Wall clock time and date at job start Mon Mar 30 2020 03:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37725 * 120.04465 * 2 1 4 4 C 1.38977 * 120.08447 * 180.25609 * 3 2 1 5 5 O 1.35717 * 119.90830 * 179.76219 * 4 3 2 6 6 C 1.39013 * 120.17846 * 359.48991 * 4 3 2 7 7 C 1.37678 * 120.08849 * 0.23232 * 6 4 3 8 8 C 1.39717 * 120.04538 * 179.72930 * 2 1 3 9 9 C 1.47601 * 120.08731 * 0.02562 * 8 2 1 10 10 O 1.21590 * 120.00015 * 353.71579 * 9 8 2 11 11 N 1.34775 * 119.99925 * 173.71480 * 9 8 2 12 12 C 1.46508 * 119.99875 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.46919 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00345 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99869 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00236 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99954 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47180 * 90.00249 * 17 15 13 19 19 H 1.48500 * 109.47414 * 210.00246 * 17 15 13 20 20 H 1.48504 * 109.47434 * 330.00527 * 17 15 13 21 21 H 1.08999 * 109.46557 * 263.66674 * 1 2 3 22 22 H 1.09000 * 109.47417 * 23.66403 * 1 2 3 23 23 H 1.08997 * 109.47432 * 143.66766 * 1 2 3 24 24 H 1.08000 * 119.95742 * 0.02574 * 3 2 1 25 25 H 0.96691 * 114.00042 * 269.72896 * 5 4 3 26 26 H 1.08002 * 119.95609 * 180.25125 * 6 4 3 27 27 H 1.08005 * 120.04100 * 179.97438 * 7 6 4 28 28 H 0.96996 * 120.00554 * 0.02562 * 11 9 8 29 29 H 1.08996 * 109.47000 * 300.00449 * 12 11 9 30 30 H 1.09004 * 109.46489 * 60.00296 * 12 11 9 31 31 H 0.96999 * 120.00013 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1922 0.0000 4 6 3.5863 1.1932 -0.0054 5 8 4.2622 2.3701 -0.0102 6 6 4.2860 -0.0080 -0.0001 7 6 3.6040 -1.2040 0.0057 8 6 2.2066 -1.2094 0.0057 9 6 1.4715 -2.4894 0.0112 10 8 0.2611 -2.4948 0.1260 11 7 2.1421 -3.6521 -0.1111 12 6 1.4125 -4.9226 -0.1051 13 6 2.3871 -6.0621 -0.2559 14 1 3.4441 -5.8602 -0.3467 15 6 1.9292 -7.3624 -0.2780 16 7 2.7796 -8.3569 -0.4091 17 14 0.1008 -7.7115 -0.1217 18 1 -0.5162 -7.7338 -1.4723 19 1 -0.0974 -9.0287 0.5348 20 1 -0.5379 -6.6495 0.6966 21 1 -0.3632 -0.1134 1.0214 22 1 -0.3634 0.9412 -0.4125 23 1 -0.3634 -0.8278 -0.6088 24 1 1.6566 2.1275 0.0004 25 1 4.4583 2.7073 -0.8950 26 1 5.3660 -0.0031 -0.0002 27 1 4.1484 -2.1368 0.0094 28 1 3.1077 -3.6478 -0.2023 29 1 0.8731 -5.0273 0.8362 30 1 0.7042 -4.9386 -0.9335 31 1 2.4575 -9.2717 -0.4242 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226406533.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:16 Heat of formation + Delta-G solvation = -83.308404 kcal Electronic energy + Delta-G solvation = -15807.859705 eV Core-core repulsion = 13053.241696 eV Total energy + Delta-G solvation = -2754.618008 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.44101 -39.92292 -37.59423 -36.31486 -34.58128 -33.36703 -31.56757 -29.68113 -27.98025 -24.94164 -23.90627 -22.46713 -21.64868 -19.51577 -19.00529 -18.20767 -17.40411 -16.49391 -16.44559 -16.20186 -16.08758 -15.53325 -14.74318 -14.66540 -14.29223 -14.15683 -13.87212 -13.53740 -13.46845 -12.97707 -12.75147 -12.69889 -12.61464 -11.93588 -11.67827 -11.45473 -10.92506 -10.65277 -10.05193 -9.89702 -9.56766 -8.40665 -6.48100 -0.25703 0.29734 1.33036 1.35233 1.47802 1.81191 2.27711 2.39184 2.71471 2.95067 3.18700 3.77179 3.80824 3.88365 4.22185 4.40452 4.58520 4.70685 4.80458 4.82753 4.92323 5.01062 5.15938 5.19251 5.28008 5.31540 5.46001 5.59580 5.74444 6.07546 6.51914 6.78155 6.83427 7.13592 7.32891 8.74052 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.043417 B = 0.005529 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.749973 B = 5062.641682 C = 5680.805328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.019 4.019 3 C -0.159 4.159 4 C 0.142 3.858 5 O -0.502 6.502 6 C -0.160 4.160 7 C -0.065 4.065 8 C -0.168 4.168 9 C 0.541 3.459 10 O -0.579 6.579 11 N -0.701 5.701 12 C 0.232 3.768 13 C -0.549 4.549 14 H 0.059 0.941 15 C 0.028 3.972 16 N -0.931 5.931 17 Si 0.938 3.062 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.260 1.260 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.156 0.844 25 H 0.417 0.583 26 H 0.158 0.842 27 H 0.141 0.859 28 H 0.406 0.594 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 20.349 -1.097 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.020 4.020 3 C -0.177 4.177 4 C 0.097 3.903 5 O -0.317 6.317 6 C -0.178 4.178 7 C -0.083 4.083 8 C -0.171 4.171 9 C 0.330 3.670 10 O -0.462 6.462 11 N -0.351 5.351 12 C 0.109 3.891 13 C -0.587 4.587 14 H 0.077 0.923 15 C -0.173 4.173 16 N -0.569 5.569 17 Si 0.761 3.239 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.184 1.184 21 H 0.087 0.913 22 H 0.103 0.897 23 H 0.090 0.910 24 H 0.174 0.826 25 H 0.278 0.722 26 H 0.176 0.824 27 H 0.159 0.841 28 H 0.243 0.757 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.749 20.055 -0.441 20.074 hybrid contribution -0.098 -0.800 -0.456 0.926 sum 0.651 19.255 -0.897 19.287 Atomic orbital electron populations 1.21014 0.89919 1.03339 1.03059 1.20036 0.97155 0.91207 0.93582 1.21444 0.93758 0.98193 1.04287 1.18711 0.89773 0.85759 0.96030 1.84696 1.76082 1.35105 1.35807 1.21558 1.01913 0.90856 1.03446 1.21386 0.92059 0.99646 0.95258 1.19860 0.94549 0.92406 1.10275 1.18761 0.87113 0.84638 0.76459 1.90659 1.15192 1.87890 1.52438 1.45992 1.11498 1.05637 1.71971 1.19142 0.92664 0.81386 0.95930 1.21274 0.94551 0.90685 1.52144 0.92282 1.25590 1.02465 0.95686 0.93520 1.69979 1.36668 1.00034 1.50247 0.85850 0.80081 0.78328 0.79596 1.18892 1.19796 1.18425 0.91343 0.89659 0.91038 0.82630 0.72197 0.82448 0.84087 0.75745 0.96701 0.96719 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 8.72 71.24 0.62 -2.55 16 2 C -0.02 -0.51 5.91 -19.63 -0.12 -0.62 16 3 C -0.16 -3.33 9.60 22.33 0.21 -3.11 16 4 C 0.14 2.76 6.71 22.63 0.15 2.91 16 5 O -0.50 -7.39 13.49 -90.38 -1.22 -8.61 16 6 C -0.16 -3.22 9.97 22.32 0.22 -2.99 16 7 C -0.06 -1.63 9.51 22.50 0.21 -1.41 16 8 C -0.17 -5.22 5.87 -20.08 -0.12 -5.34 16 9 C 0.54 21.48 7.69 86.71 0.67 22.15 16 10 O -0.58 -26.14 13.33 -4.00 -0.05 -26.19 16 11 N -0.70 -29.19 5.50 -469.93 -2.58 -31.77 16 12 C 0.23 11.54 4.50 85.63 0.38 11.92 16 13 C -0.55 -30.45 9.83 25.60 0.25 -30.20 16 14 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 15 C 0.03 1.58 5.47 84.65 0.46 2.04 16 16 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 17 Si 0.94 44.04 27.47 68.60 1.88 45.92 16 18 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.26 -12.11 6.54 99.48 0.65 -11.46 16 21 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 22 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 23 H 0.07 2.38 5.85 -2.39 -0.01 2.36 16 24 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 25 H 0.42 1.79 9.06 -74.06 -0.67 1.12 16 26 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 27 H 0.14 3.25 6.44 -2.91 -0.02 3.23 16 28 H 0.41 14.87 6.38 -92.71 -0.59 14.28 16 29 H 0.02 0.78 7.20 -2.39 -0.02 0.77 16 30 H 0.01 0.76 7.57 -2.38 -0.02 0.74 16 31 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -69.90 269.24 1.14 -68.76 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -0.14 Total: 14.38 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 2.96 Total: -7.22 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -2.28 Total: -87.04 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.27 Total: -34.81 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -69.90 1.14 -68.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226406533.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.546 kcal (2) G-P(sol) polarization free energy of solvation -69.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds