Wall clock time and date at job start Mon Mar 30 2020 03:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38256 * 119.92387 * 279.99415 * 13 10 9 15 15 C 1.38238 * 120.13949 * 179.97438 * 14 13 10 16 16 C 1.38545 * 120.03111 * 0.02562 * 15 14 13 17 17 C 1.39273 * 119.82672 * 359.97363 * 16 15 14 18 18 C 1.38231 * 119.92935 * 99.72576 * 13 10 9 19 19 O 1.36501 * 108.63917 * 179.97438 * 17 16 15 20 20 C 1.43990 * 105.48623 * 342.72477 * 19 17 16 21 21 O 1.36495 * 131.53335 * 179.97438 * 16 15 14 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 26 26 H 1.00899 * 111.00294 * 183.95639 * 12 10 9 27 27 H 1.07997 * 119.92971 * 359.96024 * 14 13 10 28 28 H 1.08002 * 119.98424 * 180.02562 * 15 14 13 29 29 H 1.08000 * 119.98734 * 359.97438 * 18 13 10 30 30 H 1.08991 * 110.57562 * 268.55437 * 20 19 17 31 31 H 1.09002 * 110.57155 * 145.67813 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 7 3.0082 -3.6596 1.2448 13 6 1.4956 -4.9631 -0.1402 14 6 0.8944 -5.5264 0.9701 15 6 0.2054 -6.7194 0.8561 16 6 0.1162 -7.3540 -0.3723 17 6 0.7218 -6.7865 -1.4907 18 6 1.4061 -5.5878 -1.3700 19 8 0.4936 -7.5940 -2.5673 20 6 0.0929 -8.8632 -2.0178 21 8 -0.4919 -8.5167 -0.7483 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.3958 -3.7609 2.0403 26 1 3.7159 -4.3788 1.2393 27 1 0.9635 -5.0335 1.9285 28 1 -0.2636 -7.1570 1.7250 29 1 1.8726 -5.1431 -2.2366 30 1 0.9586 -9.5102 -1.8772 31 1 -0.6448 -9.3432 -2.6609 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259563049.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:39 Heat of formation + Delta-G solvation = -40.267502 kcal Electronic energy + Delta-G solvation = -16052.281832 eV Core-core repulsion = 13299.530217 eV Total energy + Delta-G solvation = -2752.751615 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.04609 -38.41984 -36.20545 -34.84390 -32.38251 -30.53073 -29.23524 -28.21491 -25.81531 -24.32899 -22.78866 -22.30242 -20.09316 -17.80720 -17.37768 -17.08289 -16.55555 -15.85346 -15.17711 -14.44215 -14.36140 -14.13940 -13.86967 -13.70996 -12.94947 -12.91661 -12.58685 -12.35733 -11.90034 -11.22244 -11.09842 -10.94241 -10.70388 -10.44400 -10.21398 -9.51838 -9.07366 -8.61754 -8.29770 -8.06421 -7.77019 -5.91167 -3.90194 1.32647 1.41267 2.82758 3.38031 3.45447 3.48669 3.51092 3.77118 4.54969 4.60932 4.63614 4.81477 5.18358 5.24451 5.30067 5.33276 5.44332 5.51018 5.68656 6.10094 6.21242 6.27088 6.42354 6.52803 6.67234 6.87630 7.25815 7.53327 7.69022 7.95637 8.08540 8.14879 8.51677 9.16342 9.72009 11.20609 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.046645 B = 0.005374 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.139968 B = 5208.766365 C = 5339.171654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.050 3.950 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.494 4.494 8 H 0.064 0.936 9 C 0.036 3.964 10 C 0.134 3.866 11 H 0.081 0.919 12 N -0.819 5.819 13 C -0.085 4.085 14 C -0.111 4.111 15 C -0.096 4.096 16 C 0.011 3.989 17 C 0.030 3.970 18 C -0.095 4.095 19 O -0.312 6.312 20 C 0.214 3.786 21 O -0.314 6.314 22 H 0.258 0.742 23 H 0.018 0.982 24 H 0.021 0.979 25 H 0.335 0.665 26 H 0.323 0.677 27 H 0.135 0.865 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.079 0.921 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 -16.442 -0.673 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.149 4.149 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.533 4.533 8 H 0.082 0.918 9 C -0.002 4.002 10 C 0.023 3.977 11 H 0.099 0.901 12 N -0.346 5.346 13 C -0.087 4.087 14 C -0.130 4.130 15 C -0.114 4.114 16 C -0.033 4.033 17 C -0.014 4.014 18 C -0.114 4.114 19 O -0.228 6.228 20 C 0.102 3.898 21 O -0.230 6.230 22 H 0.067 0.933 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.148 0.852 26 H 0.134 0.866 27 H 0.153 0.847 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.096 0.904 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.659 -15.662 -1.008 15.781 hybrid contribution -0.204 -0.335 -0.058 0.397 sum 1.455 -15.997 -1.066 16.098 Atomic orbital electron populations 1.69985 1.06036 1.26291 1.51949 1.25028 0.94799 0.99221 0.95893 0.86523 0.80206 0.83884 0.77286 1.19699 1.21359 1.21273 1.21188 0.93435 0.89964 1.48673 0.91813 1.19168 0.92856 0.90616 0.97527 1.20833 0.94816 0.89537 0.92545 0.90087 1.58865 1.17751 1.54143 1.03883 1.21259 0.97847 0.97896 0.91726 1.20767 0.98226 0.94399 0.99567 1.20003 1.01542 0.96081 0.93798 1.19715 0.98962 0.89314 0.95337 1.19815 1.01181 0.95788 0.84587 1.20047 0.99988 0.92518 0.98847 1.87345 1.84311 1.22590 1.28562 1.25529 0.97172 0.86307 0.80831 1.87316 1.60297 1.38564 1.36870 0.93275 0.96340 0.96056 0.85171 0.86590 0.84688 0.85144 0.84742 0.90359 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.49 -13.71 8.84 -34.44 -0.30 -14.01 16 8 H 0.06 1.76 7.74 -52.49 -0.41 1.36 16 9 C 0.04 0.89 4.60 -27.88 -0.13 0.76 16 10 C 0.13 2.60 2.93 -68.87 -0.20 2.40 16 11 H 0.08 1.59 8.00 -51.92 -0.42 1.17 16 12 N -0.82 -14.26 8.77 -5.65 -0.05 -14.31 16 13 C -0.08 -1.44 4.95 -104.62 -0.52 -1.96 16 14 C -0.11 -1.70 9.29 -39.57 -0.37 -2.07 16 15 C -0.10 -1.39 10.06 -39.47 -0.40 -1.78 16 16 C 0.01 0.16 7.15 -39.08 -0.28 -0.12 16 17 C 0.03 0.49 7.15 -39.08 -0.28 0.21 16 18 C -0.09 -1.58 9.68 -39.47 -0.38 -1.96 16 19 O -0.31 -4.62 11.40 -45.69 -0.52 -5.14 16 20 C 0.21 2.34 8.89 101.05 0.90 3.24 16 21 O -0.31 -4.45 11.40 -45.67 -0.52 -4.97 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.33 5.47 7.34 -39.29 -0.29 5.19 16 26 H 0.32 4.68 9.06 -39.29 -0.36 4.32 16 27 H 0.14 1.88 6.65 -52.49 -0.35 1.53 16 28 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.13 2.11 8.04 -52.49 -0.42 1.68 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.13 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 270.48 15.07 4.08 4.08 Total: -1.00 -31.95 270.48 -6.84 -38.79 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.49 Total: 5.05 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.06 Total: -13.95 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.69 Total: -40.75 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -1.04 Total: -10.12 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.95 -6.84 -38.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259563049.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.477 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds