Wall clock time and date at job start Mon Mar 30 2020 03:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39649 * 120.07306 * 2 1 4 4 C 1.47718 * 120.15259 * 359.96147 * 3 2 1 5 5 O 1.21472 * 119.99904 * 353.87327 * 4 3 2 6 6 O 1.34715 * 120.00189 * 173.87858 * 4 3 2 7 7 C 1.39609 * 119.69999 * 179.97438 * 3 2 1 8 8 C 1.37973 * 119.84724 * 0.02562 * 7 3 2 9 9 C 1.38347 * 120.14712 * 0.02562 * 8 7 3 10 10 C 1.37920 * 120.07938 * 179.72988 * 2 1 3 11 11 C 1.50711 * 119.92049 * 359.97438 * 10 2 1 12 12 H 1.08998 * 109.47189 * 40.00274 * 11 10 2 13 13 N 1.46898 * 109.46535 * 160.00525 * 11 10 2 14 14 C 1.50697 * 109.46867 * 280.00278 * 11 10 2 15 15 H 1.07994 * 120.00527 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99789 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99632 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00180 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46896 * 60.00261 * 18 16 14 20 20 H 1.48502 * 109.47083 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47102 * 300.00211 * 18 16 14 22 22 H 1.09006 * 109.46698 * 83.24474 * 1 2 3 23 23 H 1.09000 * 109.47028 * 203.23921 * 1 2 3 24 24 H 1.09001 * 109.47310 * 323.24485 * 1 2 3 25 25 H 0.96702 * 116.99923 * 179.97438 * 6 4 3 26 26 H 1.08000 * 120.07833 * 180.02562 * 7 3 2 27 27 H 1.08000 * 119.92628 * 180.02562 * 8 7 3 28 28 H 1.07998 * 119.84415 * 179.97438 * 9 8 7 29 29 H 1.00897 * 111.00601 * 60.00083 * 13 11 10 30 30 H 1.00907 * 110.99748 * 183.95456 * 13 11 10 31 31 H 0.97008 * 119.99922 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.2085 0.0000 4 6 1.4733 2.4907 -0.0009 5 8 0.2638 2.4984 -0.1138 6 8 2.1455 3.6514 0.1235 7 6 3.6029 1.1994 0.0005 8 6 4.2817 -0.0018 0.0005 9 6 3.5821 -1.1953 -0.0005 10 6 2.1983 -1.1935 0.0056 11 6 1.4447 -2.4986 0.0124 12 1 0.5811 -2.4230 -0.6483 13 7 2.3269 -3.5757 -0.4562 14 6 0.9804 -2.8033 1.4133 15 1 1.2085 -2.1205 2.2183 16 6 0.2653 -3.9544 1.6675 17 7 -0.0112 -4.7867 0.6874 18 14 -0.3097 -4.3325 3.4041 19 1 -1.2017 -3.2440 3.8781 20 1 -1.0513 -5.6191 3.4109 21 1 0.8671 -4.4353 4.3038 22 1 -0.3633 0.1209 -1.0206 23 1 -0.3633 -0.9443 0.4055 24 1 -0.3634 0.8234 0.6149 25 1 1.6223 4.4647 0.1172 26 1 4.1502 2.1304 0.0010 27 1 5.3617 -0.0103 0.0014 28 1 4.1185 -2.1327 -0.0010 29 1 3.1357 -3.6660 0.1402 30 1 1.8269 -4.4497 -0.5223 31 1 -0.5140 -5.5967 0.8662 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238551127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:03 Heat of formation + Delta-G solvation = -72.283151 kcal Electronic energy + Delta-G solvation = -16438.182280 eV Core-core repulsion = 13684.042362 eV Total energy + Delta-G solvation = -2754.139917 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.23132 -38.52660 -35.93048 -34.80263 -32.10614 -31.75473 -29.64089 -26.51427 -26.08740 -23.92076 -22.74513 -20.34430 -19.88178 -17.64015 -16.71831 -16.51009 -15.47400 -15.34083 -14.93078 -14.74824 -14.01480 -13.41901 -13.13157 -12.64489 -12.56761 -12.20652 -11.72672 -11.55425 -11.39533 -11.28221 -11.20057 -11.01546 -10.78928 -10.56321 -10.09874 -9.80428 -9.44537 -8.74041 -8.37699 -7.94740 -7.28145 -6.14849 -4.31494 1.21040 1.96078 2.95549 3.21399 3.26769 3.28051 3.30575 4.23630 4.39050 5.07256 5.24442 5.38506 5.45362 5.73720 5.90301 5.95261 6.27930 6.36429 6.46848 6.50129 6.59683 6.69740 6.82302 7.03794 7.09533 7.16185 7.46335 7.67393 7.68981 8.01649 8.15089 8.60074 8.85812 9.03393 9.40185 10.82843 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.007854 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.992368 B = 3564.265342 C = 4036.343416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.012 4.012 3 C -0.146 4.146 4 C 0.525 3.475 5 O -0.511 6.511 6 O -0.518 6.518 7 C -0.086 4.086 8 C -0.149 4.149 9 C -0.072 4.072 10 C -0.046 4.046 11 C 0.241 3.759 12 H 0.055 0.945 13 N -0.852 5.852 14 C -0.543 4.543 15 H 0.056 0.944 16 C 0.068 3.932 17 N -0.892 5.892 18 Si 0.897 3.103 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.277 1.277 22 H 0.065 0.935 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.406 0.594 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.130 0.870 29 H 0.311 0.689 30 H 0.357 0.643 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 9.910 -0.880 11.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.013 4.013 3 C -0.147 4.147 4 C 0.371 3.629 5 O -0.402 6.402 6 O -0.330 6.330 7 C -0.104 4.104 8 C -0.167 4.167 9 C -0.090 4.090 10 C -0.046 4.046 11 C 0.132 3.868 12 H 0.073 0.927 13 N -0.382 5.382 14 C -0.583 4.583 15 H 0.074 0.926 16 C -0.135 4.135 17 N -0.531 5.531 18 Si 0.724 3.276 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.202 1.202 22 H 0.083 0.917 23 H 0.109 0.891 24 H 0.097 0.903 25 H 0.264 0.736 26 H 0.143 0.857 27 H 0.138 0.862 28 H 0.148 0.852 29 H 0.121 0.879 30 H 0.174 0.826 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.456 9.790 -1.636 11.326 hybrid contribution -0.833 -0.099 1.944 2.117 sum 4.623 9.691 0.308 10.742 Atomic orbital electron populations 1.21171 0.90237 1.04663 1.02267 1.19884 0.96949 0.90487 0.94005 1.18790 0.93553 0.89314 1.13011 1.21132 0.85479 0.84122 0.72121 1.90838 1.15372 1.87543 1.46402 1.84592 1.45496 1.17111 1.85806 1.21143 0.92554 0.98348 0.98355 1.21035 0.99563 0.92402 1.03677 1.21329 0.94328 0.97921 0.95468 1.20390 0.93567 0.95957 0.94710 1.17997 0.90403 0.83871 0.94575 0.92712 1.59573 1.11431 1.12211 1.55013 1.21711 1.35686 1.06511 0.94388 0.92591 1.25006 0.95028 0.96055 0.97389 1.69728 1.39859 1.12161 1.31317 0.86574 0.78959 0.77655 0.84397 1.20037 1.21149 1.20232 0.91668 0.89102 0.90310 0.73620 0.85708 0.86199 0.85249 0.87917 0.82618 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.13 36.01 0.29 -2.32 16 2 C -0.01 -0.25 5.91 -104.21 -0.62 -0.87 16 3 C -0.15 -2.62 5.87 -104.99 -0.62 -3.24 16 4 C 0.53 8.66 8.20 34.60 0.28 8.95 16 5 O -0.51 -9.48 14.14 -19.24 -0.27 -9.75 16 6 O -0.52 -6.39 12.70 -40.53 -0.51 -6.90 16 7 C -0.09 -1.36 9.62 -39.17 -0.38 -1.73 16 8 C -0.15 -2.35 10.03 -39.64 -0.40 -2.75 16 9 C -0.07 -1.34 9.25 -39.49 -0.37 -1.70 16 10 C -0.05 -0.97 5.02 -104.68 -0.53 -1.50 16 11 C 0.24 5.79 2.27 -70.01 -0.16 5.63 16 12 H 0.06 1.45 7.15 -51.93 -0.37 1.08 16 13 N -0.85 -19.41 8.65 -6.65 -0.06 -19.46 16 14 C -0.54 -14.06 7.59 -34.44 -0.26 -14.32 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.07 1.78 5.38 -17.82 -0.10 1.68 16 17 N -0.89 -23.84 11.53 55.43 0.64 -23.20 16 18 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 22 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 23 H 0.09 2.03 5.63 -51.93 -0.29 1.74 16 24 H 0.08 1.59 5.87 -51.93 -0.30 1.28 16 25 H 0.41 2.98 9.11 45.56 0.42 3.40 16 26 H 0.12 1.65 7.63 -52.49 -0.40 1.25 16 27 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 28 H 0.13 2.27 6.23 -52.49 -0.33 1.95 16 29 H 0.31 6.64 7.28 -39.29 -0.29 6.36 16 30 H 0.36 8.76 7.08 -39.29 -0.28 8.49 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 263.37 15.07 3.97 3.97 Total: -1.00 -28.53 263.37 -6.32 -34.85 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -2.23 Total: 17.10 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -2.84 Total: -12.16 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.58 Total: -42.67 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.79 Total: -16.66 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.53 -6.32 -34.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238551127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.431 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds