Wall clock time and date at job start Mon Mar 30 2020 03:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38386 * 119.84720 * 2 1 4 4 C 1.37929 * 120.14825 * 179.72091 * 3 2 1 5 5 C 1.39648 * 119.84941 * 0.27872 * 4 3 2 6 6 C 1.47718 * 120.14840 * 180.02562 * 5 4 3 7 7 O 1.21470 * 119.99709 * 179.97438 * 6 5 4 8 8 O 1.34709 * 120.00360 * 359.97438 * 6 5 4 9 9 C 1.39609 * 119.70029 * 359.97438 * 5 4 3 10 10 C 1.37975 * 119.84624 * 359.97438 * 9 5 4 11 11 C 1.50701 * 119.92057 * 180.02562 * 10 9 5 12 12 H 1.09001 * 109.46423 * 220.00115 * 11 10 9 13 13 N 1.46903 * 109.47268 * 339.99864 * 11 10 9 14 14 C 1.50700 * 109.46954 * 100.00152 * 11 10 9 15 15 H 1.07998 * 120.00125 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99895 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99650 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99942 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47401 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46441 * 120.00570 * 18 16 14 21 21 H 1.48497 * 109.47243 * 240.00265 * 18 16 14 22 22 H 1.08998 * 109.46778 * 90.00124 * 1 2 3 23 23 H 1.09007 * 109.46887 * 210.00160 * 1 2 3 24 24 H 1.08995 * 109.46889 * 329.99807 * 1 2 3 25 25 H 1.08002 * 119.92821 * 0.02562 * 3 2 1 26 26 H 1.08000 * 120.07459 * 180.29841 * 4 3 2 27 27 H 0.96698 * 117.00286 * 180.02562 * 8 6 5 28 28 H 1.07996 * 120.07764 * 180.02562 * 9 5 4 29 29 H 1.00898 * 110.99826 * 296.04468 * 13 11 10 30 30 H 1.00898 * 110.99723 * 60.00614 * 13 11 10 31 31 H 0.97003 * 119.99148 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5750 1.2076 0.0058 5 6 4.2764 0.0000 0.0058 6 6 5.7536 0.0001 0.0126 7 8 6.3610 -1.0519 0.0130 8 8 6.4272 1.1667 0.0183 9 6 3.5753 -1.2072 0.0005 10 6 2.1956 -1.1999 -0.0042 11 6 1.4370 -2.5021 -0.0094 12 1 0.5762 -2.4183 -0.6728 13 7 2.3167 -3.5794 -0.4823 14 6 0.9661 -2.8147 1.3876 15 1 1.1938 -2.1383 2.1982 16 6 0.2447 -3.9642 1.6308 17 7 -0.0321 -4.7881 0.6438 18 14 -0.3383 -4.3520 3.3626 19 1 0.1002 -3.2746 4.2856 20 1 -1.8205 -4.4428 3.3771 21 1 0.2412 -5.6468 3.8017 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5138 25 1 1.6521 2.1335 0.0004 26 1 4.1113 2.1450 0.0107 27 1 7.3928 1.1161 0.0222 28 1 4.1116 -2.1446 0.0008 29 1 2.5941 -3.4254 -1.4401 30 1 3.1228 -3.6771 0.1166 31 1 -0.5394 -5.5969 0.8151 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238451775.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:22 Heat of formation + Delta-G solvation = -70.865703 kcal Electronic energy + Delta-G solvation = -16274.409940 eV Core-core repulsion = 13520.331488 eV Total energy + Delta-G solvation = -2754.078452 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.20928 -38.76861 -35.95760 -34.69289 -32.45746 -31.76835 -29.31673 -27.21592 -26.16509 -23.37421 -22.79121 -20.64856 -19.94536 -17.72358 -16.95083 -16.49336 -15.45132 -15.07547 -14.86853 -14.61665 -14.02093 -13.84359 -13.22491 -13.13094 -12.79061 -12.32610 -11.74019 -11.66748 -11.52556 -11.35858 -10.98526 -10.92059 -10.77863 -10.51614 -10.35112 -9.78418 -9.35504 -8.51170 -8.44779 -7.98629 -7.14755 -5.92940 -4.08470 1.06260 1.85273 2.83037 3.17612 3.30082 3.39257 3.42590 4.18690 4.46843 5.12457 5.26110 5.32194 5.32893 5.57768 5.79197 5.83545 6.08871 6.14776 6.26261 6.27287 6.49244 6.51187 6.66022 6.80161 6.81234 7.12583 7.37955 7.42054 7.85843 8.02739 8.11431 8.58731 8.95323 9.09681 9.60573 11.11037 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.028329 B = 0.007488 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.164414 B = 3738.555898 C = 4138.474904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.039 4.039 3 C -0.142 4.142 4 C -0.083 4.083 5 C -0.143 4.143 6 C 0.528 3.472 7 O -0.519 6.519 8 O -0.516 6.516 9 C -0.062 4.062 10 C -0.088 4.088 11 C 0.255 3.745 12 H 0.055 0.945 13 N -0.813 5.813 14 C -0.530 4.530 15 H 0.055 0.945 16 C 0.085 3.915 17 N -0.844 5.844 18 Si 0.883 3.117 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.066 0.934 23 H 0.102 0.898 24 H 0.057 0.943 25 H 0.122 0.878 26 H 0.127 0.873 27 H 0.408 0.592 28 H 0.132 0.868 29 H 0.300 0.700 30 H 0.320 0.680 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.596 11.607 -2.216 13.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.039 4.039 3 C -0.160 4.160 4 C -0.102 4.102 5 C -0.145 4.145 6 C 0.373 3.627 7 O -0.409 6.409 8 O -0.328 6.328 9 C -0.081 4.081 10 C -0.091 4.091 11 C 0.145 3.855 12 H 0.073 0.927 13 N -0.339 5.339 14 C -0.569 4.569 15 H 0.073 0.927 16 C -0.122 4.122 17 N -0.478 5.478 18 Si 0.711 3.289 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.084 0.916 23 H 0.121 0.879 24 H 0.075 0.925 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.266 0.734 28 H 0.149 0.851 29 H 0.110 0.890 30 H 0.133 0.867 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.603 10.651 -2.146 11.800 hybrid contribution 1.222 0.530 0.906 1.611 sum 5.825 11.181 -1.240 12.668 Atomic orbital electron populations 1.21005 0.90809 1.04358 1.02151 1.20158 0.96882 0.92238 0.94667 1.21000 0.93722 0.97786 1.03500 1.21171 0.94257 0.96701 0.98036 1.18911 0.87982 0.95376 1.12193 1.21138 0.89152 0.80665 0.71700 1.90868 1.70326 1.32927 1.46771 1.84580 1.26281 1.35707 1.86227 1.21145 0.94160 0.96663 0.96095 1.21742 0.93266 0.99307 0.94767 1.18268 0.90419 0.79588 0.97192 0.92737 1.59140 1.22019 1.49569 1.03199 1.20799 1.36201 1.07579 0.92318 0.92707 1.24945 0.95153 0.95914 0.96213 1.70114 1.36320 1.10956 1.30441 0.86703 0.78360 0.78413 0.85450 1.19848 1.21021 1.20997 0.91562 0.87923 0.92450 0.86022 0.85533 0.73439 0.85065 0.88980 0.86667 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.24 36.01 0.33 -1.77 16 2 C -0.04 -0.70 5.88 -104.53 -0.61 -1.31 16 3 C -0.14 -2.19 9.68 -39.64 -0.38 -2.57 16 4 C -0.08 -1.27 9.62 -39.17 -0.38 -1.65 16 5 C -0.14 -2.48 5.87 -104.99 -0.62 -3.10 16 6 C 0.53 8.50 8.27 34.60 0.29 8.78 16 7 O -0.52 -9.73 17.13 -19.24 -0.33 -10.06 16 8 O -0.52 -6.13 12.68 -40.52 -0.51 -6.65 16 9 C -0.06 -1.21 8.79 -39.17 -0.34 -1.55 16 10 C -0.09 -1.80 5.01 -104.68 -0.52 -2.32 16 11 C 0.26 6.01 2.18 -70.01 -0.15 5.86 16 12 H 0.06 1.38 7.28 -51.93 -0.38 1.01 16 13 N -0.81 -18.83 8.01 -6.65 -0.05 -18.88 16 14 C -0.53 -13.88 7.48 -34.44 -0.26 -14.14 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.09 2.29 5.39 -17.82 -0.10 2.19 16 17 N -0.84 -23.82 12.77 55.43 0.71 -23.11 16 18 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.10 2.01 5.89 -51.92 -0.31 1.70 16 24 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 25 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.13 1.61 7.61 -52.49 -0.40 1.21 16 27 H 0.41 2.84 9.11 45.56 0.42 3.25 16 28 H 0.13 2.62 5.83 -52.49 -0.31 2.31 16 29 H 0.30 6.25 9.06 -39.29 -0.36 5.89 16 30 H 0.32 7.27 7.28 -39.29 -0.29 6.99 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 LS Contribution 271.26 15.07 4.09 4.09 Total: -1.00 -30.64 271.26 -6.29 -36.93 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -2.42 Total: 13.44 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.75 Total: -11.57 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.65 Total: -41.99 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.84 Total: -16.70 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.64 -6.29 -36.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238451775.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.934 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds