Wall clock time and date at job start Mon Mar 30 2020 03:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38386 * 119.84720 * 2 1 4 4 C 1.37929 * 120.14825 * 179.72091 * 3 2 1 5 5 C 1.39648 * 119.84941 * 0.27872 * 4 3 2 6 6 C 1.47718 * 120.14840 * 180.02562 * 5 4 3 7 7 O 1.21470 * 119.99709 * 179.97438 * 6 5 4 8 8 O 1.34709 * 120.00360 * 359.97438 * 6 5 4 9 9 C 1.39609 * 119.70029 * 359.97438 * 5 4 3 10 10 C 1.37975 * 119.84624 * 359.97438 * 9 5 4 11 11 C 1.50701 * 119.92057 * 180.02562 * 10 9 5 12 12 H 1.09001 * 109.46423 * 220.00115 * 11 10 9 13 13 N 1.46903 * 109.47268 * 339.99864 * 11 10 9 14 14 C 1.50700 * 109.46954 * 100.00152 * 11 10 9 15 15 H 1.07998 * 120.00125 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99895 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99650 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99942 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47401 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46441 * 120.00570 * 18 16 14 21 21 H 1.48497 * 109.47243 * 240.00265 * 18 16 14 22 22 H 1.08998 * 109.46778 * 90.00124 * 1 2 3 23 23 H 1.09007 * 109.46887 * 210.00160 * 1 2 3 24 24 H 1.08995 * 109.46889 * 329.99807 * 1 2 3 25 25 H 1.08002 * 119.92821 * 0.02562 * 3 2 1 26 26 H 1.08000 * 120.07459 * 180.29841 * 4 3 2 27 27 H 0.96698 * 117.00286 * 180.02562 * 8 6 5 28 28 H 1.07996 * 120.07764 * 180.02562 * 9 5 4 29 29 H 1.00898 * 110.99826 * 296.04468 * 13 11 10 30 30 H 1.00898 * 110.99723 * 60.00614 * 13 11 10 31 31 H 0.97003 * 119.99148 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5750 1.2076 0.0058 5 6 4.2764 0.0000 0.0058 6 6 5.7536 0.0001 0.0126 7 8 6.3610 -1.0519 0.0130 8 8 6.4272 1.1667 0.0183 9 6 3.5753 -1.2072 0.0005 10 6 2.1956 -1.1999 -0.0042 11 6 1.4370 -2.5021 -0.0094 12 1 0.5762 -2.4183 -0.6728 13 7 2.3167 -3.5794 -0.4823 14 6 0.9661 -2.8147 1.3876 15 1 1.1938 -2.1383 2.1982 16 6 0.2447 -3.9642 1.6308 17 7 -0.0321 -4.7881 0.6438 18 14 -0.3383 -4.3520 3.3626 19 1 0.1002 -3.2746 4.2856 20 1 -1.8205 -4.4428 3.3771 21 1 0.2412 -5.6468 3.8017 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5138 25 1 1.6521 2.1335 0.0004 26 1 4.1113 2.1450 0.0107 27 1 7.3928 1.1161 0.0222 28 1 4.1116 -2.1446 0.0008 29 1 2.5941 -3.4254 -1.4401 30 1 3.1228 -3.6771 0.1166 31 1 -0.5394 -5.5969 0.8151 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238451775.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:22 Heat of formation + Delta-G solvation = -92.662161 kcal Electronic energy + Delta-G solvation = -16275.355106 eV Core-core repulsion = 13520.331488 eV Total energy + Delta-G solvation = -2755.023617 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.46891 -40.11832 -37.10043 -36.41538 -33.83513 -33.70061 -30.82946 -28.54477 -28.10523 -24.97222 -24.14218 -22.09462 -21.33331 -18.94143 -18.51023 -18.24209 -16.68100 -16.62776 -16.49400 -16.16257 -15.76048 -15.23051 -14.59045 -14.55239 -14.19473 -14.08177 -13.37956 -12.98266 -12.92691 -12.78758 -12.70310 -12.53373 -12.40195 -12.13598 -11.71551 -11.48463 -11.28698 -10.56261 -9.79455 -9.48256 -8.95694 -7.98030 -6.18522 -0.25958 0.50459 1.41274 1.44835 1.53300 1.55938 2.05939 2.46262 2.86472 3.25486 3.89319 4.00712 4.07464 4.24686 4.35836 4.45958 4.59216 4.84277 4.87007 4.93831 5.12619 5.27711 5.30085 5.43684 5.54546 5.57950 5.76444 5.81302 6.01350 6.17923 6.65388 6.96538 7.05693 7.22703 7.53201 9.05382 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.028329 B = 0.007488 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.164414 B = 3738.555898 C = 4138.474904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.050 4.050 3 C -0.131 4.131 4 C -0.065 4.065 5 C -0.155 4.155 6 C 0.536 3.464 7 O -0.554 6.554 8 O -0.498 6.498 9 C -0.077 4.077 10 C -0.115 4.115 11 C 0.262 3.738 12 H 0.028 0.972 13 N -0.824 5.824 14 C -0.532 4.532 15 H 0.044 0.956 16 C 0.038 3.962 17 N -0.878 5.878 18 Si 0.943 3.057 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.287 1.287 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.088 0.912 25 H 0.163 0.837 26 H 0.163 0.837 27 H 0.432 0.568 28 H 0.114 0.886 29 H 0.311 0.689 30 H 0.320 0.680 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.147 14.441 -1.758 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.051 4.051 3 C -0.149 4.149 4 C -0.083 4.083 5 C -0.156 4.156 6 C 0.383 3.617 7 O -0.447 6.447 8 O -0.312 6.312 9 C -0.096 4.096 10 C -0.117 4.117 11 C 0.152 3.848 12 H 0.045 0.955 13 N -0.352 5.352 14 C -0.571 4.571 15 H 0.063 0.937 16 C -0.166 4.166 17 N -0.514 5.514 18 Si 0.769 3.231 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.213 1.213 22 H 0.096 0.904 23 H 0.083 0.917 24 H 0.107 0.893 25 H 0.181 0.819 26 H 0.181 0.819 27 H 0.294 0.706 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.174 13.523 -1.686 14.577 hybrid contribution 1.130 -0.210 0.727 1.360 sum 6.304 13.313 -0.960 14.761 Atomic orbital electron populations 1.20950 0.90196 1.03962 1.02783 1.20398 0.97578 0.92496 0.94609 1.21384 0.93962 0.98101 1.01438 1.21588 0.94354 0.97106 0.95288 1.19072 0.89048 0.95346 1.12164 1.20904 0.88834 0.81054 0.70933 1.90864 1.70903 1.34446 1.48483 1.84499 1.28382 1.33106 1.85167 1.21017 0.93866 0.97248 0.97425 1.21364 0.93644 0.98722 0.97992 1.17905 0.90085 0.81600 0.95221 0.95464 1.59017 1.22010 1.50213 1.03937 1.21023 1.35584 1.07101 0.93398 0.93737 1.25622 0.95516 0.95995 0.99460 1.70228 1.37571 1.11441 1.32201 0.85768 0.78082 0.77807 0.81433 1.19546 1.20285 1.21283 0.90449 0.91653 0.89344 0.81943 0.81917 0.70598 0.86809 0.87821 0.86696 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 9.24 71.24 0.66 -3.27 16 2 C -0.05 -1.73 5.88 -19.80 -0.12 -1.85 16 3 C -0.13 -3.52 9.68 22.23 0.22 -3.30 16 4 C -0.07 -1.73 9.62 22.54 0.22 -1.51 16 5 C -0.16 -5.07 5.87 -20.10 -0.12 -5.19 16 6 C 0.54 16.16 8.27 70.33 0.58 16.75 16 7 O -0.55 -20.43 17.13 19.93 0.34 -20.09 16 8 O -0.50 -9.93 12.68 -56.19 -0.71 -10.64 16 9 C -0.08 -3.01 8.79 22.54 0.20 -2.81 16 10 C -0.11 -4.73 5.01 -19.90 -0.10 -4.83 16 11 C 0.26 12.80 2.18 43.42 0.09 12.89 16 12 H 0.03 1.47 7.28 -2.39 -0.02 1.45 16 13 N -0.82 -39.87 8.01 -174.95 -1.40 -41.27 16 14 C -0.53 -28.67 7.48 25.60 0.19 -28.47 16 15 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 16 C 0.04 2.08 5.39 84.65 0.46 2.54 16 17 N -0.88 -51.00 12.77 21.45 0.27 -50.73 16 18 Si 0.94 43.56 29.54 68.60 2.03 45.59 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 23 H 0.06 2.60 5.89 -2.38 -0.01 2.59 16 24 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16 25 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 26 H 0.16 3.16 7.61 -2.91 -0.02 3.13 16 27 H 0.43 4.36 9.11 -74.06 -0.67 3.68 16 28 H 0.11 4.74 5.83 -2.91 -0.02 4.73 16 29 H 0.31 13.56 9.06 -89.70 -0.81 12.75 16 30 H 0.32 15.26 7.28 -89.70 -0.65 14.61 16 31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -67.63 271.26 1.86 -65.77 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.94 Total: 30.42 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 2.28 Total: -19.06 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -1.13 Total: -92.00 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.37 Total: -30.72 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.63 1.86 -65.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238451775.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.888 kcal (2) G-P(sol) polarization free energy of solvation -67.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds