Wall clock time and date at job start Mon Mar 30 2020 03:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39649 * 120.07306 * 2 1 4 4 C 1.47718 * 120.15259 * 359.96147 * 3 2 1 5 5 O 1.21472 * 119.99904 * 353.87327 * 4 3 2 6 6 O 1.34715 * 120.00189 * 173.87858 * 4 3 2 7 7 C 1.39609 * 119.69999 * 179.97438 * 3 2 1 8 8 C 1.37973 * 119.84724 * 0.02562 * 7 3 2 9 9 C 1.38347 * 120.14712 * 0.02562 * 8 7 3 10 10 C 1.37920 * 120.07938 * 179.72988 * 2 1 3 11 11 C 1.50711 * 119.92049 * 359.97438 * 10 2 1 12 12 H 1.08998 * 109.47189 * 40.00274 * 11 10 2 13 13 N 1.46898 * 109.46535 * 160.00525 * 11 10 2 14 14 C 1.50697 * 109.46867 * 280.00278 * 11 10 2 15 15 H 1.07994 * 120.00527 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99789 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99632 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00180 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46896 * 60.00261 * 18 16 14 20 20 H 1.48502 * 109.47083 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47102 * 300.00211 * 18 16 14 22 22 H 1.09006 * 109.46698 * 83.24474 * 1 2 3 23 23 H 1.09000 * 109.47028 * 203.23921 * 1 2 3 24 24 H 1.09001 * 109.47310 * 323.24485 * 1 2 3 25 25 H 0.96702 * 116.99923 * 179.97438 * 6 4 3 26 26 H 1.08000 * 120.07833 * 180.02562 * 7 3 2 27 27 H 1.08000 * 119.92628 * 180.02562 * 8 7 3 28 28 H 1.07998 * 119.84415 * 179.97438 * 9 8 7 29 29 H 1.00897 * 111.00601 * 60.00083 * 13 11 10 30 30 H 1.00907 * 110.99748 * 183.95456 * 13 11 10 31 31 H 0.97008 * 119.99922 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.2085 0.0000 4 6 1.4733 2.4907 -0.0009 5 8 0.2638 2.4984 -0.1138 6 8 2.1455 3.6514 0.1235 7 6 3.6029 1.1994 0.0005 8 6 4.2817 -0.0018 0.0005 9 6 3.5821 -1.1953 -0.0005 10 6 2.1983 -1.1935 0.0056 11 6 1.4447 -2.4986 0.0124 12 1 0.5811 -2.4230 -0.6483 13 7 2.3269 -3.5757 -0.4562 14 6 0.9804 -2.8033 1.4133 15 1 1.2085 -2.1205 2.2183 16 6 0.2653 -3.9544 1.6675 17 7 -0.0112 -4.7867 0.6874 18 14 -0.3097 -4.3325 3.4041 19 1 -1.2017 -3.2440 3.8781 20 1 -1.0513 -5.6191 3.4109 21 1 0.8671 -4.4353 4.3038 22 1 -0.3633 0.1209 -1.0206 23 1 -0.3633 -0.9443 0.4055 24 1 -0.3634 0.8234 0.6149 25 1 1.6223 4.4647 0.1172 26 1 4.1502 2.1304 0.0010 27 1 5.3617 -0.0103 0.0014 28 1 4.1185 -2.1327 -0.0010 29 1 3.1357 -3.6660 0.1402 30 1 1.8269 -4.4497 -0.5223 31 1 -0.5140 -5.5967 0.8662 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238551127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:03 Heat of formation + Delta-G solvation = -92.042418 kcal Electronic energy + Delta-G solvation = -16439.039106 eV Core-core repulsion = 13684.042362 eV Total energy + Delta-G solvation = -2754.996743 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.53473 -39.91338 -37.10174 -36.57026 -33.71010 -33.47222 -31.22205 -28.09911 -27.93869 -25.35637 -24.37874 -21.70758 -21.37701 -18.90088 -18.58239 -17.98970 -16.84373 -16.75704 -16.56853 -16.36157 -15.63016 -14.91693 -14.67417 -14.27706 -13.98737 -13.82737 -13.38479 -13.18779 -13.04526 -12.84669 -12.75791 -12.49210 -12.42246 -12.31114 -11.95173 -11.36466 -11.01327 -10.72381 -9.78420 -9.48083 -9.16921 -8.12302 -6.36947 -0.15919 0.56136 1.37119 1.38897 1.46144 1.64121 2.13070 2.36068 2.93403 3.05097 3.94463 4.02058 4.22181 4.27886 4.40745 4.52729 4.78222 4.85740 4.89637 4.95442 5.10733 5.31173 5.41457 5.45021 5.59168 5.66472 5.68952 5.92755 6.03947 6.12655 6.64403 6.92024 7.04772 7.11705 7.38597 8.81877 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.007854 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.992368 B = 3564.265342 C = 4036.343416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.039 4.039 3 C -0.155 4.155 4 C 0.532 3.468 5 O -0.540 6.540 6 O -0.501 6.501 7 C -0.069 4.069 8 C -0.135 4.135 9 C -0.079 4.079 10 C -0.076 4.076 11 C 0.248 3.752 12 H 0.016 0.984 13 N -0.842 5.842 14 C -0.550 4.550 15 H 0.044 0.956 16 C 0.026 3.974 17 N -0.914 5.914 18 Si 0.953 3.047 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.271 1.271 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.431 0.569 26 H 0.162 0.838 27 H 0.164 0.836 28 H 0.135 0.865 29 H 0.320 0.680 30 H 0.346 0.654 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 11.645 -0.281 13.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.040 4.040 3 C -0.157 4.157 4 C 0.379 3.621 5 O -0.432 6.432 6 O -0.314 6.314 7 C -0.087 4.087 8 C -0.153 4.153 9 C -0.098 4.098 10 C -0.076 4.076 11 C 0.137 3.863 12 H 0.034 0.966 13 N -0.372 5.372 14 C -0.590 4.590 15 H 0.062 0.938 16 C -0.175 4.175 17 N -0.553 5.553 18 Si 0.779 3.221 19 H -0.203 1.203 20 H -0.206 1.206 21 H -0.196 1.196 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.293 0.707 26 H 0.180 0.820 27 H 0.181 0.819 28 H 0.153 0.847 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.569 11.563 -1.034 13.859 hybrid contribution -1.407 -0.511 1.724 2.283 sum 6.161 11.053 0.690 12.673 Atomic orbital electron populations 1.20971 0.91365 1.02801 1.01907 1.19892 0.96529 0.91621 0.95948 1.18986 0.94815 0.89211 1.12647 1.20859 0.84892 0.84803 0.71550 1.90832 1.16583 1.88089 1.47731 1.84507 1.45112 1.17041 1.84774 1.21581 0.91522 0.99952 0.95660 1.21456 1.01577 0.90998 1.01226 1.21486 0.93163 0.99673 0.95427 1.20190 0.94904 0.94743 0.97810 1.17725 0.89965 0.85876 0.92696 0.96586 1.59530 1.11292 1.11313 1.55043 1.21876 1.35780 1.06246 0.95100 0.93768 1.25666 0.95217 0.96052 1.00557 1.69824 1.40350 1.12421 1.32736 0.85693 0.78512 0.77317 0.80622 1.20324 1.20643 1.19650 0.91887 0.92121 0.90274 0.70733 0.82030 0.81893 0.84743 0.86932 0.83900 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.90 8.13 71.24 0.58 -4.32 16 2 C -0.04 -1.61 5.91 -19.60 -0.12 -1.73 16 3 C -0.16 -5.30 5.87 -20.10 -0.12 -5.42 16 4 C 0.53 16.39 8.20 70.33 0.58 16.96 16 5 O -0.54 -19.56 14.14 19.93 0.28 -19.28 16 6 O -0.50 -10.35 12.70 -56.25 -0.71 -11.07 16 7 C -0.07 -1.90 9.62 22.54 0.22 -1.69 16 8 C -0.13 -3.71 10.03 22.23 0.22 -3.49 16 9 C -0.08 -2.81 9.25 22.33 0.21 -2.60 16 10 C -0.08 -3.26 5.02 -19.90 -0.10 -3.36 16 11 C 0.25 12.33 2.27 43.43 0.10 12.43 16 12 H 0.02 0.92 7.15 -2.39 -0.02 0.90 16 13 N -0.84 -39.23 8.65 -174.95 -1.51 -40.75 16 14 C -0.55 -29.35 7.59 25.60 0.19 -29.15 16 15 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 16 C 0.03 1.36 5.38 84.65 0.46 1.82 16 17 N -0.91 -50.10 11.53 21.45 0.25 -49.85 16 18 Si 0.95 42.76 29.54 68.60 2.03 44.79 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 23 H 0.06 2.91 5.63 -2.39 -0.01 2.89 16 24 H 0.08 3.31 5.87 -2.39 -0.01 3.30 16 25 H 0.43 4.61 9.11 -74.06 -0.67 3.94 16 26 H 0.16 3.29 7.63 -2.91 -0.02 3.27 16 27 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 28 H 0.13 4.52 6.23 -2.91 -0.02 4.50 16 29 H 0.32 13.75 7.28 -89.70 -0.65 13.09 16 30 H 0.35 17.48 7.08 -89.69 -0.63 16.84 16 31 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -62.97 263.37 1.78 -61.19 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: -0.76 Total: 35.53 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 2.22 Total: -20.55 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -1.27 Total: -90.60 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.43 Total: -30.35 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -62.97 1.78 -61.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238551127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.853 kcal (2) G-P(sol) polarization free energy of solvation -62.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds