Wall clock time and date at job start Mon Mar 30 2020 03:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86799 * 119.99747 * 2 1 4 4 H 1.48503 * 109.47035 * 269.99516 * 3 2 1 5 5 H 1.48498 * 109.47196 * 29.99885 * 3 2 1 6 6 H 1.48507 * 109.46886 * 150.00075 * 3 2 1 7 7 C 1.38756 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99863 * 0.02562 * 7 2 1 9 9 O 1.34918 * 119.99884 * 180.02562 * 7 2 1 10 10 C 1.34311 * 116.99739 * 180.02562 * 9 7 2 11 11 O 1.21212 * 120.00382 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99853 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.47232 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47117 * 304.99614 * 13 12 10 15 15 N 1.46896 * 109.47252 * 64.99821 * 13 12 10 16 16 C 1.50703 * 109.46987 * 185.00260 * 13 12 10 17 17 C 1.38235 * 120.00292 * 99.99885 * 16 13 12 18 18 C 1.38230 * 119.99899 * 179.97438 * 17 16 13 19 19 C 1.38235 * 120.00326 * 359.95697 * 18 17 16 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99503 * 279.97178 * 16 13 12 22 22 H 0.97000 * 120.00151 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.47217 * 59.99377 * 12 10 9 24 24 H 1.08998 * 109.47302 * 299.99788 * 12 10 9 25 25 H 1.00898 * 110.99993 * 296.04662 * 15 13 12 26 26 H 1.00901 * 110.99837 * 60.00149 * 15 13 12 27 27 H 1.08001 * 119.99730 * 359.97438 * 17 16 13 28 28 H 1.08000 * 120.00376 * 179.97438 * 18 17 16 29 29 H 1.08000 * 120.00616 * 179.72578 * 19 18 17 30 30 H 1.08001 * 120.00299 * 179.97438 * 20 19 18 31 31 H 1.07997 * 120.00455 * 0.02562 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5460 1.4402 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 1.4682 -2.1370 0.0005 9 8 3.3574 -1.2016 0.0011 10 6 3.9671 -2.3984 0.0010 11 8 3.3070 -3.4150 0.0010 12 6 5.4720 -2.4773 0.0010 13 6 5.9059 -3.9445 0.0016 14 1 5.4437 -4.4597 0.8437 15 7 5.4834 -4.5806 -1.2533 16 6 7.4056 -4.0248 0.1255 17 6 7.9844 -4.2978 1.3508 18 6 9.3600 -4.3719 1.4643 19 6 10.1570 -4.1740 0.3522 20 6 9.5782 -3.9024 -0.8734 21 6 8.2025 -3.8260 -0.9864 22 1 -0.4850 0.8400 -0.0004 23 1 5.8618 -1.9831 0.8910 24 1 5.8618 -1.9832 -0.8890 25 1 4.4774 -4.5971 -1.3295 26 1 5.8988 -4.1207 -2.0495 27 1 7.3617 -4.4531 2.2195 28 1 9.8123 -4.5848 2.4216 29 1 11.2319 -4.2275 0.4417 30 1 10.2008 -3.7474 -1.7421 31 1 7.7504 -3.6128 -1.9437 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238604342.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:38 Heat of formation + Delta-G solvation = -81.036127 kcal Electronic energy + Delta-G solvation = -15870.681420 eV Core-core repulsion = 13116.161945 eV Total energy + Delta-G solvation = -2754.519475 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.41956 -40.22303 -37.88112 -36.20234 -34.53680 -31.83857 -31.17096 -30.66275 -27.55154 -25.07722 -23.39154 -22.16843 -21.03927 -20.17733 -18.89505 -17.84771 -17.17040 -16.95925 -16.45913 -16.00251 -15.82980 -15.42589 -14.89201 -14.59941 -14.43129 -14.15912 -13.97162 -13.67670 -13.38782 -13.03550 -12.61109 -12.39361 -12.29938 -11.93593 -11.86737 -11.76029 -11.15340 -10.86841 -9.88010 -9.75068 -9.53754 -8.57828 -6.44963 0.46708 0.56740 1.24466 1.31631 1.48785 1.53956 2.23475 2.35712 2.88157 2.93078 3.60661 3.79818 3.88489 4.00260 4.21259 4.22737 4.34717 4.50212 4.56417 4.65297 4.73216 4.88964 5.12568 5.22498 5.45067 5.61299 5.67788 5.74516 5.85550 6.10737 6.17527 6.44771 6.55763 6.79866 7.54314 8.55058 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.041185 B = 0.005426 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.695942 B = 5158.921612 C = 5453.666090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.252 1.252 7 C -0.410 4.410 8 H 0.059 0.941 9 O -0.259 6.259 10 C 0.408 3.592 11 O -0.567 6.567 12 C -0.126 4.126 13 C 0.153 3.847 14 H 0.076 0.924 15 N -0.841 5.841 16 C -0.082 4.082 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.115 4.115 22 H 0.290 0.710 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.348 0.652 26 H 0.343 0.657 27 H 0.125 0.875 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.728 -3.057 -0.241 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.175 1.175 7 C -0.486 4.486 8 H 0.077 0.923 9 O -0.168 6.168 10 C 0.255 3.745 11 O -0.463 6.463 12 C -0.165 4.165 13 C 0.041 3.959 14 H 0.094 0.906 15 N -0.374 5.374 16 C -0.082 4.082 17 C -0.146 4.146 18 C -0.142 4.142 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.134 4.134 22 H 0.099 0.901 23 H 0.136 0.864 24 H 0.136 0.864 25 H 0.163 0.837 26 H 0.157 0.843 27 H 0.143 0.857 28 H 0.160 0.840 29 H 0.163 0.837 30 H 0.161 0.839 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.683 -3.864 0.035 22.025 hybrid contribution -1.208 1.177 -0.164 1.694 sum 20.475 -2.687 -0.129 20.651 Atomic orbital electron populations 1.69705 1.07600 1.30255 1.48045 1.25581 0.95966 1.02743 0.94126 0.85076 0.78947 0.75845 0.79833 1.18350 1.19007 1.17541 1.20330 0.77788 0.95795 1.54649 0.92335 1.83543 1.22025 1.33072 1.78181 1.24360 0.92862 0.81416 0.75834 1.90556 1.68447 1.36846 1.50407 1.22244 0.85431 1.01574 1.07282 1.19996 0.91917 0.89394 0.94626 0.90581 1.58996 1.15650 1.59233 1.03475 1.19630 0.93052 1.00767 0.94758 1.21233 0.96056 1.00316 0.96964 1.21399 0.93016 0.99772 0.99987 1.21509 1.01071 0.99196 0.92619 1.21438 0.94469 0.99539 0.98782 1.21116 0.94225 0.99857 0.98155 0.90056 0.86390 0.86435 0.83654 0.84317 0.85733 0.83995 0.83691 0.83896 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.38 13.96 21.63 0.30 -55.08 16 2 C 0.02 0.92 5.49 84.87 0.47 1.39 16 3 Si 0.98 43.39 28.62 68.60 1.96 45.36 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.41 -25.11 10.10 67.94 0.69 -24.42 16 8 H 0.06 4.08 7.09 -2.91 -0.02 4.06 16 9 O -0.26 -13.64 8.58 14.88 0.13 -13.52 16 10 C 0.41 18.67 7.71 71.24 0.55 19.22 16 11 O -0.57 -29.44 13.38 20.77 0.28 -29.16 16 12 C -0.13 -3.96 5.44 29.85 0.16 -3.80 16 13 C 0.15 4.53 2.67 44.17 0.12 4.65 16 14 H 0.08 2.55 7.82 -2.39 -0.02 2.53 16 15 N -0.84 -25.46 9.02 -171.80 -1.55 -27.01 16 16 C -0.08 -2.00 4.96 -19.87 -0.10 -2.10 16 17 C -0.13 -2.84 9.67 22.27 0.22 -2.62 16 18 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 19 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 20 C -0.12 -2.18 10.05 22.27 0.22 -1.95 16 21 C -0.12 -2.45 9.29 22.27 0.21 -2.24 16 22 H 0.29 15.75 8.31 -92.71 -0.77 14.98 16 23 H 0.12 3.30 8.14 -2.38 -0.02 3.28 16 24 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 25 H 0.35 12.54 6.89 -89.70 -0.62 11.92 16 26 H 0.34 8.69 7.35 -89.69 -0.66 8.04 16 27 H 0.12 2.61 8.04 -2.91 -0.02 2.59 16 28 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 29 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 30 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.13 2.41 6.66 -2.91 -0.02 2.39 16 Total: -1.00 -71.37 272.96 3.98 -67.39 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -0.12 Total: 27.75 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 2.98 Total: -15.73 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -1.25 Total: -82.09 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: 0.41 Total: -42.67 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.96 Total: 45.36 kcal Total: -71.37 3.98 -67.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238604342.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.645 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds