Wall clock time and date at job start Mon Mar 30 2020 03:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38465 * 120.10806 * 2 1 4 4 O 1.35916 * 119.98041 * 359.97438 * 3 2 1 5 5 C 1.38834 * 120.03933 * 180.02562 * 3 2 1 6 6 C 1.38301 * 120.24697 * 359.97438 * 5 3 2 7 7 C 1.37936 * 120.21701 * 0.02562 * 6 5 3 8 8 C 1.39563 * 120.10256 * 180.02562 * 2 1 3 9 9 C 1.47736 * 120.12649 * 359.70418 * 8 2 1 10 10 O 1.21597 * 119.99597 * 305.73841 * 9 8 2 11 11 N 1.34774 * 120.00168 * 125.73257 * 9 8 2 12 12 C 1.46504 * 119.99787 * 3.77915 * 11 9 8 13 13 C 1.36869 * 119.99994 * 183.77037 * 11 9 8 14 14 H 1.07997 * 119.99945 * 7.80182 * 13 11 9 15 15 C 1.39050 * 119.99790 * 187.79146 * 13 11 9 16 16 N 1.31367 * 119.99964 * 7.90555 * 15 13 11 17 17 Si 1.86802 * 119.99897 * 187.89754 * 15 13 11 18 18 H 1.48506 * 109.46816 * 60.00488 * 17 15 13 19 19 H 1.48502 * 109.47159 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47288 * 300.00668 * 17 15 13 21 21 H 1.09004 * 109.47461 * 274.45669 * 1 2 3 22 22 H 1.09007 * 109.47148 * 34.45413 * 1 2 3 23 23 H 1.09004 * 109.47788 * 154.45511 * 1 2 3 24 24 H 0.96698 * 113.99795 * 90.00365 * 4 3 2 25 25 H 1.08000 * 119.87578 * 180.02562 * 5 3 2 26 26 H 1.08003 * 119.89167 * 179.97438 * 6 5 3 27 27 H 1.08005 * 120.02458 * 180.02562 * 7 6 5 28 28 H 1.09002 * 109.47378 * 354.14767 * 12 11 9 29 29 H 1.08992 * 109.47241 * 114.15008 * 12 11 9 30 30 H 1.08999 * 109.47128 * 234.15000 * 12 11 9 31 31 H 0.96994 * 119.99809 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1978 0.0000 4 8 1.5238 2.3759 -0.0005 5 6 3.5899 1.1962 -0.0005 6 6 4.2851 0.0006 -0.0005 7 6 3.6037 -1.1987 -0.0005 8 6 2.2069 -1.2074 -0.0005 9 6 1.4734 -2.4898 0.0055 10 8 0.6415 -2.7102 0.8645 11 7 1.7262 -3.4152 -0.9411 12 6 2.7858 -3.1848 -1.9263 13 6 0.9932 -4.5704 -0.9819 14 1 0.1329 -4.6870 -0.3395 15 6 1.3561 -5.5937 -1.8506 16 7 2.4855 -5.5195 -2.5175 17 14 0.2379 -7.0740 -2.0689 18 1 -1.0840 -6.6253 -2.5756 19 1 0.8477 -8.0158 -3.0418 20 1 0.0611 -7.7579 -0.7627 21 1 -0.3634 0.0799 1.0246 22 1 -0.3634 0.8474 -0.5814 23 1 -0.3635 -0.9272 -0.4431 24 1 1.3274 2.7171 0.8827 25 1 4.1290 2.1320 -0.0001 26 1 5.3651 0.0060 -0.0014 27 1 4.1498 -2.1305 -0.0001 28 1 3.1847 -2.1780 -1.8021 29 1 3.5836 -3.9125 -1.7788 30 1 2.3772 -3.2922 -2.9311 31 1 2.7388 -6.2336 -3.1232 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125605188.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:13 Heat of formation + Delta-G solvation = -60.285749 kcal Electronic energy + Delta-G solvation = -16561.673624 eV Core-core repulsion = 13808.053953 eV Total energy + Delta-G solvation = -2753.619671 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.37394 -39.78255 -37.37752 -36.80179 -33.71759 -33.54065 -31.15052 -28.30184 -27.93582 -26.55632 -24.20102 -22.67180 -20.98942 -19.30291 -18.89922 -17.72751 -17.15288 -16.86532 -16.48881 -15.95442 -15.66530 -15.49923 -14.71040 -14.21814 -14.17347 -13.82404 -13.69348 -13.22817 -13.08458 -12.86590 -12.83234 -12.62701 -12.38662 -12.17108 -12.11673 -11.59163 -11.11233 -10.44901 -9.94501 -9.69279 -9.48704 -8.31434 -5.98217 0.09527 0.29785 1.36916 1.38297 1.49679 1.94827 2.22089 2.65568 2.94878 3.11214 3.38890 3.85155 3.89350 4.08721 4.15715 4.49978 4.57804 4.67868 4.76208 4.79246 4.86351 5.07678 5.21590 5.37028 5.37826 5.39960 5.45513 5.54370 5.84695 5.99041 6.40799 6.87748 7.07851 7.38126 7.93899 8.60158 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.041546 B = 0.007172 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.794169 B = 3903.073352 C = 4305.500441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.098 4.098 3 C 0.102 3.898 4 O -0.497 6.497 5 C -0.125 4.125 6 C -0.101 4.101 7 C -0.111 4.111 8 C -0.107 4.107 9 C 0.465 3.535 10 O -0.633 6.633 11 N -0.447 5.447 12 C 0.118 3.882 13 C -0.348 4.348 14 H 0.079 0.921 15 C -0.002 4.002 16 N -0.892 5.892 17 Si 0.997 3.003 18 H -0.271 1.271 19 H -0.264 1.264 20 H -0.272 1.272 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.034 0.966 24 H 0.409 0.591 25 H 0.166 0.834 26 H 0.168 0.832 27 H 0.124 0.876 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.862 11.997 1.486 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.099 4.099 3 C 0.057 3.943 4 O -0.310 6.310 5 C -0.144 4.144 6 C -0.119 4.119 7 C -0.130 4.130 8 C -0.110 4.110 9 C 0.255 3.745 10 O -0.523 6.523 11 N -0.163 5.163 12 C -0.024 4.024 13 C -0.476 4.476 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.530 5.530 17 Si 0.819 3.181 18 H -0.196 1.196 19 H -0.189 1.189 20 H -0.198 1.198 21 H 0.091 0.909 22 H 0.104 0.896 23 H 0.053 0.947 24 H 0.267 0.733 25 H 0.183 0.817 26 H 0.185 0.815 27 H 0.142 0.858 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.618 11.676 1.095 12.603 hybrid contribution -0.740 -1.121 0.345 1.387 sum 3.878 10.554 1.440 11.336 Atomic orbital electron populations 1.20548 0.90885 1.01650 1.02499 1.20372 0.97039 0.91934 1.00603 1.18125 0.90496 0.84052 1.01628 1.84740 1.76542 1.34434 1.35295 1.21802 0.92439 1.00127 0.99985 1.21285 1.01642 0.90213 0.98736 1.21446 0.91869 1.00134 0.99519 1.19817 0.94902 0.92362 1.03949 1.18544 0.86656 0.85644 0.83628 1.90545 1.39988 1.81276 1.40454 1.43855 1.31071 1.15835 1.25584 1.21867 0.90546 0.99005 0.91019 1.19765 1.10386 0.93838 1.23598 0.90328 1.26158 0.97880 1.01225 0.95148 1.70167 1.21086 1.34576 1.27211 0.84952 0.77913 0.76747 0.78447 1.19601 1.18861 1.19758 0.90851 0.89566 0.94723 0.73269 0.81693 0.81483 0.85790 0.91758 0.91081 0.94135 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.66 8.97 71.23 0.64 -3.02 16 2 C -0.10 -3.61 5.93 -19.49 -0.12 -3.73 16 3 C 0.10 2.88 6.67 22.47 0.15 3.03 16 4 O -0.50 -11.35 12.62 -92.60 -1.17 -12.52 16 5 C -0.13 -2.91 9.98 22.43 0.22 -2.68 16 6 C -0.10 -2.50 10.02 22.21 0.22 -2.28 16 7 C -0.11 -3.80 7.41 22.55 0.17 -3.63 16 8 C -0.11 -4.51 4.84 -20.10 -0.10 -4.61 16 9 C 0.46 24.84 6.03 86.75 0.52 25.36 16 10 O -0.63 -38.18 15.59 -4.02 -0.06 -38.25 16 11 N -0.45 -24.68 3.02 -662.32 -2.00 -26.68 16 12 C 0.12 5.66 7.97 127.77 1.02 6.68 16 13 C -0.35 -20.56 9.53 84.10 0.80 -19.76 16 14 H 0.08 4.92 7.21 -2.91 -0.02 4.90 16 15 C 0.00 -0.12 5.38 84.96 0.46 0.33 16 16 N -0.89 -47.14 9.66 21.68 0.21 -46.94 16 17 Si 1.00 42.94 29.56 68.60 2.03 44.96 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 22 H 0.09 2.69 7.67 -2.38 -0.02 2.67 16 23 H 0.03 1.53 6.62 -2.38 -0.02 1.51 16 24 H 0.41 5.25 9.06 -74.06 -0.67 4.58 16 25 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 26 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 27 H 0.12 4.30 7.38 -2.91 -0.02 4.28 16 28 H 0.06 2.65 4.62 -2.39 -0.01 2.64 16 29 H 0.07 3.51 6.74 -2.39 -0.02 3.50 16 30 H 0.04 2.03 7.44 -2.39 -0.02 2.01 16 31 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 Total: -1.00 -72.15 263.82 3.49 -68.66 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.49 Total: 15.07 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 3.99 Total: -4.31 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -1.79 Total: -73.62 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -1.23 Total: -50.76 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -72.15 3.49 -68.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125605188.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.372 kcal (2) G-P(sol) polarization free energy of solvation -72.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds