Wall clock time and date at job start Mon Mar 30 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00151 * 2 1 4 4 H 1.48498 * 109.46755 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46864 * 299.99968 * 3 2 1 6 6 H 1.48496 * 109.47065 * 60.00332 * 3 2 1 7 7 C 1.37877 * 119.99565 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99820 * 172.87398 * 7 2 1 9 9 C 1.50703 * 120.00365 * 352.86322 * 7 2 1 10 10 C 1.53004 * 115.54411 * 84.72201 * 9 7 2 11 11 N 1.46501 * 109.47137 * 64.46320 * 10 9 7 12 12 C 1.36425 * 124.80829 * 265.21419 * 11 10 9 13 13 C 1.34435 * 109.08377 * 179.70936 * 12 11 10 14 14 C 1.46743 * 106.37698 * 0.43351 * 13 12 11 15 15 C 1.47103 * 127.02723 * 179.83157 * 14 13 12 16 16 O 1.21553 * 120.00060 * 179.68500 * 15 14 13 17 17 O 1.34789 * 120.00058 * 359.68460 * 15 14 13 18 18 C 1.34626 * 124.81123 * 85.20538 * 11 10 9 19 19 C 1.52994 * 117.50052 * 230.39177 * 9 7 2 20 20 C 1.52997 * 117.49992 * 299.05337 * 9 7 2 21 21 H 0.96997 * 119.99527 * 5.01478 * 1 2 3 22 22 H 1.08994 * 109.47438 * 304.46033 * 10 9 7 23 23 H 1.09004 * 109.46632 * 184.45772 * 10 9 7 24 24 H 1.08003 * 125.45713 * 359.97438 * 12 11 10 25 25 H 1.08001 * 126.81502 * 180.28267 * 13 12 11 26 26 H 0.96700 * 117.00252 * 180.02562 * 17 15 14 27 27 H 1.08000 * 125.89666 * 0.04362 * 18 11 10 28 28 H 1.09003 * 117.49963 * 215.00114 * 19 9 7 29 29 H 1.09002 * 117.50347 * 0.02753 * 19 9 7 30 30 H 1.08992 * 117.50078 * 359.97438 * 20 9 7 31 31 H 1.09007 * 117.49735 * 144.96880 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0782 -1.1977 -0.1166 9 6 1.2597 -2.4942 0.1610 10 6 0.6762 -3.0845 -1.1243 11 7 1.7658 -3.4432 -2.0355 12 6 2.2421 -2.6435 -3.0329 13 6 3.2423 -3.2800 -3.6668 14 6 3.3853 -4.5840 -3.0093 15 6 4.3464 -5.6454 -3.3464 16 8 4.3571 -6.6805 -2.7092 17 8 5.2153 -5.4702 -4.3619 18 6 2.4390 -4.6087 -2.0073 19 6 1.7694 -3.4735 1.2203 20 6 0.4697 -2.6998 1.4550 21 1 -0.4849 0.8368 -0.0734 22 1 0.0307 -2.3476 -1.6022 23 1 0.0953 -3.9750 -0.8841 24 1 1.8773 -1.6555 -3.2719 25 1 3.8235 -2.9067 -4.4971 26 1 5.8274 -6.1958 -4.5461 27 1 2.2669 -5.4229 -1.3188 28 1 1.6890 -4.5383 1.0015 29 1 2.6432 -3.1773 1.8007 30 1 0.4889 -1.8949 2.1897 31 1 -0.4661 -3.2552 1.3906 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085846586.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:24 Heat of formation + Delta-G solvation = -40.584548 kcal Electronic energy + Delta-G solvation = -16253.166652 eV Core-core repulsion = 13500.401289 eV Total energy + Delta-G solvation = -2752.765363 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.07715 -40.51390 -38.32916 -36.82982 -34.07774 -33.04707 -30.04775 -28.18856 -27.22370 -24.45090 -22.97315 -21.62067 -21.08718 -20.49337 -18.85446 -18.47919 -17.75172 -16.70605 -16.48066 -16.21795 -15.88118 -15.26462 -14.86228 -14.40502 -14.06277 -13.80580 -13.48398 -13.14253 -12.95830 -12.91862 -12.76036 -12.43829 -12.37323 -12.08872 -11.58712 -11.54556 -10.84940 -10.54328 -10.12003 -9.45745 -9.18178 -8.15887 -6.25390 0.61691 1.36635 1.43162 1.51567 1.63845 2.00017 2.39855 2.44833 2.64550 3.13387 3.46868 4.03680 4.10720 4.20739 4.31819 4.49095 4.51327 4.62140 4.74138 4.91720 4.96593 5.11587 5.21986 5.25984 5.48918 5.59033 5.73348 5.74049 5.89578 6.27641 6.36695 6.48267 6.78473 7.22877 7.43174 8.91477 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.029014 B = 0.007460 C = 0.006578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.809967 B = 3752.629323 C = 4255.423215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.039 3.961 3 Si 0.938 3.062 4 H -0.277 1.277 5 H -0.277 1.277 6 H -0.284 1.284 7 C -0.500 4.500 8 H 0.040 0.960 9 C 0.001 3.999 10 C 0.145 3.855 11 N -0.404 5.404 12 C -0.006 4.006 13 C -0.163 4.163 14 C -0.269 4.269 15 C 0.567 3.433 16 O -0.571 6.571 17 O -0.507 6.507 18 C 0.086 3.914 19 C -0.190 4.190 20 C -0.148 4.148 21 H 0.263 0.737 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.165 0.835 25 H 0.162 0.838 26 H 0.427 0.573 27 H 0.181 0.819 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -6.265 -5.878 9.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.201 1.201 5 H -0.202 1.202 6 H -0.210 1.210 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.000 4.000 10 C 0.024 3.976 11 N -0.074 5.074 12 C -0.133 4.133 13 C -0.185 4.185 14 C -0.277 4.277 15 C 0.416 3.584 16 O -0.465 6.465 17 O -0.320 6.320 18 C -0.053 4.053 19 C -0.227 4.227 20 C -0.186 4.186 21 H 0.072 0.928 22 H 0.102 0.898 23 H 0.107 0.893 24 H 0.182 0.818 25 H 0.179 0.821 26 H 0.287 0.713 27 H 0.198 0.802 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.340 -5.925 -5.383 8.340 hybrid contribution 0.763 0.735 0.161 1.071 sum 3.103 -5.191 -5.222 7.990 Atomic orbital electron populations 1.70012 1.06564 1.27482 1.49666 1.25445 0.95419 1.01101 0.94275 0.85814 0.79098 0.80912 0.77699 1.20142 1.20239 1.21031 1.20482 0.92449 0.90068 1.50768 0.94169 1.19220 0.99609 0.94361 0.86839 1.21606 0.86184 0.99705 0.90149 1.43884 1.27131 1.12188 1.24228 1.21944 1.00337 0.98118 0.92921 1.22110 1.00176 0.93226 1.03005 1.19586 1.04700 0.97248 1.06175 1.19831 0.78079 0.84393 0.76077 1.90827 1.72121 1.30394 1.53205 1.84563 1.47128 1.50669 1.49643 1.22162 0.93744 0.90542 0.98897 1.23016 0.97463 0.96644 1.05590 1.22491 0.93911 1.01023 1.01219 0.92800 0.89781 0.89301 0.81811 0.82078 0.71278 0.80180 0.88838 0.91175 0.92124 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.50 12.97 21.45 0.28 -46.22 16 2 C 0.04 1.97 5.39 84.65 0.46 2.43 16 3 Si 0.94 41.18 29.55 68.60 2.03 43.21 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.50 -25.17 8.58 25.60 0.22 -24.95 16 8 H 0.04 2.15 7.82 -2.91 -0.02 2.13 16 9 C 0.00 0.02 1.55 -52.93 -0.08 -0.06 16 10 C 0.14 5.51 5.83 86.38 0.50 6.01 16 11 N -0.40 -14.78 2.58 -523.55 -1.35 -16.13 16 12 C -0.01 -0.20 11.16 83.11 0.93 0.73 16 13 C -0.16 -5.40 11.00 23.62 0.26 -5.14 16 14 C -0.27 -9.31 6.33 -18.82 -0.12 -9.43 16 15 C 0.57 18.43 8.32 70.15 0.58 19.01 16 16 O -0.57 -21.00 17.71 19.66 0.35 -20.66 16 17 O -0.51 -12.50 13.33 -57.01 -0.76 -13.26 16 18 C 0.09 3.00 11.19 84.17 0.94 3.95 16 19 C -0.19 -7.42 9.96 30.62 0.30 -7.11 16 20 C -0.15 -6.17 9.48 30.62 0.29 -5.88 16 21 H 0.26 13.07 8.32 -92.71 -0.77 12.30 16 22 H 0.08 3.48 8.11 -2.39 -0.02 3.46 16 23 H 0.09 2.89 8.10 -2.39 -0.02 2.87 16 24 H 0.16 5.73 8.06 -2.91 -0.02 5.70 16 25 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 26 H 0.43 5.95 9.11 -74.06 -0.67 5.27 16 27 H 0.18 5.62 8.06 -2.91 -0.02 5.59 16 28 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.07 2.86 8.14 -2.39 -0.02 2.85 16 30 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 Total: -1.00 -59.46 284.46 5.29 -54.17 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.47 Total: 19.36 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 4.29 Total: -20.46 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -1.07 Total: -62.36 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.41 Total: -33.91 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -59.46 5.29 -54.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085846586.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.581 kcal (2) G-P(sol) polarization free energy of solvation -59.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds