Wall clock time and date at job start Mon Mar 30 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86795 * 120.00506 * 2 1 4 4 H 1.48501 * 109.47265 * 270.00225 * 3 2 1 5 5 H 1.48506 * 109.46680 * 29.99990 * 3 2 1 6 6 H 1.48494 * 109.47482 * 149.99649 * 3 2 1 7 7 C 1.39949 * 119.99385 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99842 * 197.85052 * 7 2 1 9 9 C 1.41389 * 120.00418 * 17.85408 * 7 2 1 10 10 C 1.40724 * 120.24068 * 24.38176 * 9 7 2 11 11 C 1.37614 * 119.74138 * 180.29934 * 10 9 7 12 12 C 1.38644 * 120.24958 * 359.46750 * 11 10 9 13 13 C 1.50701 * 119.74985 * 180.26190 * 12 11 10 14 14 C 1.53005 * 109.47024 * 270.25266 * 13 12 11 15 15 H 1.08997 * 109.46966 * 305.00027 * 14 13 12 16 16 N 1.46905 * 109.46914 * 64.99732 * 14 13 12 17 17 C 1.50698 * 109.47246 * 184.99801 * 14 13 12 18 18 O 1.20821 * 120.00173 * 259.99972 * 17 14 13 19 19 O 1.34234 * 119.99493 * 79.99708 * 17 14 13 20 20 C 1.38627 * 120.50118 * 0.51164 * 12 11 10 21 21 C 1.37619 * 120.24541 * 359.77097 * 20 12 11 22 22 H 0.96998 * 119.99364 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.13014 * 0.02562 * 10 9 7 24 24 H 1.08002 * 119.87775 * 179.72611 * 11 10 9 25 25 H 1.09007 * 109.47230 * 30.24799 * 13 12 11 26 26 H 1.08993 * 109.47104 * 150.25328 * 13 12 11 27 27 H 1.00896 * 110.99611 * 60.00365 * 16 14 13 28 28 H 1.00897 * 110.99779 * 183.95369 * 16 14 13 29 29 H 0.96700 * 116.99187 * 179.97438 * 19 17 14 30 30 H 1.08002 * 119.87772 * 179.74098 * 20 12 11 31 31 H 1.08008 * 120.12319 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4400 0.7001 7 6 2.0079 -1.2121 0.0005 8 1 3.0489 -1.2345 0.2873 9 6 1.3520 -2.4072 -0.3743 10 6 0.2206 -2.3626 -1.2100 11 6 -0.4136 -3.5317 -1.5634 12 6 0.0647 -4.7509 -1.1084 13 6 -0.6350 -6.0246 -1.5072 14 6 -1.7235 -6.3508 -0.4827 15 1 -1.2843 -6.3900 0.5141 16 7 -2.7595 -5.3099 -0.5207 17 6 -2.3402 -7.6856 -0.8127 18 8 -3.3976 -7.7351 -1.3953 19 8 -1.7148 -8.8196 -0.4594 20 6 1.1787 -4.8067 -0.2852 21 6 1.8253 -3.6499 0.0857 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1512 -1.4143 -1.5690 24 1 -1.2847 -3.4997 -2.2011 25 1 -1.0879 -5.8978 -2.4906 26 1 0.0872 -6.8402 -1.5422 27 1 -3.1822 -5.2538 -1.4352 28 1 -3.4570 -5.4678 0.1910 29 1 -2.1494 -9.6514 -0.6924 30 1 1.5402 -5.7616 0.0668 31 1 2.6928 -3.6957 0.7275 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238593278.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:36 Heat of formation + Delta-G solvation = -86.535187 kcal Electronic energy + Delta-G solvation = -15886.134579 eV Core-core repulsion = 13131.376647 eV Total energy + Delta-G solvation = -2754.757932 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36236 -37.70895 -36.29572 -35.11823 -33.43803 -30.63256 -29.22679 -28.04710 -25.66693 -23.38135 -20.97634 -20.67459 -19.71008 -18.19234 -17.22439 -16.76952 -16.02913 -15.36840 -15.09153 -14.31716 -14.10993 -13.68781 -13.32718 -12.97882 -12.47216 -11.90253 -11.84197 -11.60861 -11.49042 -11.29783 -11.00323 -10.91793 -10.75114 -10.35232 -10.27318 -9.54573 -9.30023 -9.06577 -8.73555 -7.34021 -7.21916 -6.69527 -4.28214 2.14588 2.80680 3.08824 3.10765 3.13808 3.17054 3.30462 3.97440 4.61080 4.64822 5.25807 5.29014 5.46824 5.82572 5.95722 6.15174 6.32608 6.42108 6.45691 6.52878 7.02780 7.12914 7.16132 7.37769 7.44941 7.52461 7.69788 7.86664 7.93934 8.13109 8.21834 8.38002 8.72445 8.96716 9.05770 10.24537 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.055695 B = 0.005274 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.615912 B = 5307.710179 C = 5616.196059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.111 3.889 10 C -0.169 4.169 11 C -0.069 4.069 12 C -0.203 4.203 13 C -0.039 4.039 14 C 0.110 3.890 15 H 0.115 0.885 16 N -0.796 5.796 17 C 0.443 3.557 18 O -0.532 6.532 19 O -0.516 6.516 20 C -0.088 4.088 21 C -0.228 4.228 22 H 0.279 0.721 23 H 0.116 0.884 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.348 0.652 28 H 0.340 0.660 29 H 0.400 0.600 30 H 0.085 0.915 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 -9.087 -0.984 9.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.109 3.891 10 C -0.188 4.188 11 C -0.088 4.088 12 C -0.204 4.204 13 C -0.077 4.077 14 C -0.005 4.005 15 H 0.133 0.867 16 N -0.325 5.325 17 C 0.284 3.716 18 O -0.421 6.421 19 O -0.325 6.325 20 C -0.106 4.106 21 C -0.248 4.248 22 H 0.090 0.910 23 H 0.133 0.867 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.258 0.742 30 H 0.103 0.897 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.641 -8.044 -0.849 8.509 hybrid contribution -0.777 -0.626 -0.231 1.024 sum -3.419 -8.670 -1.080 9.382 Atomic orbital electron populations 1.69847 1.07505 1.29034 1.35260 1.25892 0.94692 1.01178 0.92367 0.86355 0.80511 0.80824 0.79254 1.19343 1.20396 1.18699 1.19594 0.98095 0.91385 1.40401 0.90614 1.17618 0.91188 0.91931 0.88365 1.21295 0.99411 0.96796 1.01311 1.20413 0.97147 0.92335 0.98881 1.18637 1.00313 0.92366 1.09063 1.20203 0.94282 0.97575 0.95615 1.21675 0.94376 0.80600 1.03852 0.86708 1.59029 1.18313 1.44549 1.10594 1.26065 0.83179 0.88043 0.74324 1.90672 1.23679 1.88138 1.39584 1.84670 1.54641 1.17381 1.75832 1.20356 0.95867 0.96344 0.98058 1.20914 1.03834 0.92934 1.07096 0.90986 0.86662 0.89616 0.92273 0.91470 0.83809 0.84699 0.74245 0.89677 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.63 10.95 55.55 0.61 -20.02 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.47 -12.42 9.05 -37.74 -0.34 -12.77 16 8 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 9 C 0.11 2.97 5.58 -106.83 -0.60 2.37 16 10 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 11 C -0.07 -1.58 9.25 -39.66 -0.37 -1.95 16 12 C -0.20 -4.21 4.98 -104.33 -0.52 -4.73 16 13 C -0.04 -0.64 4.97 -27.88 -0.14 -0.78 16 14 C 0.11 1.63 3.25 -68.86 -0.22 1.41 16 15 H 0.12 1.73 8.14 -51.93 -0.42 1.30 16 16 N -0.80 -12.02 8.35 -5.65 -0.05 -12.06 16 17 C 0.44 6.09 7.57 36.00 0.27 6.36 16 18 O -0.53 -8.41 17.01 -18.75 -0.32 -8.73 16 19 O -0.52 -5.76 13.42 -39.27 -0.53 -6.29 16 20 C -0.09 -1.91 9.67 -39.66 -0.38 -2.29 16 21 C -0.23 -5.57 9.80 -38.87 -0.38 -5.95 16 22 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 23 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 24 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 25 H 0.06 0.95 8.08 -51.92 -0.42 0.53 16 26 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 27 H 0.35 5.09 8.58 -39.29 -0.34 4.76 16 28 H 0.34 4.52 9.06 -39.29 -0.36 4.17 16 29 H 0.40 2.68 9.10 45.56 0.41 3.09 16 30 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.09 2.07 8.06 -52.48 -0.42 1.64 16 LS Contribution 276.18 15.07 4.16 4.16 Total: -1.00 -29.50 276.18 -6.94 -36.44 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -2.68 Total: 13.95 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -3.11 Total: -21.19 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.56 Total: -32.08 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.85 Total: -15.02 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.50 -6.94 -36.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238593278.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.094 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds