Wall clock time and date at job start Mon Mar 30 2020 04:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.62388 * 2 1 4 4 C 1.38660 * 120.78804 * 89.61309 * 3 2 1 5 5 C 1.38205 * 119.16082 * 180.02562 * 4 3 2 6 6 N 1.31867 * 120.76614 * 359.97438 * 5 4 3 7 7 C 1.31874 * 121.72561 * 359.97438 * 6 5 4 8 8 C 1.38201 * 120.76346 * 0.02785 * 7 6 5 9 9 O 1.43361 * 109.50932 * 120.31899 * 2 1 3 10 10 C 1.44199 * 107.28747 * 119.13905 * 9 2 1 11 11 C 1.54916 * 103.07369 * 338.56337 * 10 9 2 12 12 H 1.08998 * 110.97450 * 277.44977 * 11 10 9 13 13 C 1.50700 * 111.00749 * 153.68315 * 11 10 9 14 14 H 1.08000 * 120.00197 * 6.19608 * 13 11 10 15 15 C 1.37871 * 120.00176 * 186.18780 * 13 11 10 16 16 N 1.31521 * 119.99782 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00393 * 180.02562 * 15 13 11 18 18 H 1.48490 * 109.47040 * 60.00012 * 17 15 13 19 19 H 1.48500 * 109.47081 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46870 * 300.00094 * 17 15 13 21 21 O 1.43752 * 109.62938 * 239.61332 * 2 1 3 22 22 H 1.08999 * 109.46853 * 59.99671 * 1 2 3 23 23 H 1.09003 * 109.46602 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46822 * 299.99644 * 1 2 3 25 25 H 1.07995 * 120.41642 * 0.28846 * 4 3 2 26 26 H 1.08003 * 119.61014 * 180.02562 * 5 4 3 27 27 H 1.08001 * 119.61619 * 180.02562 * 7 6 5 28 28 H 1.08004 * 120.41638 * 179.97438 * 8 7 6 29 29 H 1.08994 * 110.69445 * 220.16196 * 10 9 2 30 30 H 1.09002 * 110.84003 * 97.02590 * 10 9 2 31 31 H 0.96997 * 119.99558 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0362 1.4195 0.0000 4 6 2.2670 2.0907 1.1912 5 6 2.7307 3.3920 1.1519 6 7 2.9536 3.9942 0.0002 7 6 2.7463 3.3865 -1.1517 8 6 2.2831 2.0850 -1.1909 9 8 2.0088 -0.6822 1.1665 10 6 2.7839 -1.8111 0.7148 11 6 2.2619 -2.0408 -0.7256 12 1 1.3412 -2.6242 -0.7185 13 6 3.3107 -2.7035 -1.5811 14 1 4.2356 -3.0410 -1.1371 15 6 3.0895 -2.8791 -2.9305 16 7 1.9634 -2.4679 -3.4713 17 14 4.3893 -3.7012 -3.9909 18 1 4.6427 -5.0749 -3.4872 19 1 3.9121 -3.7687 -5.3955 20 1 5.6465 -2.9129 -3.9330 21 8 2.0130 -0.6849 -1.1680 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 2.0907 1.6013 2.1376 26 1 2.9133 3.9215 2.0753 27 1 2.9407 3.9120 -2.0750 28 1 2.1148 1.5928 -2.1375 29 1 2.5917 -2.6844 1.3381 30 1 3.8474 -1.5726 0.7056 31 1 1.8080 -2.5911 -4.4208 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258787537.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:53 Heat of formation + Delta-G solvation = -73.200455 kcal Electronic energy + Delta-G solvation = -16778.448470 eV Core-core repulsion = 14024.268776 eV Total energy + Delta-G solvation = -2754.179695 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.68087 -40.40998 -35.89694 -35.11898 -34.07541 -32.09868 -31.36018 -29.77667 -26.79411 -25.18514 -24.43075 -23.02103 -21.91194 -19.13138 -18.06386 -17.92359 -16.94167 -16.61264 -16.44681 -16.40518 -15.56492 -15.31108 -14.70892 -14.52371 -14.43081 -14.26048 -13.94294 -13.29160 -13.12707 -13.00824 -12.77813 -12.50182 -12.39233 -12.24201 -11.38352 -10.93099 -10.86084 -10.61849 -10.55350 -10.20076 -10.07320 -8.25883 -6.48315 0.20210 0.22106 1.40719 1.42902 1.50712 2.34903 2.63706 2.82930 2.95330 3.28094 3.58853 3.82955 4.04480 4.13792 4.17010 4.25541 4.28277 4.40429 4.52622 4.58306 4.68671 4.71566 4.89861 4.94888 5.04627 5.14656 5.31156 5.45978 5.61556 5.75761 5.98683 6.44083 6.71297 6.97679 7.28002 8.82347 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.030170 B = 0.008050 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.838284 B = 3477.255554 C = 3858.124070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.271 3.729 3 C -0.060 4.060 4 C -0.150 4.150 5 C 0.093 3.907 6 N -0.501 5.501 7 C 0.092 3.908 8 C -0.157 4.157 9 O -0.389 6.389 10 C 0.033 3.967 11 C 0.179 3.821 12 H 0.018 0.982 13 C -0.560 4.560 14 H 0.074 0.926 15 C 0.029 3.971 16 N -0.895 5.895 17 Si 0.966 3.034 18 H -0.261 1.261 19 H -0.281 1.281 20 H -0.271 1.271 21 O -0.371 6.371 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.150 0.850 26 H 0.191 0.809 27 H 0.179 0.821 28 H 0.124 0.876 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 6.959 7.008 9.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.193 3.807 3 C -0.069 4.069 4 C -0.170 4.170 5 C -0.063 4.063 6 N -0.211 5.211 7 C -0.064 4.064 8 C -0.177 4.177 9 O -0.311 6.311 10 C -0.043 4.043 11 C 0.124 3.876 12 H 0.035 0.965 13 C -0.597 4.597 14 H 0.092 0.908 15 C -0.174 4.174 16 N -0.531 5.531 17 Si 0.789 3.211 18 H -0.185 1.185 19 H -0.207 1.207 20 H -0.196 1.196 21 O -0.292 6.292 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.105 0.895 25 H 0.168 0.832 26 H 0.208 0.792 27 H 0.196 0.804 28 H 0.142 0.858 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.258 7.975 6.844 10.512 hybrid contribution 0.053 -1.652 -0.894 1.879 sum -0.206 6.323 5.950 8.684 Atomic orbital electron populations 1.22213 0.92575 1.02898 1.03178 1.22017 0.93376 0.87896 0.77374 1.20582 0.96631 0.94845 0.94836 1.22108 1.00120 0.96192 0.98560 1.23244 0.94249 0.91747 0.97074 1.67723 1.15831 1.38474 0.99054 1.23028 0.94732 0.91405 0.97210 1.22037 1.00275 0.96452 0.98899 1.88667 1.69955 1.42632 1.29851 1.24266 0.95451 0.88441 0.96155 1.21361 0.95067 0.80912 0.90279 0.96481 1.21217 1.04063 1.39845 0.94546 0.90789 1.25923 0.97455 0.94681 0.99384 1.70141 1.25472 1.44806 1.12720 0.85510 0.78856 0.79321 0.77379 1.18549 1.20651 1.19649 1.89547 1.85192 1.24612 1.29836 0.91258 0.92354 0.89492 0.83196 0.79173 0.80359 0.85842 0.87401 0.91916 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 9.17 71.98 0.66 -4.81 16 2 C 0.27 11.22 1.27 29.85 0.04 11.26 16 3 C -0.06 -2.24 4.98 -19.67 -0.10 -2.34 16 4 C -0.15 -4.58 9.44 22.36 0.21 -4.37 16 5 C 0.09 2.51 11.18 84.68 0.95 3.46 16 6 N -0.50 -15.18 10.36 -195.84 -2.03 -17.21 16 7 C 0.09 2.84 11.18 84.68 0.95 3.79 16 8 C -0.16 -5.70 9.44 22.36 0.21 -5.49 16 9 O -0.39 -15.67 9.97 -126.22 -1.26 -16.93 16 10 C 0.03 1.38 7.52 72.64 0.55 1.92 16 11 C 0.18 9.12 3.31 30.50 0.10 9.22 16 12 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 13 C -0.56 -30.47 8.85 25.60 0.23 -30.25 16 14 H 0.07 3.83 7.79 -2.91 -0.02 3.80 16 15 C 0.03 1.60 5.43 84.65 0.46 2.06 16 16 N -0.90 -51.81 12.96 21.45 0.28 -51.53 16 17 Si 0.97 42.35 29.54 68.60 2.03 44.37 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 O -0.37 -19.00 9.38 -126.22 -1.18 -20.18 16 22 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 23 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.15 4.09 7.60 -2.91 -0.02 4.06 16 26 H 0.19 3.52 8.06 -2.91 -0.02 3.50 16 27 H 0.18 4.37 8.06 -2.91 -0.02 4.35 16 28 H 0.12 4.93 7.58 -2.91 -0.02 4.91 16 29 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 30 H 0.06 2.63 8.03 -2.39 -0.02 2.61 16 31 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -63.69 271.41 3.20 -60.49 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 1.12 Total: 16.54 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 4.25 Total: -15.54 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -1.75 Total: -68.74 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -2.44 Total: -37.11 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -63.69 3.20 -60.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258787537.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.715 kcal (2) G-P(sol) polarization free energy of solvation -63.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds