Wall clock time and date at job start Mon Mar 30 2020 03:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 119.99894 * 2 1 4 4 C 1.38215 * 120.00306 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99600 * 359.76553 * 4 3 2 6 6 C 1.38213 * 119.99925 * 0.46524 * 5 4 3 7 7 C 1.50700 * 119.99749 * 179.78301 * 6 5 4 8 8 O 1.45201 * 109.47372 * 269.72675 * 7 6 5 9 9 C 1.34661 * 116.99863 * 179.97438 * 8 7 6 10 10 O 1.21513 * 120.00164 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99878 * 179.72501 * 9 8 7 12 12 C 1.37200 * 119.99771 * 180.27624 * 11 9 8 13 13 H 1.07991 * 119.99989 * 0.02562 * 12 11 9 14 14 C 1.38889 * 119.99509 * 180.02562 * 12 11 9 15 15 N 1.31464 * 119.99945 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99710 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46768 * 60.00170 * 16 14 12 18 18 H 1.48490 * 109.47071 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47259 * 300.00242 * 16 14 12 20 20 C 1.38210 * 120.00395 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.46811 * 270.01877 * 1 2 3 22 22 H 1.09001 * 109.47601 * 30.01601 * 1 2 3 23 23 H 1.08999 * 109.46913 * 150.02454 * 1 2 3 24 24 H 1.08005 * 119.99814 * 359.97438 * 3 2 1 25 25 H 1.08003 * 120.00077 * 179.97438 * 4 3 2 26 26 H 1.08001 * 119.99534 * 180.25179 * 5 4 3 27 27 H 1.09003 * 109.46774 * 149.72591 * 7 6 5 28 28 H 1.08997 * 109.47073 * 29.72995 * 7 6 5 29 29 H 0.97001 * 119.99727 * 0.28445 * 11 9 8 30 30 H 0.97005 * 119.99622 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.99847 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0001 0.0038 6 6 3.5806 -1.1969 -0.0010 7 6 4.3342 -2.5019 -0.0012 8 8 4.5752 -2.9215 -1.3702 9 6 5.2431 -4.0774 -1.5467 10 8 5.6140 -4.7181 -0.5831 11 7 5.4950 -4.5268 -2.7922 12 6 6.1705 -5.7073 -2.9719 13 1 6.5000 -6.2767 -2.1155 14 6 6.4305 -6.1700 -4.2554 15 7 6.0297 -5.4766 -5.2979 16 14 7.3509 -7.7770 -4.5003 17 1 6.5906 -8.8843 -3.8668 18 1 7.4996 -8.0458 -5.9531 19 1 8.6944 -7.6782 -3.8755 20 6 2.1981 -1.1969 0.0005 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6582 2.1327 -0.0004 25 1 4.1203 2.1328 -0.0010 26 1 5.3517 0.0002 0.0075 27 1 3.7455 -3.2614 0.5134 28 1 5.2870 -2.3714 0.5119 29 1 5.1987 -4.0154 -3.5613 30 1 6.2116 -5.7996 -6.1943 31 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258643333.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:49 Heat of formation + Delta-G solvation = -67.709494 kcal Electronic energy + Delta-G solvation = -15509.634191 eV Core-core repulsion = 12755.692603 eV Total energy + Delta-G solvation = -2753.941589 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.62235 -38.83877 -35.79118 -33.90500 -33.00985 -31.69256 -31.12553 -27.12631 -26.37345 -24.74730 -22.09458 -20.80313 -20.22104 -18.19004 -17.02499 -16.50764 -15.85867 -15.59977 -14.84270 -14.75956 -14.32183 -13.83808 -13.47635 -13.24844 -13.03671 -12.59777 -12.22335 -12.15558 -11.76504 -11.53323 -11.12124 -11.01842 -10.88945 -10.44950 -10.23189 -9.91913 -9.54414 -9.21494 -8.81970 -8.62738 -8.05638 -6.41015 -3.86363 1.25363 1.39838 3.22173 3.22771 3.27278 3.42476 3.94919 4.06898 4.32085 4.76512 4.79499 4.92328 5.13534 5.27657 5.27688 5.41446 5.49629 5.53475 5.68464 5.77156 5.81254 6.02509 6.11402 6.13247 6.44978 6.54558 6.67057 7.00061 7.25549 7.55518 8.07458 8.50446 9.11658 9.45925 10.05676 10.77346 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.047326 B = 0.004510 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.499563 B = 6206.266999 C = 6308.434097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.121 4.121 5 C -0.101 4.101 6 C -0.082 4.082 7 C 0.132 3.868 8 O -0.380 6.380 9 C 0.584 3.416 10 O -0.617 6.617 11 N -0.541 5.541 12 C -0.297 4.297 13 H 0.105 0.895 14 C 0.024 3.976 15 N -0.901 5.901 16 Si 0.938 3.062 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.096 4.096 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.401 0.599 30 H 0.273 0.727 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.078 11.984 7.926 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.139 4.139 5 C -0.119 4.119 6 C -0.082 4.082 7 C 0.056 3.944 8 O -0.295 6.295 9 C 0.336 3.664 10 O -0.512 6.512 11 N -0.185 5.185 12 C -0.425 4.425 13 H 0.123 0.877 14 C -0.178 4.178 15 N -0.541 5.541 16 Si 0.765 3.235 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.114 4.114 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.138 0.862 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.235 0.765 30 H 0.083 0.917 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.909 11.682 8.197 16.316 hybrid contribution 0.367 -0.501 -0.556 0.833 sum -7.542 11.181 7.642 15.501 Atomic orbital electron populations 1.20777 0.91167 1.02845 1.02169 1.19896 0.96094 0.93061 1.00329 1.21035 0.94293 0.97370 1.00877 1.21104 0.94275 0.97862 1.00704 1.21117 1.00183 0.91814 0.98831 1.19694 0.93666 0.94161 1.00672 1.21381 0.99253 0.92119 0.81611 1.86218 1.72743 1.40563 1.29997 1.18023 0.82267 0.80532 0.85613 1.90793 1.60607 1.59751 1.40014 1.40569 1.52571 1.22401 1.02975 1.19604 1.32097 0.97024 0.93809 0.87675 1.25267 0.98072 0.99815 0.94671 1.69661 1.46591 1.39193 0.98678 0.85812 0.79701 0.80950 0.77083 1.19816 1.20869 1.19823 1.21007 0.93438 0.97876 0.99095 0.91302 0.91634 0.91399 0.86213 0.85946 0.85758 0.91090 0.91049 0.76506 0.91704 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.00 0.36 -0.64 16 2 C -0.09 -1.11 5.88 -104.63 -0.62 -1.72 16 3 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 4 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 5 C -0.10 -1.37 9.70 -39.58 -0.38 -1.76 16 6 C -0.08 -1.24 5.52 -104.62 -0.58 -1.82 16 7 C 0.13 2.36 5.60 36.01 0.20 2.56 16 8 O -0.38 -8.44 10.26 -40.38 -0.41 -8.86 16 9 C 0.58 15.22 8.70 54.06 0.47 15.69 16 10 O -0.62 -17.44 15.71 -19.28 -0.30 -17.74 16 11 N -0.54 -14.76 5.29 -15.38 -0.08 -14.84 16 12 C -0.30 -8.49 9.68 -14.91 -0.14 -8.63 16 13 H 0.11 3.08 7.16 -52.49 -0.38 2.70 16 14 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 15 N -0.90 -25.04 13.05 55.49 0.72 -24.32 16 16 Si 0.94 21.13 29.55 -169.99 -5.02 16.10 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C -0.10 -1.32 9.36 -39.59 -0.37 -1.69 16 21 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 23 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 24 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 25 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 26 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 27 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 28 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 29 H 0.40 10.69 8.01 -40.82 -0.33 10.36 16 30 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 281.07 15.07 4.24 4.24 Total: -1.00 -31.64 281.07 -6.43 -38.07 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -3.63 Total: 8.31 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.94 Total: -0.95 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.64 Total: -39.16 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.72 Total: -26.60 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.64 -6.43 -38.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258643333.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.643 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds