Wall clock time and date at job start Mon Mar 30 2020 03:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99683 * 2 1 4 4 H 1.48503 * 109.46819 * 239.99828 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99975 * 3 2 1 7 7 C 1.38745 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00311 * 180.27153 * 7 2 1 9 9 O 1.34924 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.34313 * 117.00019 * 179.97438 * 9 7 2 11 11 O 1.21216 * 119.99850 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00225 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.47132 * 39.99848 * 12 10 9 14 14 N 1.46900 * 109.47254 * 160.00063 * 12 10 9 15 15 C 1.53002 * 109.47004 * 280.00294 * 12 10 9 16 16 C 1.50700 * 109.47281 * 174.99839 * 15 12 10 17 17 C 1.38235 * 119.99976 * 269.72451 * 16 15 12 18 18 C 1.38230 * 119.99755 * 179.76265 * 17 16 15 19 19 C 1.38234 * 120.00280 * 0.51238 * 18 17 16 20 20 C 1.38235 * 119.99787 * 359.73873 * 19 18 17 21 21 C 1.38229 * 120.00224 * 0.02562 * 20 19 18 22 22 H 0.97005 * 120.00277 * 0.02562 * 1 2 3 23 23 H 1.00899 * 110.99777 * 60.00202 * 14 12 10 24 24 H 1.00901 * 110.99655 * 183.95426 * 14 12 10 25 25 H 1.09003 * 109.47157 * 294.99558 * 15 12 10 26 26 H 1.08994 * 109.47526 * 54.99495 * 15 12 10 27 27 H 1.07997 * 119.99494 * 359.97438 * 17 16 15 28 28 H 1.08002 * 120.00077 * 180.23229 * 18 17 16 29 29 H 1.08001 * 120.00291 * 179.72672 * 19 18 17 30 30 H 1.08001 * 119.99617 * 179.97438 * 20 19 18 31 31 H 1.08001 * 120.00442 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1021 1.6966 1.2124 7 6 2.0082 -1.2015 0.0005 8 1 3.0882 -1.2016 0.0050 9 8 1.3336 -2.3700 0.0005 10 6 2.0652 -3.4965 0.0005 11 8 3.2757 -3.4330 0.0001 12 6 1.3811 -4.8392 0.0000 13 1 0.5150 -4.8054 -0.6609 14 7 2.3187 -5.8662 -0.4736 15 6 0.9258 -5.1802 1.4203 16 6 0.1351 -6.4630 1.4000 17 6 -1.2354 -6.4273 1.2233 18 6 -1.9601 -7.6042 1.1998 19 6 -1.3156 -8.8161 1.3636 20 6 0.0542 -8.8514 1.5455 21 6 0.7796 -7.6749 1.5642 22 1 -0.4851 0.8401 -0.0004 23 1 3.1308 -5.9171 0.1230 24 1 1.8651 -6.7647 -0.5445 25 1 1.7984 -5.3015 2.0623 26 1 0.3010 -4.3743 1.8050 27 1 -1.7395 -5.4802 1.1002 28 1 -3.0304 -7.5767 1.0580 29 1 -1.8824 -9.7354 1.3497 30 1 0.5576 -9.7983 1.6739 31 1 1.8498 -7.7024 1.7067 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149233999.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:30 Heat of formation + Delta-G solvation = -62.034442 kcal Electronic energy + Delta-G solvation = -15915.744158 eV Core-core repulsion = 13162.048658 eV Total energy + Delta-G solvation = -2753.695500 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.63608 -38.80241 -35.87343 -34.52834 -32.10334 -31.37257 -30.88731 -27.89438 -25.62978 -23.76565 -22.54597 -21.07654 -19.59177 -17.74453 -17.19066 -16.65584 -15.35747 -15.21979 -14.94023 -14.52459 -14.44474 -14.06551 -13.59949 -13.44972 -13.06206 -12.94109 -12.23892 -12.07618 -11.56545 -11.36004 -11.10866 -10.99870 -10.88721 -10.44662 -10.33419 -9.78276 -9.01625 -8.97124 -8.86596 -8.54484 -8.27796 -6.38168 -4.05842 1.31436 1.37302 3.15138 3.20552 3.24595 3.51863 3.77065 3.94159 4.45758 4.80204 4.83947 4.96193 5.05386 5.13959 5.21195 5.36517 5.44990 5.50345 5.60095 5.90645 5.97078 6.10526 6.22539 6.42688 6.48382 6.66223 6.68952 6.98519 7.35743 7.45507 7.73153 7.98644 8.75668 9.10886 9.89661 10.79868 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.043958 B = 0.005470 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.813914 B = 5117.547969 C = 5596.229237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.381 4.381 8 H 0.094 0.906 9 O -0.215 6.215 10 C 0.406 3.594 11 O -0.546 6.546 12 C 0.120 3.880 13 H 0.104 0.896 14 N -0.826 5.826 15 C -0.114 4.114 16 C -0.074 4.074 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.129 4.129 20 C -0.119 4.119 21 C -0.123 4.123 22 H 0.269 0.731 23 H 0.347 0.653 24 H 0.343 0.657 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 -14.338 3.592 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.161 4.161 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.458 4.458 8 H 0.112 0.888 9 O -0.122 6.122 10 C 0.251 3.749 11 O -0.442 6.442 12 C 0.007 3.993 13 H 0.122 0.878 14 N -0.358 5.358 15 C -0.153 4.153 16 C -0.074 4.074 17 C -0.130 4.130 18 C -0.135 4.135 19 C -0.147 4.147 20 C -0.137 4.137 21 C -0.141 4.141 22 H 0.079 0.921 23 H 0.162 0.838 24 H 0.157 0.843 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.146 0.854 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.284 -13.686 2.920 14.374 hybrid contribution 0.179 0.299 0.933 0.996 sum -3.105 -13.387 3.853 14.272 Atomic orbital electron populations 1.69981 1.05961 1.27707 1.46750 1.25306 0.95801 0.98780 0.96251 0.85753 0.78632 0.79507 0.79332 1.19480 1.20398 1.19541 1.21158 0.92336 0.79863 1.52413 0.88820 1.83865 1.39321 1.13276 1.75715 1.22889 0.86633 0.86832 0.78574 1.90536 1.15672 1.87818 1.50202 1.20656 0.95259 0.88803 0.94619 0.87843 1.58487 1.09967 1.09029 1.58364 1.21389 1.00423 0.95413 0.98114 1.19903 0.94105 0.94670 0.98756 1.21208 0.93615 0.98802 0.99330 1.21165 0.99906 0.92514 0.99939 1.21121 0.94750 0.97808 1.01009 1.21100 0.94313 0.97948 1.00349 1.21091 0.99778 0.92090 1.01160 0.92089 0.83839 0.84293 0.90541 0.88942 0.85439 0.86087 0.86368 0.86243 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.49 13.67 55.48 0.76 -24.73 16 2 C 0.04 1.21 5.49 -17.53 -0.10 1.11 16 3 Si 0.94 21.54 29.55 -169.99 -5.02 16.51 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.38 -11.42 9.64 30.92 0.30 -11.13 16 8 H 0.09 2.83 6.86 -52.48 -0.36 2.47 16 9 O -0.21 -6.20 9.75 -20.72 -0.20 -6.40 16 10 C 0.41 10.16 7.15 36.00 0.26 10.42 16 11 O -0.55 -14.93 15.49 -19.06 -0.30 -15.22 16 12 C 0.12 2.24 3.31 -68.87 -0.23 2.01 16 13 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 14 N -0.83 -13.57 8.87 -5.66 -0.05 -13.62 16 15 C -0.11 -1.81 4.98 -27.88 -0.14 -1.95 16 16 C -0.07 -1.00 4.72 -104.62 -0.49 -1.49 16 17 C -0.11 -1.44 9.70 -39.59 -0.38 -1.82 16 18 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 19 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 20 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 21 C -0.12 -1.43 8.39 -39.58 -0.33 -1.77 16 22 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.35 5.59 8.58 -39.29 -0.34 5.25 16 24 H 0.34 4.65 7.32 -39.29 -0.29 4.37 16 25 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 26 H 0.09 1.58 8.08 -51.93 -0.42 1.16 16 27 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 277.84 15.07 4.19 4.19 Total: -1.00 -33.27 277.84 -6.43 -39.70 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -3.50 Total: 9.22 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -2.31 Total: -9.66 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.71 Total: -38.35 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.50 Total: -21.62 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.27 -6.43 -39.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149233999.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.331 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds