Wall clock time and date at job start Mon Mar 30 2020 03:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35327 * 127.04507 * 2 1 4 4 N 1.30711 * 107.55801 * 179.97438 * 3 2 1 5 5 N 1.28574 * 109.99026 * 359.75145 * 4 3 2 6 6 C 1.31422 * 109.56389 * 0.40956 * 5 4 3 7 7 C 1.48035 * 126.51249 * 179.85795 * 6 5 4 8 8 N 1.30892 * 126.42693 * 179.37367 * 7 6 5 9 9 O 1.21291 * 110.07202 * 180.26353 * 8 7 6 10 10 C 1.33683 * 110.05194 * 0.02562 * 9 8 7 11 11 C 1.50697 * 126.41980 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.47066 * 270.02102 * 11 10 9 13 13 H 1.07996 * 119.99562 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99967 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00332 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99861 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47301 * 89.99678 * 16 14 12 18 18 H 1.48492 * 109.46932 * 209.99846 * 16 14 12 19 19 H 1.48504 * 109.46794 * 329.99878 * 16 14 12 20 20 N 1.30940 * 107.16109 * 359.97438 * 10 9 8 21 21 H 1.09004 * 109.46702 * 270.00416 * 1 2 3 22 22 H 1.09004 * 109.46874 * 29.99541 * 1 2 3 23 23 H 1.08990 * 109.47385 * 150.00240 * 1 2 3 24 24 H 1.07997 * 126.22012 * 359.96490 * 3 2 1 25 25 H 1.09002 * 109.47533 * 30.01528 * 11 10 9 26 26 H 1.09000 * 109.47575 * 150.02257 * 11 10 9 27 27 H 0.96997 * 120.00267 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2802 1.0801 0.0000 4 7 3.5125 0.6441 0.0006 5 7 3.5238 -0.6416 0.0061 6 6 2.2894 -1.0926 0.0006 7 6 1.8703 -2.5124 0.0012 8 7 0.6402 -2.9597 0.0072 9 8 0.6383 -4.1726 0.0111 10 6 1.8934 -4.6329 0.0085 11 6 2.3158 -6.0794 0.0123 12 6 2.4610 -6.5566 1.4344 13 1 2.2671 -5.8799 2.2534 14 6 2.8422 -7.8568 1.6897 15 7 3.0788 -8.6807 0.6924 16 14 3.0229 -8.4480 3.4525 17 1 1.7269 -8.9976 3.9256 18 1 4.0620 -9.5069 3.5154 19 1 3.4232 -7.3095 4.3179 20 7 2.6869 -3.5913 0.0020 21 1 -0.3633 0.0001 1.0277 22 1 -0.3633 0.8901 -0.5138 23 1 -0.3633 -0.8899 -0.5137 24 1 1.9693 2.1144 -0.0005 25 1 1.5618 -6.6795 -0.4971 26 1 3.2704 -6.1806 -0.5041 27 1 3.3466 -9.5955 0.8720 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259480410.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:46 Heat of formation + Delta-G solvation = 128.348657 kcal Electronic energy + Delta-G solvation = -15646.365493 eV Core-core repulsion = 12829.678032 eV Total energy + Delta-G solvation = -2816.687462 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.081 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.63579 -44.23236 -37.13340 -36.35736 -35.74586 -33.99711 -31.81420 -30.43423 -28.75092 -26.26051 -25.96567 -24.00371 -23.21972 -21.91020 -19.45867 -18.97463 -18.36727 -18.04103 -17.46948 -16.78999 -16.48342 -16.02742 -15.20011 -14.50640 -14.47465 -14.23849 -13.76756 -13.33345 -13.24559 -12.93122 -12.86033 -12.62089 -12.26459 -12.09043 -11.99421 -11.64858 -11.37445 -11.18576 -10.66524 -10.30014 -8.30870 -6.43993 -0.40449 0.44060 1.05193 1.25396 1.44380 1.46197 1.56333 1.76352 1.79969 2.14100 2.39975 2.76280 3.06364 3.61766 3.71097 3.74713 4.15663 4.24652 4.45126 4.55183 4.67740 4.71688 4.77791 5.09102 5.17294 5.58876 5.65481 5.86343 6.60121 6.92579 7.24936 7.38844 8.79905 Molecular weight = 235.08amu Principal moments of inertia in cm(-1) A = 0.043301 B = 0.005518 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.485378 B = 5072.977442 C = 5255.430641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.455 5.455 3 C 0.200 3.800 4 N -0.337 5.337 5 N -0.276 5.276 6 C 0.223 3.777 7 C 0.237 3.763 8 N -0.377 5.377 9 O 0.076 5.924 10 C 0.250 3.750 11 C 0.108 3.892 12 C -0.546 4.546 13 H 0.054 0.946 14 C 0.024 3.976 15 N -0.914 5.914 16 Si 0.969 3.031 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.274 1.274 20 N -0.498 5.498 21 H 0.099 0.901 22 H 0.146 0.854 23 H 0.082 0.918 24 H 0.291 0.709 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.229 16.184 -1.306 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.146 5.146 3 C -0.086 4.086 4 N -0.178 5.178 5 N -0.121 5.121 6 C -0.044 4.044 7 C -0.035 4.035 8 N -0.090 5.090 9 O 0.018 5.982 10 C 0.032 3.968 11 C 0.069 3.931 12 C -0.584 4.584 13 H 0.072 0.928 14 C -0.177 4.177 15 N -0.552 5.552 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.199 1.199 20 N -0.232 5.232 21 H 0.117 0.883 22 H 0.164 0.836 23 H 0.101 0.899 24 H 0.306 0.694 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.041 16.738 -1.367 18.620 hybrid contribution -1.016 -0.794 0.712 1.473 sum -9.057 15.944 -0.654 18.348 Atomic orbital electron populations 1.22677 0.71585 1.07400 1.06173 1.46568 1.11114 1.04609 1.52286 1.27691 0.85414 0.96315 0.99226 1.74312 1.20780 1.01854 1.20904 1.74656 1.16833 1.04337 1.16307 1.20461 0.87952 0.85531 1.10411 1.22048 0.85893 0.92199 1.03370 1.74750 1.19767 0.91946 1.22511 1.85243 1.32333 1.14674 1.65943 1.29807 0.77799 1.00084 0.89117 1.18048 0.98664 0.77053 0.99311 1.21011 1.49460 0.97168 0.90778 0.92759 1.25691 0.93827 0.96190 1.01997 1.69990 1.45559 1.06665 1.32959 0.85389 0.78540 0.77983 0.78828 1.19038 1.20132 1.19909 1.72175 1.31435 0.96888 1.22688 0.88270 0.83618 0.89887 0.69390 0.91656 0.92401 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 10.85 127.77 1.39 2.20 15 2 N -0.45 -10.46 3.18 -543.35 -1.73 -12.18 15 3 C 0.20 3.86 12.73 180.11 2.29 6.15 15 4 N -0.34 -10.62 12.20 -59.99 -0.73 -11.35 15 5 N -0.28 -10.88 12.26 -51.00 -0.63 -11.50 15 6 C 0.22 7.92 7.99 136.45 1.09 9.01 15 7 C 0.24 9.52 8.03 137.11 1.10 10.62 15 8 N -0.38 -13.87 10.44 -58.99 -0.62 -14.49 15 9 O 0.08 3.02 11.29 74.48 0.84 3.86 15 10 C 0.25 11.17 7.68 88.35 0.68 11.85 15 11 C 0.11 5.26 5.60 29.10 0.16 5.43 15 12 C -0.55 -29.15 9.09 25.60 0.23 -28.92 15 13 H 0.05 2.92 7.74 -2.91 -0.02 2.90 15 14 C 0.02 1.28 5.46 84.65 0.46 1.74 15 15 N -0.91 -50.24 13.29 21.45 0.28 -49.95 15 16 Si 0.97 41.95 29.54 68.60 2.03 43.97 15 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 18 H -0.28 -11.62 7.11 99.48 0.71 -10.91 15 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 20 N -0.50 -23.02 11.58 -302.45 -3.50 -26.53 15 21 H 0.10 1.11 8.14 -2.38 -0.02 1.09 15 22 H 0.15 0.47 8.14 -2.38 -0.02 0.46 15 23 H 0.08 1.48 6.67 -2.39 -0.02 1.46 15 24 H 0.29 1.26 8.06 -2.91 -0.02 1.23 15 25 H 0.07 3.10 8.14 -2.39 -0.02 3.08 15 26 H 0.06 2.99 8.14 -2.39 -0.02 2.97 15 27 H 0.27 14.07 8.31 -92.71 -0.77 13.30 15 Total: -1.00 -70.52 255.88 4.57 -65.95 By element: Atomic # 1 Polarization: -7.08 SS G_CDS: 1.21 Total: -5.87 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 7.41 Total: 18.09 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -6.92 Total: -126.00 kcal Atomic # 8 Polarization: 3.02 SS G_CDS: 0.84 Total: 3.86 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -70.52 4.57 -65.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259480410.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.299 kcal (2) G-P(sol) polarization free energy of solvation -70.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds