Wall clock time and date at job start Mon Mar 30 2020 03:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99683 * 2 1 4 4 H 1.48503 * 109.46819 * 239.99828 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99975 * 3 2 1 7 7 C 1.38745 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00311 * 180.27153 * 7 2 1 9 9 O 1.34924 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.34313 * 117.00019 * 179.97438 * 9 7 2 11 11 O 1.21216 * 119.99850 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00225 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.47132 * 39.99848 * 12 10 9 14 14 N 1.46900 * 109.47254 * 160.00063 * 12 10 9 15 15 C 1.53002 * 109.47004 * 280.00294 * 12 10 9 16 16 C 1.50700 * 109.47281 * 174.99839 * 15 12 10 17 17 C 1.38235 * 119.99976 * 269.72451 * 16 15 12 18 18 C 1.38230 * 119.99755 * 179.76265 * 17 16 15 19 19 C 1.38234 * 120.00280 * 0.51238 * 18 17 16 20 20 C 1.38235 * 119.99787 * 359.73873 * 19 18 17 21 21 C 1.38229 * 120.00224 * 0.02562 * 20 19 18 22 22 H 0.97005 * 120.00277 * 0.02562 * 1 2 3 23 23 H 1.00899 * 110.99777 * 60.00202 * 14 12 10 24 24 H 1.00901 * 110.99655 * 183.95426 * 14 12 10 25 25 H 1.09003 * 109.47157 * 294.99558 * 15 12 10 26 26 H 1.08994 * 109.47526 * 54.99495 * 15 12 10 27 27 H 1.07997 * 119.99494 * 359.97438 * 17 16 15 28 28 H 1.08002 * 120.00077 * 180.23229 * 18 17 16 29 29 H 1.08001 * 120.00291 * 179.72672 * 19 18 17 30 30 H 1.08001 * 119.99617 * 179.97438 * 20 19 18 31 31 H 1.08001 * 120.00442 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1021 1.6966 1.2124 7 6 2.0082 -1.2015 0.0005 8 1 3.0882 -1.2016 0.0050 9 8 1.3336 -2.3700 0.0005 10 6 2.0652 -3.4965 0.0005 11 8 3.2757 -3.4330 0.0001 12 6 1.3811 -4.8392 0.0000 13 1 0.5150 -4.8054 -0.6609 14 7 2.3187 -5.8662 -0.4736 15 6 0.9258 -5.1802 1.4203 16 6 0.1351 -6.4630 1.4000 17 6 -1.2354 -6.4273 1.2233 18 6 -1.9601 -7.6042 1.1998 19 6 -1.3156 -8.8161 1.3636 20 6 0.0542 -8.8514 1.5455 21 6 0.7796 -7.6749 1.5642 22 1 -0.4851 0.8401 -0.0004 23 1 3.1308 -5.9171 0.1230 24 1 1.8651 -6.7647 -0.5445 25 1 1.7984 -5.3015 2.0623 26 1 0.3010 -4.3743 1.8050 27 1 -1.7395 -5.4802 1.1002 28 1 -3.0304 -7.5767 1.0580 29 1 -1.8824 -9.7354 1.3497 30 1 0.5576 -9.7983 1.6739 31 1 1.8498 -7.7024 1.7067 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149233999.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:30 Heat of formation + Delta-G solvation = -84.337481 kcal Electronic energy + Delta-G solvation = -15916.711290 eV Core-core repulsion = 13162.048658 eV Total energy + Delta-G solvation = -2754.662632 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.25002 -40.19048 -37.65707 -36.26684 -34.30146 -32.47837 -31.76691 -29.29080 -27.57387 -25.38299 -23.42920 -22.21676 -21.35770 -19.91061 -18.96141 -17.69782 -17.00255 -16.60424 -16.47311 -16.13135 -15.87617 -15.66194 -15.09196 -14.69792 -14.29369 -14.06572 -13.75922 -13.48568 -13.31699 -13.06147 -12.62499 -12.35267 -12.17282 -12.07594 -11.95978 -11.84986 -11.00487 -10.70328 -10.00861 -9.80309 -9.51899 -8.54509 -6.34798 0.39463 0.50015 1.30814 1.33496 1.49497 1.62904 2.08476 2.61960 2.87967 2.97404 3.52941 3.81690 3.91678 3.99376 4.15934 4.18034 4.32149 4.50636 4.63526 4.69172 4.79884 4.84143 5.11660 5.15219 5.17859 5.57725 5.63374 5.69996 5.82068 5.99004 6.12148 6.50199 6.64779 6.90298 7.75702 8.65845 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.043958 B = 0.005470 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.813914 B = 5117.547969 C = 5596.229237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.002 4.002 3 Si 1.017 2.983 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.261 1.261 7 C -0.423 4.423 8 H 0.080 0.920 9 O -0.243 6.243 10 C 0.401 3.599 11 O -0.572 6.572 12 C 0.134 3.866 13 H 0.104 0.896 14 N -0.825 5.825 15 C -0.100 4.100 16 C -0.091 4.091 17 C -0.131 4.131 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.126 4.126 22 H 0.279 0.721 23 H 0.351 0.649 24 H 0.362 0.638 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.650 -15.694 3.807 16.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.203 4.203 3 Si 0.835 3.165 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.185 1.185 7 C -0.499 4.499 8 H 0.098 0.902 9 O -0.151 6.151 10 C 0.248 3.752 11 O -0.469 6.469 12 C 0.020 3.980 13 H 0.122 0.878 14 N -0.361 5.361 15 C -0.140 4.140 16 C -0.091 4.091 17 C -0.149 4.149 18 C -0.140 4.140 19 C -0.142 4.142 20 C -0.135 4.135 21 C -0.144 4.144 22 H 0.088 0.912 23 H 0.165 0.835 24 H 0.179 0.821 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.135 0.865 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.481 -15.085 3.135 15.795 hybrid contribution 0.208 0.568 0.867 1.057 sum -3.273 -14.517 4.002 15.410 Atomic orbital electron populations 1.70067 1.07613 1.29451 1.46781 1.26521 0.96889 1.02263 0.94597 0.84701 0.77633 0.74347 0.79770 1.18719 1.18238 1.18547 1.21379 0.92150 0.81218 1.55171 0.90197 1.83891 1.40279 1.14136 1.76771 1.24198 0.86685 0.88011 0.76292 1.90496 1.17009 1.88415 1.51000 1.20563 0.94825 0.85860 0.96718 0.87768 1.58418 1.09812 1.09507 1.58313 1.21176 1.00473 0.96482 0.95871 1.19669 0.94144 0.93933 1.01340 1.21275 0.93727 0.99419 1.00456 1.21424 1.00937 0.92183 0.99406 1.21529 0.95025 0.98488 0.99132 1.21461 0.94535 0.98503 0.99002 1.21248 1.00541 0.91818 1.00785 0.91160 0.83467 0.82068 0.90335 0.91105 0.86534 0.84202 0.83411 0.83373 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.89 13.67 21.62 0.30 -53.60 16 2 C 0.00 -0.14 5.49 84.87 0.47 0.33 16 3 Si 1.02 44.08 29.55 68.60 2.03 46.11 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.42 -26.30 9.64 67.94 0.66 -25.65 16 8 H 0.08 5.04 6.86 -2.91 -0.02 5.02 16 9 O -0.24 -14.66 9.75 14.80 0.14 -14.52 16 10 C 0.40 20.86 7.15 71.23 0.51 21.37 16 11 O -0.57 -32.26 15.49 20.76 0.32 -31.94 16 12 C 0.13 5.08 3.31 44.17 0.15 5.23 16 13 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 14 N -0.83 -26.62 8.87 -171.81 -1.52 -28.14 16 15 C -0.10 -3.26 4.98 29.85 0.15 -3.11 16 16 C -0.09 -2.38 4.72 -19.86 -0.09 -2.48 16 17 C -0.13 -3.33 9.70 22.27 0.22 -3.11 16 18 C -0.12 -2.45 10.05 22.27 0.22 -2.22 16 19 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 20 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 21 C -0.13 -2.67 8.39 22.27 0.19 -2.48 16 22 H 0.28 15.12 8.31 -92.70 -0.77 14.35 16 23 H 0.35 11.08 8.58 -89.69 -0.77 10.31 16 24 H 0.36 9.27 7.32 -89.69 -0.66 8.62 16 25 H 0.08 2.46 8.09 -2.39 -0.02 2.44 16 26 H 0.07 2.57 8.08 -2.39 -0.02 2.56 16 27 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 28 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -73.64 277.84 3.90 -69.74 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.27 Total: 28.13 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 2.91 Total: -15.78 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -1.23 Total: -81.74 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: 0.47 Total: -46.46 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.64 3.90 -69.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149233999.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.593 kcal (2) G-P(sol) polarization free energy of solvation -73.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds