Wall clock time and date at job start Mon Mar 30 2020 03:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38391 * 119.92546 * 2 1 4 4 C 1.38342 * 120.30297 * 179.76707 * 3 2 1 5 5 C 1.37965 * 120.15078 * 0.50781 * 4 3 2 6 6 C 1.50703 * 120.07666 * 179.77054 * 5 4 3 7 7 H 1.09002 * 109.47152 * 219.72236 * 6 5 4 8 8 N 1.46899 * 109.47107 * 339.72149 * 6 5 4 9 9 C 1.50699 * 109.47227 * 99.72353 * 6 5 4 10 10 H 1.07999 * 120.00019 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00129 * 180.02562 * 9 6 5 12 12 N 1.31519 * 119.99723 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99900 * 179.97438 * 11 9 6 14 14 H 1.48491 * 109.47312 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46948 * 119.99892 * 13 11 9 16 16 H 1.48500 * 109.46809 * 239.99811 * 13 11 9 17 17 C 1.39607 * 119.84724 * 359.49514 * 5 4 3 18 18 C 1.47724 * 120.15148 * 180.23200 * 17 5 4 19 19 O 1.21474 * 120.00004 * 359.97438 * 18 17 5 20 20 O 1.34705 * 120.00080 * 179.97438 * 18 17 5 21 21 C 1.37920 * 119.92394 * 180.02562 * 2 1 3 22 22 H 1.08995 * 109.47121 * 269.97817 * 1 2 3 23 23 H 1.08996 * 109.47009 * 29.97932 * 1 2 3 24 24 H 1.09001 * 109.46656 * 149.97981 * 1 2 3 25 25 H 1.07997 * 119.84558 * 0.04058 * 3 2 1 26 26 H 1.08004 * 119.92510 * 180.25296 * 4 3 2 27 27 H 1.00893 * 111.00096 * 296.05175 * 8 6 5 28 28 H 1.00903 * 110.99833 * 59.99796 * 8 6 5 29 29 H 0.97003 * 119.99231 * 179.97438 * 12 11 9 30 30 H 0.96711 * 117.00292 * 179.97438 * 20 18 17 31 31 H 1.07999 * 120.08429 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5808 1.2085 0.0049 5 6 4.2816 0.0201 -0.0008 6 6 5.7886 0.0321 -0.0008 7 1 6.1582 -0.7523 -0.6613 8 7 6.2680 1.3373 -0.4745 9 6 6.2928 -0.2106 1.3985 10 1 5.5921 -0.3583 2.2069 11 6 7.6487 -0.2431 1.6468 12 7 8.5019 -0.0628 0.6623 13 14 8.2736 -0.5433 3.3814 14 1 7.1200 -0.7140 4.3006 15 1 9.1087 -1.7711 3.4011 16 1 9.0890 0.6172 3.8214 17 6 3.5916 -1.1935 -0.0009 18 6 4.3352 -2.4699 -0.0018 19 8 5.5500 -2.4651 -0.0030 20 8 3.6663 -3.6391 -0.0013 21 6 2.1950 -1.1953 -0.0005 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6537 2.1325 0.0007 26 1 4.1134 2.1481 0.0090 27 1 5.9973 1.4956 -1.4335 28 1 5.9385 2.0817 0.1217 29 1 9.4558 -0.0853 0.8371 30 1 4.1962 -4.4481 -0.0023 31 1 1.6552 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238476721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:48 Heat of formation + Delta-G solvation = -83.107326 kcal Electronic energy + Delta-G solvation = -16609.291538 eV Core-core repulsion = 13854.682249 eV Total energy + Delta-G solvation = -2754.609289 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.43310 -39.74545 -37.20173 -36.27821 -33.92897 -32.69190 -31.82187 -28.54675 -27.11666 -25.54990 -23.96265 -22.32515 -20.97694 -18.84512 -18.53177 -17.73964 -16.89359 -16.58623 -16.37631 -16.04204 -15.73203 -15.15751 -14.51027 -14.29324 -14.24162 -14.03891 -13.44883 -13.06732 -12.89633 -12.73002 -12.66552 -12.44192 -12.33074 -12.17469 -11.72304 -11.26520 -10.85387 -10.44998 -9.92076 -9.35607 -8.89674 -7.92089 -6.08054 -0.11267 0.49682 1.37280 1.38312 1.48471 1.76405 2.25679 2.46810 2.91545 3.32638 3.91173 3.98938 4.15445 4.29553 4.36161 4.55945 4.69542 4.77224 4.94149 4.97473 5.07191 5.31976 5.36721 5.43717 5.62193 5.72455 5.74619 5.86158 6.04253 6.29347 6.72205 7.11818 7.23981 7.29971 7.58968 9.12908 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.009096 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.577984 B = 3077.549194 C = 3532.504354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.121 4.121 3 C -0.075 4.075 4 C -0.151 4.151 5 C -0.051 4.051 6 C 0.250 3.750 7 H 0.039 0.961 8 N -0.823 5.823 9 C -0.506 4.506 10 H 0.030 0.970 11 C 0.034 3.966 12 N -0.882 5.882 13 Si 0.940 3.060 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.150 4.150 18 C 0.503 3.497 19 O -0.506 6.506 20 O -0.512 6.512 21 C -0.065 4.065 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.158 0.842 26 H 0.131 0.869 27 H 0.311 0.689 28 H 0.323 0.677 29 H 0.251 0.749 30 H 0.424 0.576 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.819 -0.618 -1.939 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.169 4.169 5 C -0.054 4.054 6 C 0.140 3.860 7 H 0.056 0.944 8 N -0.351 5.351 9 C -0.545 4.545 10 H 0.049 0.951 11 C -0.168 4.168 12 N -0.519 5.519 13 Si 0.766 3.234 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.152 4.152 18 C 0.347 3.653 19 O -0.395 6.395 20 O -0.326 6.326 21 C -0.083 4.083 22 H 0.097 0.903 23 H 0.101 0.899 24 H 0.095 0.905 25 H 0.176 0.824 26 H 0.149 0.851 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.060 0.940 30 H 0.285 0.715 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.771 -0.539 -1.856 15.889 hybrid contribution 0.449 -0.673 0.766 1.114 sum -15.322 -1.212 -1.090 15.408 Atomic orbital electron populations 1.20777 0.87806 1.04076 1.03272 1.20225 0.98220 0.91966 1.01725 1.21594 0.93024 0.99218 0.95477 1.21104 0.95138 0.97177 1.03471 1.21730 0.99825 0.92556 0.91249 1.18175 0.83163 0.88713 0.95914 0.94382 1.59017 1.68102 1.04059 1.03930 1.20723 0.91136 1.50141 0.92506 0.95130 1.25559 0.97316 0.94555 0.99368 1.70242 1.01163 1.48490 1.31966 0.85825 0.78242 0.77607 0.81730 1.19803 1.21190 1.20200 1.19071 0.94408 0.89814 1.11888 1.21286 0.85746 0.85034 0.73227 1.91070 1.16053 1.87644 1.44698 1.84465 1.44987 1.16814 1.86354 1.21497 0.91292 0.99795 0.95687 0.90313 0.89852 0.90508 0.82437 0.85143 0.87738 0.86356 0.94010 0.71539 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 10.01 71.24 0.71 -0.92 16 2 C -0.12 -3.07 5.87 -19.90 -0.12 -3.19 16 3 C -0.08 -2.01 9.69 22.33 0.22 -1.79 16 4 C -0.15 -5.27 9.24 22.23 0.21 -5.06 16 5 C -0.05 -2.20 5.05 -19.60 -0.10 -2.30 16 6 C 0.25 13.25 2.13 43.42 0.09 13.35 16 7 H 0.04 2.37 5.92 -2.39 -0.01 2.36 16 8 N -0.82 -40.25 8.02 -174.95 -1.40 -41.65 16 9 C -0.51 -29.74 7.42 25.60 0.19 -29.55 16 10 H 0.03 1.83 7.74 -2.91 -0.02 1.81 16 11 C 0.03 2.05 5.39 84.65 0.46 2.51 16 12 N -0.88 -55.24 12.77 21.45 0.27 -54.97 16 13 Si 0.94 47.00 29.54 68.60 2.03 49.02 16 14 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 15 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 16 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 17 C -0.15 -5.99 5.87 -20.10 -0.12 -6.11 16 18 C 0.50 21.00 8.21 70.33 0.58 21.58 16 19 O -0.51 -26.31 13.13 19.92 0.26 -26.05 16 20 O -0.51 -15.55 12.68 -56.15 -0.71 -16.26 16 21 C -0.06 -1.96 9.27 22.54 0.21 -1.75 16 22 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 24 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 25 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 26 H 0.13 4.30 6.24 -2.91 -0.02 4.29 16 27 H 0.31 13.51 9.06 -89.70 -0.81 12.70 16 28 H 0.32 14.60 7.28 -89.69 -0.65 13.95 16 29 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.42 9.08 9.11 -74.05 -0.67 8.41 16 31 H 0.15 3.77 7.61 -2.91 -0.02 3.75 16 Total: -1.00 -76.12 269.25 1.82 -74.29 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: -0.95 Total: 28.86 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 2.33 Total: -13.25 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -1.13 Total: -96.62 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.45 Total: -42.31 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -76.12 1.82 -74.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238476721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.815 kcal (2) G-P(sol) polarization free energy of solvation -76.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds