Wall clock time and date at job start Mon Mar 30 2020 03:43:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38386 * 119.84720 * 2 1
4 4 C 1.37929 * 120.14825 * 179.72091 * 3 2 1
5 5 C 1.39648 * 119.84941 * 0.27872 * 4 3 2
6 6 C 1.47718 * 120.14840 * 180.02562 * 5 4 3
7 7 O 1.21470 * 119.99709 * 179.97438 * 6 5 4
8 8 O 1.34709 * 120.00360 * 359.97438 * 6 5 4
9 9 C 1.39609 * 119.70029 * 359.97438 * 5 4 3
10 10 C 1.37975 * 119.84624 * 359.97438 * 9 5 4
11 11 C 1.50701 * 119.92057 * 180.02562 * 10 9 5
12 12 H 1.09001 * 109.46423 * 220.00115 * 11 10 9
13 13 N 1.46903 * 109.47268 * 339.99864 * 11 10 9
14 14 C 1.50700 * 109.46954 * 100.00152 * 11 10 9
15 15 H 1.07998 * 120.00125 * 359.97438 * 14 11 10
16 16 C 1.37879 * 119.99895 * 179.97438 * 14 11 10
17 17 N 1.31518 * 119.99650 * 0.02562 * 16 14 11
18 18 Si 1.86799 * 119.99942 * 179.97438 * 16 14 11
19 19 H 1.48496 * 109.47401 * 0.02562 * 18 16 14
20 20 H 1.48502 * 109.46441 * 120.00570 * 18 16 14
21 21 H 1.48497 * 109.47243 * 240.00265 * 18 16 14
22 22 H 1.08998 * 109.46778 * 90.00124 * 1 2 3
23 23 H 1.09007 * 109.46887 * 210.00160 * 1 2 3
24 24 H 1.08995 * 109.46889 * 329.99807 * 1 2 3
25 25 H 1.08002 * 119.92821 * 0.02562 * 3 2 1
26 26 H 1.08000 * 120.07459 * 180.29841 * 4 3 2
27 27 H 0.96698 * 117.00286 * 180.02562 * 8 6 5
28 28 H 1.07996 * 120.07764 * 180.02562 * 9 5 4
29 29 H 1.00898 * 110.99826 * 296.04468 * 13 11 10
30 30 H 1.00898 * 110.99723 * 60.00614 * 13 11 10
31 31 H 0.97003 * 119.99148 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1958 1.2003 0.0000
4 6 3.5750 1.2076 0.0058
5 6 4.2764 0.0000 0.0058
6 6 5.7536 0.0001 0.0126
7 8 6.3610 -1.0519 0.0130
8 8 6.4272 1.1667 0.0183
9 6 3.5753 -1.2072 0.0005
10 6 2.1956 -1.1999 -0.0042
11 6 1.4370 -2.5021 -0.0094
12 1 0.5762 -2.4183 -0.6728
13 7 2.3167 -3.5794 -0.4823
14 6 0.9661 -2.8147 1.3876
15 1 1.1938 -2.1383 2.1982
16 6 0.2447 -3.9642 1.6308
17 7 -0.0321 -4.7881 0.6438
18 14 -0.3383 -4.3520 3.3626
19 1 0.1002 -3.2746 4.2856
20 1 -1.8205 -4.4428 3.3771
21 1 0.2412 -5.6468 3.8017
22 1 -0.3633 0.0000 -1.0277
23 1 -0.3633 -0.8900 0.5139
24 1 -0.3633 0.8899 0.5138
25 1 1.6521 2.1335 0.0004
26 1 4.1113 2.1450 0.0107
27 1 7.3928 1.1161 0.0222
28 1 4.1116 -2.1446 0.0008
29 1 2.5941 -3.4254 -1.4401
30 1 3.1228 -3.6771 0.1166
31 1 -0.5394 -5.5969 0.8151
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238451775.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:43:22
Heat of formation + Delta-G solvation = -92.662161 kcal
Electronic energy + Delta-G solvation = -16275.355106 eV
Core-core repulsion = 13520.331488 eV
Total energy + Delta-G solvation = -2755.023617 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.100 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.46891 -40.11832 -37.10043 -36.41538 -33.83513 -33.70061 -30.82946 -28.54477
-28.10523 -24.97222 -24.14218 -22.09462 -21.33331 -18.94143 -18.51023 -18.24209
-16.68100 -16.62776 -16.49400 -16.16257 -15.76048 -15.23051 -14.59045 -14.55239
-14.19473 -14.08177 -13.37956 -12.98266 -12.92691 -12.78758 -12.70310 -12.53373
-12.40195 -12.13598 -11.71551 -11.48463 -11.28698 -10.56261 -9.79455 -9.48256
-8.95694 -7.98030 -6.18522 -0.25958 0.50459 1.41274 1.44835 1.53300
1.55938 2.05939 2.46262 2.86472 3.25486 3.89319 4.00712 4.07464
4.24686 4.35836 4.45958 4.59216 4.84277 4.87007 4.93831 5.12619
5.27711 5.30085 5.43684 5.54546 5.57950 5.76444 5.81302 6.01350
6.17923 6.65388 6.96538 7.05693 7.22703 7.53201 9.05382
Molecular weight = 235.10amu
Principal moments of inertia in cm(-1)
A = 0.028329 B = 0.007488 C = 0.006764
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 988.164414 B = 3738.555898 C = 4138.474904
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.050 4.050
3 C -0.131 4.131
4 C -0.065 4.065
5 C -0.155 4.155
6 C 0.536 3.464
7 O -0.554 6.554
8 O -0.498 6.498
9 C -0.077 4.077
10 C -0.115 4.115
11 C 0.262 3.738
12 H 0.028 0.972
13 N -0.824 5.824
14 C -0.532 4.532
15 H 0.044 0.956
16 C 0.038 3.962
17 N -0.878 5.878
18 Si 0.943 3.057
19 H -0.271 1.271
20 H -0.277 1.277
21 H -0.287 1.287
22 H 0.077 0.923
23 H 0.065 0.935
24 H 0.088 0.912
25 H 0.163 0.837
26 H 0.163 0.837
27 H 0.432 0.568
28 H 0.114 0.886
29 H 0.311 0.689
30 H 0.320 0.680
31 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.147 14.441 -1.758 15.793
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.051 4.051
3 C -0.149 4.149
4 C -0.083 4.083
5 C -0.156 4.156
6 C 0.383 3.617
7 O -0.447 6.447
8 O -0.312 6.312
9 C -0.096 4.096
10 C -0.117 4.117
11 C 0.152 3.848
12 H 0.045 0.955
13 N -0.352 5.352
14 C -0.571 4.571
15 H 0.063 0.937
16 C -0.166 4.166
17 N -0.514 5.514
18 Si 0.769 3.231
19 H -0.195 1.195
20 H -0.203 1.203
21 H -0.213 1.213
22 H 0.096 0.904
23 H 0.083 0.917
24 H 0.107 0.893
25 H 0.181 0.819
26 H 0.181 0.819
27 H 0.294 0.706
28 H 0.132 0.868
29 H 0.122 0.878
30 H 0.133 0.867
31 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 5.174 13.523 -1.686 14.577
hybrid contribution 1.130 -0.210 0.727 1.360
sum 6.304 13.313 -0.960 14.761
Atomic orbital electron populations
1.20950 0.90196 1.03962 1.02783 1.20398 0.97578 0.92496 0.94609
1.21384 0.93962 0.98101 1.01438 1.21588 0.94354 0.97106 0.95288
1.19072 0.89048 0.95346 1.12164 1.20904 0.88834 0.81054 0.70933
1.90864 1.70903 1.34446 1.48483 1.84499 1.28382 1.33106 1.85167
1.21017 0.93866 0.97248 0.97425 1.21364 0.93644 0.98722 0.97992
1.17905 0.90085 0.81600 0.95221 0.95464 1.59017 1.22010 1.50213
1.03937 1.21023 1.35584 1.07101 0.93398 0.93737 1.25622 0.95516
0.95995 0.99460 1.70228 1.37571 1.11441 1.32201 0.85768 0.78082
0.77807 0.81433 1.19546 1.20285 1.21283 0.90449 0.91653 0.89344
0.81943 0.81917 0.70598 0.86809 0.87821 0.86696 0.93560
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.93 9.24 71.24 0.66 -3.27 16
2 C -0.05 -1.73 5.88 -19.80 -0.12 -1.85 16
3 C -0.13 -3.52 9.68 22.23 0.22 -3.30 16
4 C -0.07 -1.73 9.62 22.54 0.22 -1.51 16
5 C -0.16 -5.07 5.87 -20.10 -0.12 -5.19 16
6 C 0.54 16.16 8.27 70.33 0.58 16.75 16
7 O -0.55 -20.43 17.13 19.93 0.34 -20.09 16
8 O -0.50 -9.93 12.68 -56.19 -0.71 -10.64 16
9 C -0.08 -3.01 8.79 22.54 0.20 -2.81 16
10 C -0.11 -4.73 5.01 -19.90 -0.10 -4.83 16
11 C 0.26 12.80 2.18 43.42 0.09 12.89 16
12 H 0.03 1.47 7.28 -2.39 -0.02 1.45 16
13 N -0.82 -39.87 8.01 -174.95 -1.40 -41.27 16
14 C -0.53 -28.67 7.48 25.60 0.19 -28.47 16
15 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16
16 C 0.04 2.08 5.39 84.65 0.46 2.54 16
17 N -0.88 -51.00 12.77 21.45 0.27 -50.73 16
18 Si 0.94 43.56 29.54 68.60 2.03 45.59 16
19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16
20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16
21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16
22 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
23 H 0.06 2.60 5.89 -2.38 -0.01 2.59 16
24 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16
25 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16
26 H 0.16 3.16 7.61 -2.91 -0.02 3.13 16
27 H 0.43 4.36 9.11 -74.06 -0.67 3.68 16
28 H 0.11 4.74 5.83 -2.91 -0.02 4.73 16
29 H 0.31 13.56 9.06 -89.70 -0.81 12.75 16
30 H 0.32 15.26 7.28 -89.70 -0.65 14.61 16
31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16
Total: -1.00 -67.63 271.26 1.86 -65.77
By element:
Atomic # 1 Polarization: 31.36 SS G_CDS: -0.94 Total: 30.42 kcal
Atomic # 6 Polarization: -21.34 SS G_CDS: 2.28 Total: -19.06 kcal
Atomic # 7 Polarization: -90.87 SS G_CDS: -1.13 Total: -92.00 kcal
Atomic # 8 Polarization: -30.35 SS G_CDS: -0.37 Total: -30.72 kcal
Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal
Total: -67.63 1.86 -65.77 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238451775.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.888 kcal
(2) G-P(sol) polarization free energy of solvation -67.634 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.523 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.774 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.662 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds