Wall clock time and date at job start Mon Mar 30 2020 03:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 C 1.52994 * 109.47404 * 174.99684 * 10 9 7 13 13 C 1.50701 * 109.47248 * 184.99754 * 12 10 9 14 14 C 1.38676 * 120.41727 * 90.00334 * 13 12 10 15 15 C 1.38623 * 118.42333 * 179.97438 * 14 13 12 16 16 C 1.38225 * 119.16073 * 0.02562 * 15 14 13 17 17 N 1.31860 * 120.76687 * 359.97438 * 16 15 14 18 18 C 1.31895 * 121.72043 * 359.71092 * 17 16 15 19 19 C 1.50705 * 109.47135 * 295.00216 * 10 9 7 20 20 O 1.20829 * 120.00036 * 359.97438 * 19 10 9 21 21 O 1.34228 * 119.99776 * 180.02562 * 19 10 9 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09001 * 109.47698 * 305.00111 * 12 10 9 26 26 H 1.09009 * 109.47010 * 65.00116 * 12 10 9 27 27 H 1.08007 * 120.78551 * 359.97438 * 14 13 12 28 28 H 1.07997 * 120.42475 * 180.02562 * 15 14 13 29 29 H 1.08001 * 119.61954 * 179.97438 * 16 15 14 30 30 H 1.07994 * 119.61858 * 180.31060 * 18 17 16 31 31 H 0.96705 * 116.99837 * 179.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 6 1.4843 -4.9835 0.1263 13 6 2.4671 -6.1193 0.2498 14 6 2.9138 -6.5288 1.4971 15 6 3.8173 -7.5780 1.5627 16 6 4.2404 -8.1767 0.3908 17 7 3.7943 -7.7609 -0.7783 18 6 2.9299 -6.7698 -0.8781 19 6 3.0280 -3.6538 -1.2872 20 8 2.8125 -2.8050 -2.1197 21 8 3.9639 -4.5898 -1.5096 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 0.8495 -4.9545 1.0119 26 1 0.8661 -5.1326 -0.7591 27 1 2.5659 -6.0417 2.3962 28 1 4.1860 -7.9235 2.5172 29 1 4.9445 -8.9945 0.4332 30 1 2.5832 -6.4600 -1.8529 31 1 4.4398 -4.5438 -2.3502 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106882429.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:04 Heat of formation + Delta-G solvation = -92.228157 kcal Electronic energy + Delta-G solvation = -16343.070619 eV Core-core repulsion = 13588.065821 eV Total energy + Delta-G solvation = -2755.004798 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.51967 -40.59068 -37.12792 -36.47211 -34.74581 -32.99356 -32.04690 -28.79628 -26.10310 -24.74217 -24.31813 -22.80034 -20.95002 -18.86047 -18.58076 -17.92935 -17.68202 -16.80917 -16.56185 -16.40395 -15.80628 -14.75825 -14.64906 -14.51256 -14.06584 -13.80927 -13.76861 -13.25570 -13.08029 -12.77384 -12.62010 -12.34515 -12.29293 -12.22733 -11.50260 -11.31029 -11.16659 -10.54642 -10.50699 -10.23298 -9.66785 -8.17147 -6.22809 0.34460 0.50445 1.36986 1.40794 1.47483 1.48220 2.34566 2.42141 3.03030 3.18189 3.64151 3.87022 4.01291 4.18455 4.23363 4.26008 4.36049 4.43932 4.73239 4.90703 4.97942 4.99595 5.11034 5.34673 5.41549 5.50721 5.63347 5.72897 5.83145 5.95018 6.21375 6.85392 7.18343 7.23820 7.42535 8.94648 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.043267 B = 0.006293 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.989719 B = 4448.037810 C = 4646.363320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.281 1.281 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.518 4.518 8 H 0.045 0.955 9 C 0.040 3.960 10 C -0.057 4.057 11 H 0.104 0.896 12 C -0.061 4.061 13 C -0.136 4.136 14 C -0.077 4.077 15 C -0.172 4.172 16 C 0.080 3.920 17 N -0.512 5.512 18 C 0.121 3.879 19 C 0.483 3.517 20 O -0.535 6.535 21 O -0.506 6.506 22 H 0.262 0.738 23 H 0.025 0.975 24 H -0.004 1.004 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.162 0.838 29 H 0.176 0.824 30 H 0.143 0.857 31 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.223 -15.435 3.707 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.778 3.222 4 H -0.207 1.207 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.556 4.556 8 H 0.063 0.937 9 C 0.003 3.997 10 C -0.076 4.076 11 H 0.122 0.878 12 C -0.099 4.099 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.191 4.191 16 C -0.076 4.076 17 N -0.221 5.221 18 C -0.035 4.035 19 C 0.326 3.674 20 O -0.424 6.424 21 O -0.319 6.319 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.014 0.986 25 H 0.121 0.879 26 H 0.092 0.908 27 H 0.168 0.832 28 H 0.180 0.820 29 H 0.193 0.807 30 H 0.160 0.840 31 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 7.107 -15.518 3.084 17.345 hybrid contribution 0.203 1.754 -0.156 1.773 sum 7.311 -13.764 2.927 15.858 Atomic orbital electron populations 1.70039 1.07298 1.27541 1.52303 1.25743 0.95715 1.02671 0.95285 0.85699 0.78521 0.79280 0.78733 1.20737 1.20512 1.18713 1.21347 0.92584 0.92341 1.49311 0.93676 1.18935 0.93402 0.91003 0.96344 1.21186 0.97041 0.97178 0.92244 0.87850 1.20498 0.95876 0.88889 1.04630 1.20792 0.99925 0.98005 0.95094 1.21801 0.95270 0.95668 0.97591 1.22391 0.98542 0.97102 1.01097 1.23202 0.97812 0.98999 0.87616 1.67671 1.11185 1.13730 1.29510 1.22438 0.92378 0.90586 0.98101 1.23759 0.77560 0.76961 0.89133 1.90731 1.66195 1.37830 1.47609 1.84712 1.49707 1.51897 1.45606 0.92897 0.95681 0.98570 0.87942 0.90807 0.83243 0.82012 0.80673 0.83992 0.72852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.95 45.73 29.54 68.60 2.03 47.75 16 4 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.52 -29.52 7.75 25.60 0.20 -29.32 16 8 H 0.04 2.55 7.61 -2.91 -0.02 2.53 16 9 C 0.04 2.03 4.10 29.85 0.12 2.15 16 10 C -0.06 -2.19 2.27 -11.54 -0.03 -2.21 16 11 H 0.10 3.77 8.14 -2.38 -0.02 3.75 16 12 C -0.06 -1.80 4.85 29.85 0.14 -1.66 16 13 C -0.14 -3.57 4.55 -19.77 -0.09 -3.66 16 14 C -0.08 -1.69 9.86 22.47 0.22 -1.47 16 15 C -0.17 -3.17 10.11 22.36 0.23 -2.94 16 16 C 0.08 1.66 11.18 84.69 0.95 2.60 16 17 N -0.51 -13.44 10.36 -195.84 -2.03 -15.47 16 18 C 0.12 3.27 8.08 84.67 0.68 3.95 16 19 C 0.48 18.88 7.19 71.24 0.51 19.39 16 20 O -0.54 -26.19 15.74 21.95 0.35 -25.84 16 21 O -0.51 -15.02 9.33 -51.40 -0.48 -15.50 16 22 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 23 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.00 -0.23 7.95 -2.39 -0.02 -0.25 16 25 H 0.10 2.72 8.10 -2.39 -0.02 2.70 16 26 H 0.07 2.20 8.09 -2.38 -0.02 2.18 16 27 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.14 3.78 7.60 -2.91 -0.02 3.76 16 31 H 0.41 9.13 9.10 -74.05 -0.67 8.46 16 Total: -1.00 -72.67 272.21 4.02 -68.66 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.47 Total: 9.34 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 3.40 Total: -12.51 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -1.74 Total: -71.90 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.13 Total: -41.34 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -72.67 4.02 -68.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106882429.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.573 kcal (2) G-P(sol) polarization free energy of solvation -72.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds