Wall clock time and date at job start Mon Mar 30 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35935 * 116.99722 * 2 1 4 4 C 1.38034 * 119.90095 * 0.28406 * 3 2 1 5 5 C 1.40631 * 119.72717 * 180.29314 * 4 3 2 6 6 C 1.41285 * 120.23603 * 179.72162 * 5 4 3 7 7 H 1.08004 * 120.00234 * 209.61599 * 6 5 4 8 8 C 1.39924 * 120.00023 * 29.62029 * 6 5 4 9 9 N 1.30851 * 120.00148 * 198.54658 * 8 6 5 10 10 Si 1.86799 * 119.99886 * 18.54674 * 8 6 5 11 11 H 1.48499 * 109.47114 * 269.99571 * 10 8 6 12 12 H 1.48497 * 109.47173 * 30.00076 * 10 8 6 13 13 H 1.48504 * 109.47238 * 149.99871 * 10 8 6 14 14 C 1.41027 * 119.52840 * 359.45072 * 5 4 3 15 15 F 1.35101 * 120.11128 * 180.22792 * 14 5 4 16 16 C 1.37953 * 119.78314 * 0.24962 * 14 5 4 17 17 C 1.50695 * 119.86622 * 179.97438 * 16 14 5 18 18 C 1.47195 * 109.46917 * 85.00125 * 17 16 14 19 19 N 6.25204 * 143.33688 * 40.97614 * 2 1 3 20 20 C 1.38444 * 120.26852 * 0.02562 * 16 14 5 21 21 H 1.08998 * 109.46707 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47009 * 299.99723 * 1 2 3 23 23 H 1.09004 * 109.47335 * 59.99564 * 1 2 3 24 24 H 1.08001 * 120.13185 * 0.02562 * 4 3 2 25 25 H 0.97003 * 119.99831 * 354.89090 * 9 8 6 26 26 H 1.09003 * 109.47405 * 205.00200 * 17 16 14 27 27 H 1.09000 * 109.47355 * 325.00388 * 17 16 14 28 28 H 1.08000 * 119.75717 * 179.97438 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2923 2.3675 0.0059 5 6 1.9344 3.6187 -0.0003 6 6 1.1733 4.8090 -0.0003 7 1 1.5655 5.7007 -0.4667 8 6 -0.0884 4.8326 0.6041 9 7 -0.9388 5.7815 0.3064 10 14 -0.5589 3.5095 1.8359 11 1 -1.1962 2.3735 1.1230 12 1 0.6589 3.0322 2.5390 13 1 -1.5134 4.0711 2.8253 14 6 3.3435 3.6767 -0.0009 15 9 3.9726 4.8723 -0.0022 16 6 4.0774 2.5086 -0.0005 17 6 5.5832 2.5685 -0.0016 18 6 6.0696 2.7099 1.3804 19 7 6.4442 2.8185 2.4480 20 6 3.4363 1.2816 -0.0001 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 0.2137 2.3116 0.0110 25 1 -0.6693 6.5092 -0.2756 26 1 5.9830 1.6519 -0.4355 27 1 5.9124 3.4236 -0.5919 28 1 4.0190 0.3723 -0.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238391975.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:51 Heat of formation + Delta-G solvation = -68.753047 kcal Electronic energy + Delta-G solvation = -16068.936785 eV Core-core repulsion = 13191.489640 eV Total energy + Delta-G solvation = -2877.447146 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.075 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.32981 -40.76309 -38.48304 -37.47570 -35.90419 -33.57058 -31.30071 -28.58673 -28.30901 -26.66738 -22.95380 -22.33876 -20.30777 -18.81748 -18.15882 -17.99972 -17.70629 -16.60247 -16.09545 -15.85817 -15.57162 -15.43775 -15.22313 -14.90540 -14.37604 -14.01080 -13.80324 -13.50502 -13.26584 -13.10089 -12.58790 -12.45531 -12.33567 -12.27630 -11.67614 -11.59071 -11.53860 -10.87239 -9.82307 -9.41618 -8.87178 -6.72471 0.43096 0.62511 1.23017 1.45371 1.65508 1.77402 1.81840 2.05957 2.44257 2.51816 3.06633 3.38379 3.80958 3.91029 4.30378 4.36552 4.40931 4.46841 4.54673 4.68177 4.74535 4.82038 5.11715 5.32609 5.47945 5.51492 5.59303 5.80810 6.12279 6.27979 6.55388 6.59722 6.73481 7.86863 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.011370 C = 0.008534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.582504 B = 2462.023893 C = 3280.042355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.152 3.848 4 C -0.312 4.312 5 C 0.076 3.924 6 C -0.541 4.541 7 H 0.049 0.951 8 C 0.015 3.985 9 N -0.832 5.832 10 Si 1.092 2.908 11 H -0.236 1.236 12 H -0.271 1.271 13 H -0.277 1.277 14 C -0.055 4.055 15 F -0.163 7.163 16 C -0.048 4.048 17 C 0.026 3.974 18 C 0.240 3.760 19 N -0.495 5.495 20 C -0.215 4.215 21 H 0.134 0.866 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.124 0.876 25 H 0.281 0.719 26 H 0.172 0.828 27 H 0.135 0.865 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.855 -11.011 -2.952 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.107 3.893 4 C -0.332 4.332 5 C 0.073 3.927 6 C -0.570 4.570 7 H 0.068 0.932 8 C -0.200 4.200 9 N -0.454 5.454 10 Si 0.912 3.088 11 H -0.160 1.160 12 H -0.196 1.196 13 H -0.204 1.204 14 C -0.075 4.075 15 F -0.142 7.142 16 C -0.050 4.050 17 C -0.013 4.013 18 C -0.076 4.076 19 N -0.173 5.173 20 C -0.235 4.235 21 H 0.152 0.848 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.141 0.859 25 H 0.091 0.909 26 H 0.189 0.811 27 H 0.152 0.848 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.236 -11.411 -0.476 11.870 hybrid contribution 0.602 2.014 -1.542 2.607 sum 3.838 -9.396 -2.018 10.349 Atomic orbital electron populations 1.23393 0.77635 1.05531 1.01461 1.85960 1.22377 1.26592 1.88784 1.18913 0.92758 0.83397 0.94272 1.21171 0.99595 0.91527 1.20882 1.17667 0.90984 0.93649 0.90411 1.20506 1.03715 0.97545 1.35240 0.93240 1.28285 0.91173 1.02516 0.98034 1.70593 1.34969 1.10488 1.29393 0.83464 0.77315 0.73498 0.74551 1.16049 1.19590 1.20377 1.17916 0.90499 0.80250 1.18852 1.91273 1.82110 1.45540 1.95320 1.19059 0.94501 0.90819 1.00644 1.18365 0.89298 1.09407 0.84186 1.29525 0.91614 0.91251 0.95238 1.81179 1.11512 1.11223 1.13382 1.19901 0.90480 0.97203 1.15890 0.84811 0.93460 0.92789 0.85892 0.90852 0.81115 0.84767 0.82379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.38 9.81 113.37 1.11 1.50 15 2 O -0.32 -10.63 10.50 -92.81 -0.97 -11.61 15 3 C 0.15 5.78 6.68 22.45 0.15 5.93 15 4 C -0.31 -13.70 6.29 22.81 0.14 -13.55 15 5 C 0.08 3.79 5.11 -21.26 -0.11 3.68 15 6 C -0.54 -29.87 9.11 23.43 0.21 -29.66 15 7 H 0.05 2.95 7.97 -2.91 -0.02 2.93 15 8 C 0.01 0.79 5.40 85.25 0.46 1.25 15 9 N -0.83 -45.15 13.66 21.82 0.30 -44.85 15 10 Si 1.09 46.93 24.66 68.60 1.69 48.63 15 11 H -0.24 -8.58 5.31 99.48 0.53 -8.05 15 12 H -0.27 -11.94 7.08 99.48 0.70 -11.23 15 13 H -0.28 -11.49 7.11 99.48 0.71 -10.78 15 14 C -0.06 -2.47 7.24 22.89 0.17 -2.30 15 15 F -0.16 -7.59 16.05 44.97 0.72 -6.87 15 16 C -0.05 -1.65 5.08 -19.88 -0.10 -1.76 15 17 C 0.03 0.63 5.60 28.04 0.16 0.79 15 18 C 0.24 7.38 15.42 89.43 1.38 8.76 15 19 N -0.49 -18.13 18.54 20.01 0.37 -17.76 15 20 C -0.22 -7.18 9.61 22.55 0.22 -6.97 15 21 H 0.13 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.05 1.32 6.18 -2.38 -0.01 1.31 15 23 H 0.05 1.46 7.67 -2.38 -0.02 1.44 15 24 H 0.12 5.26 2.87 -2.91 -0.01 5.25 15 25 H 0.28 15.16 8.73 -92.71 -0.81 14.35 15 26 H 0.17 2.29 8.05 -2.39 -0.02 2.27 15 27 H 0.13 2.80 7.78 -2.39 -0.02 2.78 15 28 H 0.16 4.04 8.06 -2.91 -0.02 4.02 15 Total: -1.00 -65.00 253.71 6.88 -58.12 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 0.99 Total: 6.69 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 3.79 Total: -32.34 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: 0.67 Total: -62.61 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.97 Total: -11.61 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 0.72 Total: -6.87 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.69 Total: 48.63 kcal Total: -65.00 6.88 -58.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238391975.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.637 kcal (2) G-P(sol) polarization free energy of solvation -64.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds