Wall clock time and date at job start Mon Mar 30 2020 03:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38294 * 119.97222 * 2 1 4 4 C 1.38241 * 120.10815 * 179.76645 * 3 2 1 5 5 C 1.38171 * 120.05666 * 0.51557 * 4 3 2 6 6 C 1.38712 * 119.94384 * 359.74061 * 5 4 3 7 7 O 1.35920 * 120.05541 * 179.97438 * 6 5 4 8 8 C 1.34697 * 117.00306 * 75.40335 * 7 6 5 9 9 O 1.21518 * 119.99679 * 4.44145 * 8 7 6 10 10 N 1.34772 * 120.00607 * 184.43718 * 8 7 6 11 11 C 1.46504 * 119.99462 * 0.02562 * 10 8 7 12 12 C 1.37173 * 120.00538 * 180.02562 * 10 8 7 13 13 H 1.08000 * 119.99532 * 23.84583 * 12 10 8 14 14 C 1.38886 * 120.00174 * 203.85596 * 12 10 8 15 15 N 1.31464 * 120.00143 * 10.17071 * 14 12 10 16 16 Si 1.86806 * 120.00033 * 190.17604 * 14 12 10 17 17 H 1.48498 * 109.46923 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47025 * 119.99468 * 16 14 12 19 19 H 1.48501 * 109.46972 * 239.99939 * 16 14 12 20 20 C 1.38122 * 119.97009 * 180.28400 * 2 1 3 21 21 H 1.09005 * 109.46861 * 269.72149 * 1 2 3 22 22 H 1.09002 * 109.47355 * 29.72031 * 1 2 3 23 23 H 1.09002 * 109.47255 * 149.72078 * 1 2 3 24 24 H 1.07999 * 119.94242 * 0.02566 * 3 2 1 25 25 H 1.08004 * 119.97284 * 180.25507 * 4 3 2 26 26 H 1.07995 * 120.02482 * 179.76486 * 5 4 3 27 27 H 1.08998 * 109.47287 * 85.22151 * 11 10 8 28 28 H 1.09001 * 109.46841 * 205.21413 * 11 10 8 29 29 H 1.08999 * 109.47549 * 325.20911 * 11 10 8 30 30 H 0.96994 * 119.99934 * 179.97438 * 15 14 12 31 31 H 1.08001 * 120.02896 * 359.94366 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 0.0049 5 6 4.2752 0.0070 -0.0010 6 6 3.5845 -1.1959 -0.0064 7 8 4.2658 -2.3720 -0.0127 8 6 4.8350 -2.7553 1.1464 9 8 4.6591 -2.1010 2.1552 10 7 5.5994 -3.8645 1.1875 11 6 5.8118 -4.6531 -0.0288 12 6 6.1786 -4.2551 2.3680 13 1 5.7494 -3.9440 3.3089 14 6 7.3171 -5.0504 2.3532 15 7 7.9551 -5.2641 1.2237 16 14 7.9419 -5.8167 3.9381 17 1 7.0528 -5.4250 5.0613 18 1 7.9484 -7.2956 3.8040 19 1 9.3212 -5.3381 4.2092 20 6 2.1970 -1.1965 -0.0059 21 1 -0.3633 -0.0050 1.0277 22 1 -0.3634 0.8925 -0.5095 23 1 -0.3634 -0.8875 -0.5182 24 1 1.6565 2.1325 0.0004 25 1 4.1176 2.1382 0.0090 26 1 5.3551 0.0102 -0.0010 27 1 6.6429 -4.2319 -0.5945 28 1 6.0419 -5.6835 0.2419 29 1 4.9087 -4.6307 -0.6387 30 1 8.7504 -5.8192 1.2135 31 1 1.6570 -2.1318 -0.0096 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258996582.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:20 Heat of formation + Delta-G solvation = -38.390799 kcal Electronic energy + Delta-G solvation = -16181.367799 eV Core-core repulsion = 13428.697564 eV Total energy + Delta-G solvation = -2752.670235 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.28381 -38.41315 -36.30353 -34.57383 -32.41452 -31.64732 -29.87750 -26.77939 -26.35446 -24.84039 -22.53041 -21.74449 -19.84180 -17.37314 -17.00020 -16.57512 -15.95138 -15.82433 -14.78651 -14.24921 -13.99668 -13.67356 -13.50670 -12.93433 -12.67208 -12.51246 -12.02403 -11.73966 -11.49678 -11.32518 -11.27119 -11.10034 -10.87950 -10.39076 -10.34751 -10.04301 -9.28505 -9.07257 -8.55930 -8.25843 -7.81408 -6.36771 -3.97928 1.45197 1.58546 3.14222 3.20080 3.26710 3.43620 3.97659 4.06740 4.30166 4.95015 5.03978 5.10339 5.20378 5.35719 5.51323 5.59695 5.63308 5.76371 5.85680 6.06671 6.25141 6.50577 6.59657 6.71254 6.77139 6.88310 6.97585 7.24101 7.49792 7.62482 8.09164 8.37305 9.07934 9.28364 9.93759 10.68307 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.048774 B = 0.005721 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.937735 B = 4893.139292 C = 4928.241431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.079 4.079 3 C -0.133 4.133 4 C -0.104 4.104 5 C -0.128 4.128 6 C 0.137 3.863 7 O -0.324 6.324 8 C 0.583 3.417 9 O -0.595 6.595 10 N -0.425 5.425 11 C 0.119 3.881 12 C -0.299 4.299 13 H 0.102 0.898 14 C 0.030 3.970 15 N -0.882 5.882 16 Si 0.936 3.064 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.280 1.280 20 C -0.127 4.127 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.126 0.874 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.269 0.731 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.011 6.841 -4.697 12.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.079 4.079 3 C -0.151 4.151 4 C -0.122 4.122 5 C -0.147 4.147 6 C 0.094 3.906 7 O -0.237 6.237 8 C 0.338 3.662 9 O -0.487 6.487 10 N -0.151 5.151 11 C -0.025 4.025 12 C -0.426 4.426 13 H 0.119 0.881 14 C -0.173 4.173 15 N -0.521 5.521 16 Si 0.762 3.238 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.146 4.146 21 H 0.088 0.912 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.139 0.861 25 H 0.142 0.858 26 H 0.144 0.856 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.911 6.905 -4.473 12.128 hybrid contribution 0.610 -0.415 0.619 0.963 sum -8.301 6.490 -3.853 11.220 Atomic orbital electron populations 1.20759 0.91044 1.02543 1.02339 1.19682 0.95921 0.92485 0.99831 1.20958 0.94171 0.97280 1.02711 1.20929 0.94117 0.97346 0.99773 1.21385 1.00696 0.91925 1.00688 1.18297 0.89880 0.84101 0.98371 1.84222 1.65481 1.36935 1.37092 1.18528 0.83712 0.83043 0.80891 1.90832 1.67553 1.56508 1.33766 1.42482 1.43617 1.18246 1.10785 1.21489 0.97635 0.97793 0.85567 1.19693 1.08512 1.29960 0.84439 0.88053 1.25401 0.94957 0.98111 0.98845 1.70053 1.18323 1.37989 1.25723 0.85717 0.78672 0.78435 0.81008 1.19123 1.20497 1.20593 1.21054 0.92754 0.98414 1.02347 0.91166 0.91615 0.91563 0.86110 0.85763 0.85645 0.93121 0.90041 0.95176 0.92121 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 2 C -0.08 -1.14 5.88 -104.64 -0.62 -1.75 16 3 C -0.13 -1.81 9.70 -39.56 -0.38 -2.20 16 4 C -0.10 -1.54 10.04 -39.60 -0.40 -1.94 16 5 C -0.13 -2.38 9.66 -39.43 -0.38 -2.76 16 6 C 0.14 2.79 5.11 -39.22 -0.20 2.59 16 7 O -0.32 -7.54 8.94 -24.74 -0.22 -7.76 16 8 C 0.58 15.62 8.19 54.05 0.44 16.06 16 9 O -0.59 -17.36 15.68 -19.28 -0.30 -17.66 16 10 N -0.43 -11.58 3.02 -127.65 -0.39 -11.96 16 11 C 0.12 2.85 8.66 59.85 0.52 3.36 16 12 C -0.30 -8.48 9.27 -14.92 -0.14 -8.62 16 13 H 0.10 2.97 7.43 -52.49 -0.39 2.58 16 14 C 0.03 0.80 5.10 -17.47 -0.09 0.71 16 15 N -0.88 -23.65 10.66 55.49 0.59 -23.06 16 16 Si 0.94 20.69 29.57 -169.99 -5.03 15.66 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.13 -2.21 9.64 -39.43 -0.38 -2.59 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 23 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 24 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 25 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 26 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 27 H 0.05 1.24 7.87 -51.93 -0.41 0.83 16 28 H 0.08 2.00 6.64 -51.93 -0.34 1.65 16 29 H 0.03 0.64 7.53 -51.93 -0.39 0.25 16 30 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 274.76 15.07 4.14 4.14 Total: -1.00 -31.55 274.76 -6.09 -37.64 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -3.62 Total: 0.94 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.26 Total: 2.07 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.21 Total: -35.02 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.52 Total: -25.42 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.55 -6.09 -37.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258996582.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.748 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds