Wall clock time and date at job start Mon Mar 30 2020 03:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38391 * 119.92546 * 2 1 4 4 C 1.38342 * 120.30297 * 179.76707 * 3 2 1 5 5 C 1.37965 * 120.15078 * 0.50781 * 4 3 2 6 6 C 1.50703 * 120.07666 * 179.77054 * 5 4 3 7 7 H 1.09002 * 109.47152 * 219.72236 * 6 5 4 8 8 N 1.46899 * 109.47107 * 339.72149 * 6 5 4 9 9 C 1.50699 * 109.47227 * 99.72353 * 6 5 4 10 10 H 1.07999 * 120.00019 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00129 * 180.02562 * 9 6 5 12 12 N 1.31519 * 119.99723 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99900 * 179.97438 * 11 9 6 14 14 H 1.48491 * 109.47312 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46948 * 119.99892 * 13 11 9 16 16 H 1.48500 * 109.46809 * 239.99811 * 13 11 9 17 17 C 1.39607 * 119.84724 * 359.49514 * 5 4 3 18 18 C 1.47724 * 120.15148 * 180.23200 * 17 5 4 19 19 O 1.21474 * 120.00004 * 359.97438 * 18 17 5 20 20 O 1.34705 * 120.00080 * 179.97438 * 18 17 5 21 21 C 1.37920 * 119.92394 * 180.02562 * 2 1 3 22 22 H 1.08995 * 109.47121 * 269.97817 * 1 2 3 23 23 H 1.08996 * 109.47009 * 29.97932 * 1 2 3 24 24 H 1.09001 * 109.46656 * 149.97981 * 1 2 3 25 25 H 1.07997 * 119.84558 * 0.04058 * 3 2 1 26 26 H 1.08004 * 119.92510 * 180.25296 * 4 3 2 27 27 H 1.00893 * 111.00096 * 296.05175 * 8 6 5 28 28 H 1.00903 * 110.99833 * 59.99796 * 8 6 5 29 29 H 0.97003 * 119.99231 * 179.97438 * 12 11 9 30 30 H 0.96711 * 117.00292 * 179.97438 * 20 18 17 31 31 H 1.07999 * 120.08429 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5808 1.2085 0.0049 5 6 4.2816 0.0201 -0.0008 6 6 5.7886 0.0321 -0.0008 7 1 6.1582 -0.7523 -0.6613 8 7 6.2680 1.3373 -0.4745 9 6 6.2928 -0.2106 1.3985 10 1 5.5921 -0.3583 2.2069 11 6 7.6487 -0.2431 1.6468 12 7 8.5019 -0.0628 0.6623 13 14 8.2736 -0.5433 3.3814 14 1 7.1200 -0.7140 4.3006 15 1 9.1087 -1.7711 3.4011 16 1 9.0890 0.6172 3.8214 17 6 3.5916 -1.1935 -0.0009 18 6 4.3352 -2.4699 -0.0018 19 8 5.5500 -2.4651 -0.0030 20 8 3.6663 -3.6391 -0.0013 21 6 2.1950 -1.1953 -0.0005 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6537 2.1325 0.0007 26 1 4.1134 2.1481 0.0090 27 1 5.9973 1.4956 -1.4335 28 1 5.9385 2.0817 0.1217 29 1 9.4558 -0.0853 0.8371 30 1 4.1962 -4.4481 -0.0023 31 1 1.6552 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238476721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:49 Heat of formation + Delta-G solvation = -57.957711 kcal Electronic energy + Delta-G solvation = -16608.200969 eV Core-core repulsion = 13854.682249 eV Total energy + Delta-G solvation = -2753.518720 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93615 -38.32572 -35.65719 -34.58416 -32.08274 -31.18329 -30.34490 -26.92588 -25.42778 -24.08671 -22.38830 -20.73194 -19.53261 -17.36743 -16.46280 -16.23244 -15.38652 -14.89410 -14.82392 -14.30155 -13.94523 -13.77322 -13.51334 -12.84122 -12.61477 -12.39375 -12.03990 -11.73540 -11.33864 -11.19796 -10.87142 -10.84283 -10.72426 -10.48732 -9.86305 -9.36202 -9.01949 -8.56947 -8.29292 -7.88059 -7.06830 -5.74239 -3.84801 1.28990 1.84487 3.24577 3.39634 3.46709 3.50178 3.64189 4.28385 4.60769 5.08081 5.13805 5.35092 5.45880 5.55185 5.68639 5.77805 5.88973 5.95888 6.03539 6.26955 6.39690 6.47615 6.79741 6.89403 6.96610 7.07770 7.36403 7.68959 7.99504 8.34636 8.63220 8.72037 9.05252 9.24869 9.79316 11.31367 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.009096 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.577984 B = 3077.549194 C = 3532.504354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.135 4.135 3 C -0.086 4.086 4 C -0.144 4.144 5 C -0.016 4.016 6 C 0.242 3.758 7 H 0.084 0.916 8 N -0.812 5.812 9 C -0.504 4.504 10 H 0.046 0.954 11 C 0.087 3.913 12 N -0.846 5.846 13 Si 0.881 3.119 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.123 4.123 18 C 0.500 3.500 19 O -0.450 6.450 20 O -0.531 6.531 21 C -0.067 4.067 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.118 0.882 26 H 0.126 0.874 27 H 0.297 0.703 28 H 0.315 0.685 29 H 0.252 0.748 30 H 0.404 0.596 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.641 -1.141 -2.467 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.135 4.135 3 C -0.104 4.104 4 C -0.162 4.162 5 C -0.019 4.019 6 C 0.133 3.867 7 H 0.101 0.899 8 N -0.338 5.338 9 C -0.543 4.543 10 H 0.064 0.936 11 C -0.119 4.119 12 N -0.481 5.481 13 Si 0.709 3.291 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.125 4.125 18 C 0.342 3.658 19 O -0.334 6.334 20 O -0.344 6.344 21 C -0.085 4.085 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.136 0.864 26 H 0.144 0.856 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.062 0.938 30 H 0.261 0.739 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.554 -1.039 -2.389 12.821 hybrid contribution -0.332 -0.465 0.980 1.135 sum -12.886 -1.504 -1.409 13.049 Atomic orbital electron populations 1.20672 0.91408 1.02194 1.01831 1.19667 0.95787 0.93023 1.04987 1.21166 0.94331 0.97140 0.97759 1.20982 0.93549 0.98306 1.03374 1.22100 1.02000 0.90386 0.87385 1.18730 0.80065 0.89530 0.98417 0.89925 1.59258 1.67363 1.04315 1.02901 1.20508 0.91268 1.51300 0.91216 0.93583 1.24837 0.96904 0.94327 0.95859 1.70112 1.01192 1.46625 1.30153 0.86754 0.78862 0.77652 0.85873 1.20127 1.21171 1.21154 1.18880 0.92678 0.90587 1.10362 1.20992 0.86320 0.83721 0.74817 1.91081 1.13767 1.86754 1.41788 1.84530 1.45545 1.16986 1.87365 1.21229 0.92941 0.97800 0.96526 0.91742 0.91997 0.91937 0.86438 0.85601 0.89226 0.87210 0.93764 0.73869 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.01 36.01 0.36 -0.76 16 2 C -0.13 -1.98 5.87 -104.68 -0.61 -2.60 16 3 C -0.09 -1.31 9.69 -39.49 -0.38 -1.69 16 4 C -0.14 -2.61 9.24 -39.64 -0.37 -2.97 16 5 C -0.02 -0.34 5.05 -104.21 -0.53 -0.86 16 6 C 0.24 6.15 2.13 -70.02 -0.15 6.00 16 7 H 0.08 2.39 5.92 -51.93 -0.31 2.09 16 8 N -0.81 -19.24 8.02 -6.65 -0.05 -19.29 16 9 C -0.50 -14.30 7.42 -34.44 -0.26 -14.56 16 10 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 11 C 0.09 2.52 5.39 -17.82 -0.10 2.43 16 12 N -0.85 -25.57 12.77 55.43 0.71 -24.86 16 13 Si 0.88 22.32 29.54 -169.99 -5.02 17.30 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 C -0.12 -2.47 5.87 -104.98 -0.62 -3.09 16 18 C 0.50 10.22 8.21 34.61 0.28 10.50 16 19 O -0.45 -11.09 13.13 -19.25 -0.25 -11.34 16 20 O -0.53 -8.31 12.68 -40.50 -0.51 -8.82 16 21 C -0.07 -1.10 9.27 -39.17 -0.36 -1.46 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 24 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 25 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 26 H 0.13 2.14 6.24 -52.48 -0.33 1.81 16 27 H 0.30 6.26 9.06 -39.30 -0.36 5.90 16 28 H 0.31 6.98 7.28 -39.29 -0.29 6.70 16 29 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.40 4.50 9.11 45.56 0.42 4.91 16 31 H 0.13 1.83 7.61 -52.49 -0.40 1.43 16 LS Contribution 269.25 15.07 4.06 4.06 Total: -1.00 -33.53 269.25 -6.29 -39.82 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -2.49 Total: 12.20 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -2.73 Total: -9.06 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.65 Total: -44.16 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.77 Total: -20.16 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.53 -6.29 -39.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238476721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.138 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds