Wall clock time and date at job start Mon Mar 30 2020 03:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38256 * 119.92387 * 279.99415 * 13 10 9 15 15 C 1.38238 * 120.13949 * 179.97438 * 14 13 10 16 16 C 1.38545 * 120.03111 * 0.02562 * 15 14 13 17 17 C 1.39273 * 119.82672 * 359.97363 * 16 15 14 18 18 C 1.38231 * 119.92935 * 99.72576 * 13 10 9 19 19 O 1.36501 * 108.63917 * 179.97438 * 17 16 15 20 20 C 1.43990 * 105.48623 * 342.72477 * 19 17 16 21 21 O 1.36495 * 131.53335 * 179.97438 * 16 15 14 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 26 26 H 1.00899 * 111.00294 * 183.95639 * 12 10 9 27 27 H 1.07997 * 119.92971 * 359.96024 * 14 13 10 28 28 H 1.08002 * 119.98424 * 180.02562 * 15 14 13 29 29 H 1.08000 * 119.98734 * 359.97438 * 18 13 10 30 30 H 1.08991 * 110.57562 * 268.55437 * 20 19 17 31 31 H 1.09002 * 110.57155 * 145.67813 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 7 3.0082 -3.6596 1.2448 13 6 1.4956 -4.9631 -0.1402 14 6 0.8944 -5.5264 0.9701 15 6 0.2054 -6.7194 0.8561 16 6 0.1162 -7.3540 -0.3723 17 6 0.7218 -6.7865 -1.4907 18 6 1.4061 -5.5878 -1.3700 19 8 0.4936 -7.5940 -2.5673 20 6 0.0929 -8.8632 -2.0178 21 8 -0.4919 -8.5167 -0.7483 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.3958 -3.7609 2.0403 26 1 3.7159 -4.3788 1.2393 27 1 0.9635 -5.0335 1.9285 28 1 -0.2636 -7.1570 1.7250 29 1 1.8726 -5.1431 -2.2366 30 1 0.9586 -9.5102 -1.8772 31 1 -0.6448 -9.3432 -2.6609 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259563049.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:39 Heat of formation + Delta-G solvation = -62.781729 kcal Electronic energy + Delta-G solvation = -16053.258122 eV Core-core repulsion = 13299.530217 eV Total energy + Delta-G solvation = -2753.727905 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.13923 -39.71428 -37.29802 -36.38814 -34.41626 -31.74712 -30.43526 -30.13085 -26.86709 -26.01398 -24.06690 -23.79179 -21.61509 -18.91379 -18.67143 -18.29975 -18.22951 -17.20826 -16.70258 -16.30139 -15.50452 -15.48219 -15.20233 -14.86314 -14.39397 -14.23095 -14.00704 -13.76672 -13.45280 -13.07651 -12.77012 -12.48796 -12.35843 -12.01306 -11.92683 -11.25351 -11.16247 -10.49911 -9.85661 -9.47507 -8.99142 -8.09716 -6.15800 0.09606 0.19975 1.44481 1.45526 1.58948 1.76780 2.46879 2.51859 2.55194 3.24065 3.46739 3.80104 3.85938 3.94462 4.06905 4.10966 4.23377 4.27561 4.52509 4.62974 4.95831 5.00460 5.04310 5.20301 5.35900 5.46802 5.50511 5.74152 5.89734 6.11042 6.31933 6.52928 6.86827 6.99152 7.51047 9.02343 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.046645 B = 0.005374 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.139968 B = 5208.766365 C = 5339.171654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.006 4.006 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.042 3.958 10 C 0.151 3.849 11 H 0.075 0.925 12 N -0.826 5.826 13 C -0.099 4.099 14 C -0.110 4.110 15 C -0.093 4.093 16 C 0.009 3.991 17 C 0.019 3.981 18 C -0.108 4.108 19 O -0.327 6.327 20 C 0.204 3.796 21 O -0.322 6.322 22 H 0.259 0.741 23 H -0.003 1.003 24 H -0.010 1.010 25 H 0.341 0.659 26 H 0.343 0.657 27 H 0.148 0.852 28 H 0.159 0.841 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -17.550 -0.288 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.202 4.202 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.005 3.995 10 C 0.039 3.961 11 H 0.093 0.907 12 N -0.355 5.355 13 C -0.102 4.102 14 C -0.128 4.128 15 C -0.112 4.112 16 C -0.036 4.036 17 C -0.025 4.025 18 C -0.127 4.127 19 O -0.244 6.244 20 C 0.094 3.906 21 O -0.239 6.239 22 H 0.068 0.932 23 H 0.015 0.985 24 H 0.008 0.992 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.166 0.834 28 H 0.177 0.823 29 H 0.152 0.848 30 H 0.124 0.876 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.306 -16.800 -0.624 16.968 hybrid contribution -0.435 -0.118 -0.214 0.499 sum 1.870 -16.918 -0.838 17.041 Atomic orbital electron populations 1.70115 1.07678 1.27216 1.53244 1.25900 0.95621 1.03034 0.95678 0.85455 0.79206 0.79378 0.77300 1.18698 1.20986 1.20843 1.21544 0.93568 0.91296 1.47796 0.91862 1.18977 0.93274 0.92341 0.94895 1.20311 0.93659 0.88780 0.93355 0.90674 1.58734 1.18173 1.55407 1.03218 1.20970 0.99105 0.97377 0.92731 1.20933 0.97667 0.94671 0.99524 1.20283 1.00861 0.95481 0.94561 1.19949 0.98441 0.89729 0.95441 1.19885 1.01285 0.95865 0.85450 1.20088 1.00627 0.93164 0.98807 1.87317 1.84412 1.23926 1.28756 1.26139 0.99343 0.85062 0.80103 1.87299 1.60544 1.37856 1.38177 0.93226 0.98454 0.99219 0.84450 0.84370 0.83406 0.82339 0.84771 0.87627 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 3 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.50 -28.27 8.84 25.60 0.23 -28.04 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.04 2.18 4.60 29.85 0.14 2.32 16 10 C 0.15 5.89 2.93 44.17 0.13 6.02 16 11 H 0.08 2.98 8.00 -2.38 -0.02 2.96 16 12 N -0.83 -28.09 8.77 -171.80 -1.51 -29.59 16 13 C -0.10 -3.38 4.95 -19.86 -0.10 -3.47 16 14 C -0.11 -3.25 9.29 22.27 0.21 -3.04 16 15 C -0.09 -2.54 10.06 22.34 0.22 -2.31 16 16 C 0.01 0.25 7.15 22.59 0.16 0.42 16 17 C 0.02 0.62 7.15 22.59 0.16 0.78 16 18 C -0.11 -3.60 9.68 22.34 0.22 -3.38 16 19 O -0.33 -9.27 11.40 -76.07 -0.87 -10.14 16 20 C 0.20 3.94 8.89 113.37 1.01 4.95 16 21 O -0.32 -8.39 11.40 -76.00 -0.87 -9.26 16 22 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 23 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H 0.34 10.84 7.34 -89.69 -0.66 10.19 16 26 H 0.34 9.43 9.06 -89.69 -0.81 8.62 16 27 H 0.15 3.91 6.65 -2.91 -0.02 3.89 16 28 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 29 H 0.13 4.33 8.04 -2.91 -0.02 4.30 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.16 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -68.78 270.48 1.60 -67.18 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -0.31 Total: 17.73 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 2.84 Total: -25.67 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -1.22 Total: -87.00 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -1.73 Total: -19.40 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -68.78 1.60 -67.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259563049.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.398 kcal (2) G-P(sol) polarization free energy of solvation -68.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds