Wall clock time and date at job start Mon Mar 30 2020 03:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 119.99894 * 2 1 4 4 C 1.38215 * 120.00306 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99600 * 359.76553 * 4 3 2 6 6 C 1.38213 * 119.99925 * 0.46524 * 5 4 3 7 7 C 1.50700 * 119.99749 * 179.78301 * 6 5 4 8 8 O 1.45201 * 109.47372 * 269.72675 * 7 6 5 9 9 C 1.34661 * 116.99863 * 179.97438 * 8 7 6 10 10 O 1.21513 * 120.00164 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99878 * 179.72501 * 9 8 7 12 12 C 1.37200 * 119.99771 * 180.27624 * 11 9 8 13 13 H 1.07991 * 119.99989 * 0.02562 * 12 11 9 14 14 C 1.38889 * 119.99509 * 180.02562 * 12 11 9 15 15 N 1.31464 * 119.99945 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99710 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46768 * 60.00170 * 16 14 12 18 18 H 1.48490 * 109.47071 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47259 * 300.00242 * 16 14 12 20 20 C 1.38210 * 120.00395 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.46811 * 270.01877 * 1 2 3 22 22 H 1.09001 * 109.47601 * 30.01601 * 1 2 3 23 23 H 1.08999 * 109.46913 * 150.02454 * 1 2 3 24 24 H 1.08005 * 119.99814 * 359.97438 * 3 2 1 25 25 H 1.08003 * 120.00077 * 179.97438 * 4 3 2 26 26 H 1.08001 * 119.99534 * 180.25179 * 5 4 3 27 27 H 1.09003 * 109.46774 * 149.72591 * 7 6 5 28 28 H 1.08997 * 109.47073 * 29.72995 * 7 6 5 29 29 H 0.97001 * 119.99727 * 0.28445 * 11 9 8 30 30 H 0.97005 * 119.99622 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.99847 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0001 0.0038 6 6 3.5806 -1.1969 -0.0010 7 6 4.3342 -2.5019 -0.0012 8 8 4.5752 -2.9215 -1.3702 9 6 5.2431 -4.0774 -1.5467 10 8 5.6140 -4.7181 -0.5831 11 7 5.4950 -4.5268 -2.7922 12 6 6.1705 -5.7073 -2.9719 13 1 6.5000 -6.2767 -2.1155 14 6 6.4305 -6.1700 -4.2554 15 7 6.0297 -5.4766 -5.2979 16 14 7.3509 -7.7770 -4.5003 17 1 6.5906 -8.8843 -3.8668 18 1 7.4996 -8.0458 -5.9531 19 1 8.6944 -7.6782 -3.8755 20 6 2.1981 -1.1969 0.0005 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6582 2.1327 -0.0004 25 1 4.1203 2.1328 -0.0010 26 1 5.3517 0.0002 0.0075 27 1 3.7455 -3.2614 0.5134 28 1 5.2870 -2.3714 0.5119 29 1 5.1987 -4.0154 -3.5613 30 1 6.2116 -5.7996 -6.1943 31 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258643333.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:49 Heat of formation + Delta-G solvation = -87.573610 kcal Electronic energy + Delta-G solvation = -15510.495564 eV Core-core repulsion = 12755.692603 eV Total energy + Delta-G solvation = -2754.802961 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.21149 -40.22607 -37.65082 -36.02038 -34.06648 -33.37648 -32.57848 -28.21985 -27.64466 -26.64589 -23.10222 -22.46774 -21.56420 -20.31782 -18.98635 -17.74948 -17.40926 -17.24201 -16.40896 -16.15992 -15.73214 -15.47175 -14.62854 -14.51750 -14.21804 -13.96919 -13.55323 -13.54428 -13.04065 -12.91343 -12.81692 -12.48725 -12.10227 -12.04841 -11.95200 -11.68031 -11.52870 -11.30650 -10.18117 -9.85403 -9.58804 -8.50467 -6.05352 0.18987 0.43238 1.41761 1.43221 1.53830 1.79330 2.02942 2.39478 2.86362 3.15816 3.59986 3.78767 4.00213 4.11876 4.18698 4.23177 4.35088 4.50168 4.56324 4.78732 4.85605 4.95312 5.08661 5.26009 5.29560 5.45734 5.50903 5.60096 5.64046 5.96236 6.06241 6.39014 6.98377 7.33490 7.96910 8.68119 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.047326 B = 0.004510 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.499563 B = 6206.266999 C = 6308.434097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.113 4.113 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.106 4.106 7 C 0.128 3.872 8 O -0.379 6.379 9 C 0.586 3.414 10 O -0.644 6.644 11 N -0.548 5.548 12 C -0.334 4.334 13 H 0.090 0.910 14 C -0.011 4.011 15 N -0.922 5.922 16 Si 1.008 2.992 17 H -0.267 1.267 18 H -0.269 1.269 19 H -0.268 1.268 20 C -0.113 4.113 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.154 0.846 25 H 0.152 0.848 26 H 0.127 0.873 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.400 0.600 30 H 0.281 0.719 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.714 13.084 7.700 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.097 4.097 3 C -0.130 4.130 4 C -0.137 4.137 5 C -0.134 4.134 6 C -0.106 4.106 7 C 0.054 3.946 8 O -0.294 6.294 9 C 0.338 3.662 10 O -0.541 6.541 11 N -0.193 5.193 12 C -0.462 4.462 13 H 0.108 0.892 14 C -0.211 4.211 15 N -0.562 5.562 16 Si 0.830 3.170 17 H -0.192 1.192 18 H -0.193 1.193 19 H -0.193 1.193 20 C -0.131 4.131 21 H 0.101 0.899 22 H 0.102 0.898 23 H 0.084 0.916 24 H 0.171 0.829 25 H 0.170 0.830 26 H 0.145 0.855 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.235 0.765 30 H 0.090 0.910 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.567 12.818 7.976 17.358 hybrid contribution 0.484 -0.706 -0.453 0.968 sum -8.083 12.112 7.523 16.390 Atomic orbital electron populations 1.20839 0.88979 1.03670 1.03338 1.20270 0.97766 0.92539 0.99130 1.21487 0.94287 0.98407 0.98856 1.21463 0.94855 0.98078 0.99326 1.21285 1.00606 0.92168 0.99377 1.19571 0.94270 0.93138 1.03634 1.21667 0.99754 0.93765 0.79404 1.86233 1.71697 1.38578 1.32890 1.18102 0.81937 0.81124 0.85001 1.90752 1.61704 1.60899 1.40730 1.40616 1.52844 1.22444 1.03367 1.19705 1.34201 0.98068 0.94217 0.89175 1.26217 0.98080 1.03131 0.93699 1.69741 1.46584 1.40609 0.99248 0.84785 0.78293 0.76290 0.77673 1.19239 1.19321 1.19253 1.21147 0.93017 0.99044 0.99906 0.89865 0.89806 0.91622 0.82858 0.83030 0.85526 0.91281 0.91102 0.76533 0.90975 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 10.01 71.23 0.71 -0.98 16 2 C -0.10 -2.10 5.88 -19.87 -0.12 -2.22 16 3 C -0.11 -2.14 9.70 22.27 0.22 -1.92 16 4 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 5 C -0.12 -3.09 9.70 22.27 0.22 -2.87 16 6 C -0.11 -3.26 5.52 -19.87 -0.11 -3.37 16 7 C 0.13 4.78 5.60 71.24 0.40 5.18 16 8 O -0.38 -17.41 10.26 -55.70 -0.57 -17.98 16 9 C 0.59 31.56 8.70 129.79 1.13 32.69 16 10 O -0.64 -37.61 15.71 19.80 0.31 -37.30 16 11 N -0.55 -30.79 5.29 -432.96 -2.29 -33.08 16 12 C -0.33 -19.48 9.68 84.01 0.81 -18.67 16 13 H 0.09 5.43 7.16 -2.91 -0.02 5.41 16 14 C -0.01 -0.62 5.50 84.90 0.47 -0.15 16 15 N -0.92 -51.02 13.05 21.66 0.28 -50.74 16 16 Si 1.01 42.73 29.55 68.60 2.03 44.75 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 18 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 20 C -0.11 -3.08 9.36 22.27 0.21 -2.88 16 21 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 23 H 0.06 1.03 8.09 -2.39 -0.02 1.01 16 24 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 25 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 26 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 27 H 0.07 2.54 8.08 -2.39 -0.02 2.52 16 28 H 0.07 2.59 8.08 -2.39 -0.02 2.57 16 29 H 0.40 21.99 8.01 -92.71 -0.74 21.25 16 30 H 0.28 14.42 8.31 -92.70 -0.77 13.65 16 31 H 0.12 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -68.06 281.07 4.31 -63.75 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.40 Total: 28.02 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 4.16 Total: 2.58 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -2.01 Total: -83.82 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -0.26 Total: -55.28 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -68.06 4.31 -63.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258643333.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.824 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds