Wall clock time and date at job start Mon Mar 30 2020 03:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38310 * 119.96471 * 2 1 4 4 C 1.38255 * 120.14472 * 180.02562 * 3 2 1 5 5 C 1.38132 * 120.06651 * 0.25712 * 4 3 2 6 6 C 1.38850 * 119.92980 * 359.51524 * 5 4 3 7 7 N 1.39933 * 120.07188 * 180.23431 * 6 5 4 8 8 C 1.34773 * 119.99893 * 213.53819 * 7 6 5 9 9 O 1.21286 * 120.00143 * 5.26726 * 8 7 6 10 10 C 1.50697 * 119.99910 * 185.27216 * 8 7 6 11 11 O 1.42903 * 109.47021 * 179.97438 * 10 8 7 12 12 C 1.34934 * 117.00050 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99434 * 0.02562 * 12 11 10 14 14 C 1.38633 * 119.99937 * 180.02562 * 12 11 10 15 15 N 1.31583 * 119.99658 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00149 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47282 * 90.00222 * 16 14 12 18 18 H 1.48505 * 109.47010 * 209.99910 * 16 14 12 19 19 H 1.48502 * 109.47086 * 330.00067 * 16 14 12 20 20 C 1.38087 * 119.96845 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47570 * 89.99625 * 1 2 3 22 22 H 1.09002 * 109.47009 * 209.99928 * 1 2 3 23 23 H 1.09003 * 109.47106 * 329.99674 * 1 2 3 24 24 H 1.08003 * 119.92745 * 0.02857 * 3 2 1 25 25 H 1.07997 * 119.96884 * 179.97438 * 4 3 2 26 26 H 1.08005 * 120.03626 * 179.72405 * 5 4 3 27 27 H 0.96994 * 120.00123 * 33.53113 * 7 6 5 28 28 H 1.08997 * 109.47511 * 299.99521 * 10 8 7 29 29 H 1.09001 * 109.47319 * 59.99916 * 10 8 7 30 30 H 0.96998 * 119.99922 * 179.97438 * 15 14 12 31 31 H 1.08000 * 120.02960 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2026 -0.0005 5 6 4.2761 0.0093 -0.0064 6 6 3.5856 -1.1953 -0.0017 7 7 4.2875 -2.4059 -0.0027 8 6 3.7812 -3.4778 -0.6437 9 8 2.7665 -3.3691 -1.2991 10 6 4.4758 -4.8116 -0.5461 11 8 3.7520 -5.7823 -1.3051 12 6 4.2451 -7.0382 -1.3225 13 1 5.1480 -7.2713 -0.7777 14 6 3.5927 -8.0291 -2.0397 15 7 4.0738 -9.2537 -2.0571 16 14 2.0315 -7.6255 -2.9826 17 1 2.3817 -7.2036 -4.3626 18 1 1.1620 -8.8281 -3.0383 19 1 1.3095 -6.5240 -2.2964 20 6 2.1967 -1.1962 -0.0005 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6560 2.1325 0.0005 25 1 4.1168 2.1398 -0.0010 26 1 5.3561 0.0133 -0.0114 27 1 5.1384 -2.4735 0.4579 28 1 5.4884 -4.7237 -0.9396 29 1 4.5173 -5.1242 0.4973 30 1 3.6172 -9.9471 -2.5586 31 1 1.6567 -2.1315 -0.0005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096539301.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:29 Heat of formation + Delta-G solvation = -67.586457 kcal Electronic energy + Delta-G solvation = -15729.942731 eV Core-core repulsion = 12976.006477 eV Total energy + Delta-G solvation = -2753.936253 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.60762 -39.71945 -38.24418 -36.05578 -34.19214 -33.35073 -31.35364 -29.07981 -27.84856 -26.09872 -23.81959 -22.38474 -21.56959 -20.03232 -18.54362 -17.90446 -17.51200 -17.11890 -16.87570 -16.03999 -15.85737 -15.21199 -14.97105 -14.71039 -14.53673 -14.16488 -14.01348 -13.69984 -13.26913 -13.07760 -12.94417 -12.50666 -12.15574 -12.09031 -11.75760 -11.63584 -11.34853 -10.84789 -10.47106 -9.67076 -9.10819 -8.34056 -6.04954 0.27641 0.44353 1.32356 1.35305 1.47927 1.59140 1.79075 2.40251 2.84737 2.99605 3.47403 3.73990 3.96046 4.01811 4.24714 4.39039 4.39629 4.42417 4.45616 4.62099 4.76272 4.83142 4.93797 5.22517 5.35656 5.39355 5.49748 5.54590 5.69819 6.03486 6.10980 6.36032 7.03239 7.07622 7.70451 8.80533 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.040464 B = 0.005506 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.812098 B = 5084.564926 C = 5639.945417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.140 4.140 4 C -0.094 4.094 5 C -0.151 4.151 6 C 0.132 3.868 7 N -0.657 5.657 8 C 0.517 3.483 9 O -0.550 6.550 10 C 0.060 3.940 11 O -0.340 6.340 12 C -0.362 4.362 13 H 0.071 0.929 14 C 0.000 4.000 15 N -0.942 5.942 16 Si 0.960 3.040 17 H -0.276 1.276 18 H -0.272 1.272 19 H -0.278 1.278 20 C -0.156 4.156 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.092 0.908 24 H 0.150 0.850 25 H 0.161 0.839 26 H 0.153 0.847 27 H 0.430 0.570 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.276 0.724 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 23.227 7.041 24.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.158 4.158 4 C -0.112 4.112 5 C -0.171 4.171 6 C 0.039 3.961 7 N -0.306 5.306 8 C 0.305 3.695 9 O -0.426 6.426 10 C -0.020 4.020 11 O -0.255 6.255 12 C -0.440 4.440 13 H 0.089 0.911 14 C -0.195 4.195 15 N -0.588 5.588 16 Si 0.786 3.214 17 H -0.201 1.201 18 H -0.197 1.197 19 H -0.203 1.203 20 C -0.176 4.176 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.111 0.889 24 H 0.168 0.832 25 H 0.179 0.821 26 H 0.170 0.830 27 H 0.270 0.730 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.225 23.116 6.422 24.022 hybrid contribution 0.071 -0.724 -0.125 0.738 sum -1.154 22.391 6.297 23.289 Atomic orbital electron populations 1.20832 0.89994 1.03464 1.02745 1.20092 0.97284 0.92529 0.98301 1.21370 0.94902 0.97597 1.01928 1.21363 0.94119 0.98291 0.97449 1.21206 1.01258 0.90265 1.04375 1.18017 0.91377 0.85877 1.00863 1.43228 1.25306 1.08325 1.53709 1.20912 0.84599 0.86185 0.77820 1.90690 1.26255 1.85196 1.40422 1.22070 0.95712 0.85910 0.98286 1.85267 1.51650 1.18026 1.70589 1.20417 1.09450 0.83562 1.30604 0.91127 1.24958 1.01580 0.94085 0.98871 1.69747 1.42342 1.01732 1.45017 0.85337 0.79882 0.77215 0.78955 1.20134 1.19728 1.20306 1.21079 0.93615 0.98659 1.04261 0.91070 0.92459 0.88897 0.83186 0.82125 0.82967 0.73037 0.89060 0.89251 0.91440 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 10.01 71.23 0.71 -1.60 16 2 C -0.08 -2.01 5.88 -19.88 -0.12 -2.13 16 3 C -0.14 -2.61 9.70 22.29 0.22 -2.39 16 4 C -0.09 -1.57 10.04 22.25 0.22 -1.35 16 5 C -0.15 -3.00 9.96 22.39 0.22 -2.78 16 6 C 0.13 3.65 6.28 38.15 0.24 3.89 16 7 N -0.66 -17.86 5.34 -303.51 -1.62 -19.48 16 8 C 0.52 19.65 7.65 87.66 0.67 20.32 16 9 O -0.55 -26.44 14.19 15.99 0.23 -26.22 16 10 C 0.06 2.37 6.50 71.24 0.46 2.83 16 11 O -0.34 -18.63 8.14 -62.99 -0.51 -19.14 16 12 C -0.36 -21.57 10.35 67.91 0.70 -20.87 16 13 H 0.07 4.25 8.00 -2.91 -0.02 4.22 16 14 C 0.00 -0.01 5.49 84.82 0.47 0.45 16 15 N -0.94 -58.81 13.96 21.61 0.30 -58.51 16 16 Si 0.96 50.69 28.62 68.60 1.96 52.65 16 17 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 18 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.28 -15.45 7.11 99.48 0.71 -14.74 16 20 C -0.16 -4.89 8.31 22.39 0.19 -4.70 16 21 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.06 1.25 8.08 -2.39 -0.02 1.23 16 23 H 0.09 1.33 8.09 -2.39 -0.02 1.31 16 24 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 25 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 26 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 27 H 0.43 7.76 8.82 -92.71 -0.82 6.94 16 28 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.09 3.11 8.14 -2.39 -0.02 3.10 16 30 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 31 H 0.10 3.81 6.42 -2.91 -0.02 3.79 16 Total: -1.00 -78.75 278.05 4.67 -74.08 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 0.32 Total: 4.93 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 3.99 Total: -8.32 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.32 Total: -77.99 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.29 Total: -45.35 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 1.96 Total: 52.65 kcal Total: -78.75 4.67 -74.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096539301.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.496 kcal (2) G-P(sol) polarization free energy of solvation -78.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds