Wall clock time and date at job start Mon Mar 30 2020 03:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86795 * 120.00506 * 2 1 4 4 H 1.48501 * 109.47265 * 270.00225 * 3 2 1 5 5 H 1.48506 * 109.46680 * 29.99990 * 3 2 1 6 6 H 1.48494 * 109.47482 * 149.99649 * 3 2 1 7 7 C 1.39949 * 119.99385 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99842 * 197.85052 * 7 2 1 9 9 C 1.41389 * 120.00418 * 17.85408 * 7 2 1 10 10 C 1.40724 * 120.24068 * 24.38176 * 9 7 2 11 11 C 1.37614 * 119.74138 * 180.29934 * 10 9 7 12 12 C 1.38644 * 120.24958 * 359.46750 * 11 10 9 13 13 C 1.50701 * 119.74985 * 180.26190 * 12 11 10 14 14 C 1.53005 * 109.47024 * 270.25266 * 13 12 11 15 15 H 1.08997 * 109.46966 * 305.00027 * 14 13 12 16 16 N 1.46905 * 109.46914 * 64.99732 * 14 13 12 17 17 C 1.50698 * 109.47246 * 184.99801 * 14 13 12 18 18 O 1.20821 * 120.00173 * 259.99972 * 17 14 13 19 19 O 1.34234 * 119.99493 * 79.99708 * 17 14 13 20 20 C 1.38627 * 120.50118 * 0.51164 * 12 11 10 21 21 C 1.37619 * 120.24541 * 359.77097 * 20 12 11 22 22 H 0.96998 * 119.99364 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.13014 * 0.02562 * 10 9 7 24 24 H 1.08002 * 119.87775 * 179.72611 * 11 10 9 25 25 H 1.09007 * 109.47230 * 30.24799 * 13 12 11 26 26 H 1.08993 * 109.47104 * 150.25328 * 13 12 11 27 27 H 1.00896 * 110.99611 * 60.00365 * 16 14 13 28 28 H 1.00897 * 110.99779 * 183.95369 * 16 14 13 29 29 H 0.96700 * 116.99187 * 179.97438 * 19 17 14 30 30 H 1.08002 * 119.87772 * 179.74098 * 20 12 11 31 31 H 1.08008 * 120.12319 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4400 0.7001 7 6 2.0079 -1.2121 0.0005 8 1 3.0489 -1.2345 0.2873 9 6 1.3520 -2.4072 -0.3743 10 6 0.2206 -2.3626 -1.2100 11 6 -0.4136 -3.5317 -1.5634 12 6 0.0647 -4.7509 -1.1084 13 6 -0.6350 -6.0246 -1.5072 14 6 -1.7235 -6.3508 -0.4827 15 1 -1.2843 -6.3900 0.5141 16 7 -2.7595 -5.3099 -0.5207 17 6 -2.3402 -7.6856 -0.8127 18 8 -3.3976 -7.7351 -1.3953 19 8 -1.7148 -8.8196 -0.4594 20 6 1.1787 -4.8067 -0.2852 21 6 1.8253 -3.6499 0.0857 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1512 -1.4143 -1.5690 24 1 -1.2847 -3.4997 -2.2011 25 1 -1.0879 -5.8978 -2.4906 26 1 0.0872 -6.8402 -1.5422 27 1 -3.1822 -5.2538 -1.4352 28 1 -3.4570 -5.4678 0.1910 29 1 -2.1494 -9.6514 -0.6924 30 1 1.5402 -5.7616 0.0668 31 1 2.6928 -3.6957 0.7275 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238593278.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:35 Heat of formation + Delta-G solvation = -106.806100 kcal Electronic energy + Delta-G solvation = -15887.013591 eV Core-core repulsion = 13131.376647 eV Total energy + Delta-G solvation = -2755.636945 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.44320 -39.44621 -37.32868 -36.53476 -35.15843 -32.27559 -31.06688 -29.59492 -27.19884 -24.91552 -22.75738 -22.05842 -21.27000 -19.22851 -19.12787 -17.89535 -17.20420 -17.10919 -16.32360 -15.85094 -15.57300 -15.38027 -14.87327 -14.32125 -14.13085 -13.68459 -13.31888 -13.17747 -12.92451 -12.64745 -12.60448 -12.31939 -12.25809 -12.00297 -11.80099 -11.31855 -11.13246 -10.92942 -9.89387 -9.20357 -9.08159 -8.56174 -6.25053 0.97092 1.16057 1.28366 1.39978 1.52786 1.56750 2.14353 2.24482 2.80506 3.48271 3.79147 4.13379 4.21075 4.28324 4.49815 4.63412 4.77804 4.86461 5.00626 5.17950 5.23493 5.49794 5.54108 5.58229 5.82541 6.03875 6.09674 6.20718 6.38557 6.42713 6.50088 6.82133 6.95296 7.03493 7.15197 8.40103 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.055695 B = 0.005274 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.615912 B = 5307.710179 C = 5616.196059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.506 4.506 8 H 0.071 0.929 9 C 0.076 3.924 10 C -0.194 4.194 11 C -0.072 4.072 12 C -0.183 4.183 13 C -0.036 4.036 14 C 0.113 3.887 15 H 0.117 0.883 16 N -0.812 5.812 17 C 0.457 3.543 18 O -0.553 6.553 19 O -0.509 6.509 20 C -0.089 4.089 21 C -0.245 4.245 22 H 0.285 0.715 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.349 0.651 28 H 0.349 0.651 29 H 0.423 0.577 30 H 0.121 0.879 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 -10.679 -1.069 11.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.536 4.536 8 H 0.089 0.911 9 C 0.074 3.926 10 C -0.214 4.214 11 C -0.091 4.091 12 C -0.184 4.184 13 C -0.074 4.074 14 C -0.002 4.002 15 H 0.134 0.866 16 N -0.342 5.342 17 C 0.299 3.701 18 O -0.444 6.444 19 O -0.321 6.321 20 C -0.107 4.107 21 C -0.265 4.265 22 H 0.096 0.904 23 H 0.112 0.888 24 H 0.119 0.881 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.164 0.836 28 H 0.163 0.837 29 H 0.284 0.716 30 H 0.139 0.861 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.712 -9.680 -0.928 10.095 hybrid contribution -0.804 -0.364 -0.217 0.909 sum -3.517 -10.044 -1.145 10.704 Atomic orbital electron populations 1.69906 1.08915 1.30208 1.36236 1.26707 0.95449 1.04337 0.91414 0.85255 0.79089 0.76229 0.79412 1.18801 1.19339 1.18312 1.19823 0.98229 0.92818 1.42740 0.91091 1.17961 0.92152 0.93066 0.89437 1.21255 1.00350 0.97164 1.02639 1.20630 0.97297 0.92281 0.98869 1.19056 0.99334 0.93529 1.06527 1.20190 0.95040 0.95793 0.96352 1.21436 0.93914 0.81554 1.03253 0.86572 1.59034 1.18902 1.45163 1.11123 1.25495 0.82611 0.88296 0.73730 1.90682 1.24633 1.88503 1.40605 1.84593 1.54339 1.17895 1.75226 1.20735 0.95551 0.96919 0.97457 1.21136 1.04442 0.93341 1.07561 0.90413 0.88813 0.88125 0.91561 0.89211 0.83611 0.83683 0.71592 0.86110 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.55 10.95 21.83 0.24 -44.31 16 2 C 0.04 1.83 5.14 85.26 0.44 2.27 16 3 Si 0.98 39.29 29.59 68.60 2.03 41.32 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.51 -28.11 9.05 23.46 0.21 -27.89 16 8 H 0.07 3.82 7.91 -2.91 -0.02 3.80 16 9 C 0.08 4.17 5.58 -21.29 -0.12 4.06 16 10 C -0.19 -10.38 8.70 22.73 0.20 -10.18 16 11 C -0.07 -3.28 9.25 22.22 0.21 -3.07 16 12 C -0.18 -7.25 4.98 -19.67 -0.10 -7.35 16 13 C -0.04 -1.06 4.97 29.85 0.15 -0.91 16 14 C 0.11 3.03 3.25 44.17 0.14 3.17 16 15 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 16 N -0.81 -23.00 8.35 -171.79 -1.43 -24.43 16 17 C 0.46 11.04 7.57 71.24 0.54 11.57 16 18 O -0.55 -15.98 17.01 21.98 0.37 -15.60 16 19 O -0.51 -9.30 13.42 -51.45 -0.69 -9.99 16 20 C -0.09 -3.68 9.67 22.22 0.21 -3.47 16 21 C -0.25 -12.04 9.80 22.73 0.22 -11.81 16 22 H 0.29 13.94 8.30 -92.71 -0.77 13.18 16 23 H 0.09 5.31 6.16 -2.91 -0.02 5.30 16 24 H 0.10 4.17 8.06 -2.91 -0.02 4.14 16 25 H 0.07 1.90 8.08 -2.38 -0.02 1.88 16 26 H 0.09 2.30 8.08 -2.39 -0.02 2.28 16 27 H 0.35 9.63 8.58 -89.70 -0.77 8.86 16 28 H 0.35 8.71 9.06 -89.70 -0.81 7.89 16 29 H 0.42 3.91 9.10 -74.06 -0.67 3.23 16 30 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -64.60 276.18 1.55 -63.05 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: -1.07 Total: 33.59 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 2.11 Total: -43.62 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -1.19 Total: -68.74 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.32 Total: -25.59 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -64.60 1.55 -63.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238593278.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.752 kcal (2) G-P(sol) polarization free energy of solvation -64.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds