490 5.56808 5.64987 5.84184 5.87953 6.06646 6.12793 6.30435 6.48253 6.52203 6.58119 6.61083 6.85807 6.87733 7.13733 7.25600 7.29999 7.71223 7.73146 7.87923 8.21721 8.40528 8.74260 9.37976 10.85026 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.029014 B = 0.007460 C = 0.006578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.809967 B = 3752.629323 C = 4255.423215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.491 4.491 8 H 0.062 0.938 9 C 0.023 3.977 10 C 0.134 3.866 11 N -0.399 5.399 12 C 0.014 3.986 13 C -0.170 4.170 14 C -0.253 4.253 15 C 0.562 3.438 16 O -0.546 6.546 17 O -0.517 6.517 18 C 0.092 3.908 19 C -0.206 4.206 20 C -0.148 4.148 21 H 0.262 0.738 22 H 0.101 0.899 23 H 0.063 0.937 24 H 0.164 0.836 25 H 0.141 0.859 26 H 0.403 0.597 27 H 0.167 0.833 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 -5.543 -5.264 8.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.529 4.529 8 H 0.080 0.920 9 C 0.022 3.978 10 C 0.013 3.987 11 N -0.068 5.068 12 C -0.114 4.114 13 C -0.193 4.193 14 C -0.262 4.262 15 C 0.410 3.590 16 O -0.439 6.439 17 O -0.327 6.327 18 C -0.048 4.048 19 C -0.244 4.244 20 C -0.186 4.186 21 H 0.072 0.928 22 H 0.119 0.881 23 H 0.081 0.919 24 H 0.182 0.818 25 H 0.159 0.841 26 H 0.259 0.741 27 H 0.184 0.816 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.862 -5.199 -4.745 7.281 hybrid contribution 0.823 0.531 0.003 0.979 sum 2.685 -4.668 -4.741 7.175 Atomic orbital electron populations 1.69959 1.05896 1.27054 1.48817 1.24975 0.94820 0.99020 0.94228 0.86555 0.80463 0.83484 0.77757 1.19556 1.20868 1.20873 1.20402 0.93279 0.88263 1.50939 0.92016 1.19135 0.98736 0.94568 0.85372 1.21846 0.86177 0.99188 0.91498 1.43912 1.26985 1.11812 1.24127 1.21759 0.99565 0.97727 0.92371 1.21852 1.00757 0.93697 1.02964 1.19306 1.04275 0.96621 1.05955 1.20005 0.77988 0.85173 0.75853 1.90836 1.71297 1.29594 1.52146 1.84630 1.47341 1.49448 1.51262 1.21863 0.93876 0.90528 0.98576 1.23027 0.98520 0.95540 1.07266 1.22557 0.92496 1.01213 1.02323 0.92790 0.88073 0.91891 0.81836 0.84081 0.74091 0.81554 0.91563 0.90123 0.89653 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.76 12.97 55.43 0.72 -22.04 16 2 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 3 Si 0.89 20.03 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.49 -12.34 8.58 -34.44 -0.30 -12.63 16 8 H 0.06 1.64 7.82 -52.49 -0.41 1.22 16 9 C 0.02 0.50 1.55 -155.66 -0.24 0.26 16 10 C 0.13 2.62 5.83 -4.04 -0.02 2.60 16 11 N -0.40 -7.52 2.58 -116.83 -0.30 -7.83 16 12 C 0.01 0.26 11.16 -16.85 -0.19 0.07 16 13 C -0.17 -2.96 11.00 -37.49 -0.41 -3.38 16 14 C -0.25 -4.61 6.33 -103.01 -0.65 -5.26 16 15 C 0.56 9.71 8.32 34.33 0.29 10.00 16 16 O -0.55 -10.55 17.71 -19.31 -0.34 -10.89 16 17 O -0.52 -7.09 13.33 -40.73 -0.54 -7.63 16 18 C 0.09 1.68 11.19 -16.47 -0.18 1.49 16 19 C -0.21 -4.19 9.96 -26.70 -0.27 -4.45 16 20 C -0.15 -3.15 9.48 -26.70 -0.25 -3.40 16 21 H 0.26 6.53 8.32 -40.82 -0.34 6.19 16 22 H 0.10 2.11 8.11 -51.93 -0.42 1.69 16 23 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 24 H 0.16 2.87 8.06 -52.48 -0.42 2.44 16 25 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 26 H 0.40 3.43 9.11 45.56 0.42 3.84 16 27 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 30 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 31 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 LS Contribution 284.46 15.07 4.29 4.29 Total: -1.00 -28.65 284.46 -6.46 -35.11 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -2.93 Total: 6.94 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -2.33 Total: -12.95 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.42 Total: -29.87 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.88 Total: -18.52 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.65 -6.46 -35.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085846586.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.055 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds