Wall clock time and date at job start Mon Mar 30 2020 03:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34512 * 125.79375 * 2 1 4 4 C 1.41379 * 106.84574 * 180.02562 * 3 2 1 5 5 C 1.34513 * 106.84037 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.79233 * 180.02562 * 5 4 3 7 7 H 1.08997 * 110.28284 * 21.96750 * 6 5 4 8 8 N 1.46759 * 110.24687 * 143.95126 * 6 5 4 9 9 C 1.34421 * 111.29917 * 136.01892 * 8 6 5 10 10 O 1.21278 * 124.94016 * 179.59176 * 9 8 6 11 11 C 1.51276 * 110.11734 * 359.58613 * 9 8 6 12 12 C 1.54479 * 110.24250 * 259.99971 * 6 5 4 13 13 H 1.08997 * 110.97082 * 333.73780 * 12 6 5 14 14 C 1.50702 * 110.96971 * 97.46190 * 12 6 5 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 12 6 16 16 C 1.37884 * 119.99942 * 179.71854 * 14 12 6 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 O 1.34308 * 108.42002 * 0.26187 * 5 4 3 23 23 H 1.09004 * 109.47763 * 89.99759 * 1 2 3 24 24 H 1.09000 * 109.47295 * 209.99980 * 1 2 3 25 25 H 1.09003 * 109.47032 * 329.99746 * 1 2 3 26 26 H 1.08011 * 126.57773 * 0.05848 * 3 2 1 27 27 H 1.07997 * 126.58116 * 180.02562 * 4 3 2 28 28 H 0.96996 * 124.35069 * 315.99280 * 8 6 5 29 29 H 1.08993 * 110.48955 * 225.07272 * 11 9 8 30 30 H 1.09011 * 110.48576 * 102.42739 * 11 9 8 31 31 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7705 -1.6380 -0.0019 7 1 5.6510 -1.1221 0.3811 8 7 4.4872 -2.8289 0.8076 9 6 4.9009 -3.9488 0.1898 10 8 4.7957 -5.0699 0.6403 11 6 5.5165 -3.6074 -1.1492 12 6 5.0380 -2.1639 -1.4295 13 1 4.1237 -2.1638 -2.0230 14 6 6.1175 -1.3598 -2.1071 15 1 6.5880 -0.5396 -1.5852 16 6 6.5090 -1.6753 -3.3910 17 7 5.9364 -2.6743 -4.0263 18 14 7.8525 -0.6834 -4.2280 19 1 9.1055 -0.7807 -3.4368 20 1 8.0857 -1.2192 -5.5932 21 1 7.4341 0.7385 -4.3196 22 8 2.2923 -1.0895 -0.0073 23 1 -0.3635 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.9665 2.1205 0.0009 27 1 4.5212 1.2432 -0.0004 28 1 4.0572 -2.8103 1.6768 29 1 5.1530 -4.2863 -1.9205 30 1 6.6043 -3.6438 -1.0893 31 1 6.2116 -2.8960 -4.9297 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259823621.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:14 Heat of formation + Delta-G solvation = -51.876605 kcal Electronic energy + Delta-G solvation = -16482.144367 eV Core-core repulsion = 13728.889343 eV Total energy + Delta-G solvation = -2753.255023 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.50898 -41.08943 -37.73163 -34.91370 -34.03548 -32.89933 -31.84475 -29.52127 -27.39866 -25.41076 -22.69363 -22.31515 -21.44933 -20.97081 -18.90374 -18.43197 -17.04651 -16.99998 -16.73679 -16.43708 -15.70810 -15.00941 -14.68056 -14.32894 -14.15603 -13.82277 -13.73259 -13.69509 -13.62892 -12.92766 -12.72164 -12.66734 -12.49944 -12.24394 -11.66906 -11.43207 -10.83520 -10.72163 -10.47904 -10.25313 -9.09728 -8.15848 -6.27827 0.79995 1.49888 1.50041 1.56336 1.57556 1.73884 2.03366 2.39240 2.49768 3.17040 3.68881 3.76418 4.09803 4.14562 4.23085 4.40070 4.59108 4.65762 4.73914 4.78649 4.90409 4.96935 5.14365 5.29810 5.38191 5.54539 5.72140 5.77649 5.83330 5.94392 6.17487 6.33736 6.79788 7.25762 7.42125 8.94133 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.009480 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.210523 B = 2952.786117 C = 3918.458868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.036 4.036 3 C -0.218 4.218 4 C -0.199 4.199 5 C -0.030 4.030 6 C 0.221 3.779 7 H 0.124 0.876 8 N -0.712 5.712 9 C 0.520 3.480 10 O -0.588 6.588 11 C -0.129 4.129 12 C 0.058 3.942 13 H 0.015 0.985 14 C -0.527 4.527 15 H 0.077 0.923 16 C 0.018 3.982 17 N -0.918 5.918 18 Si 0.959 3.041 19 H -0.266 1.266 20 H -0.292 1.292 21 H -0.268 1.268 22 O -0.194 6.194 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.174 0.826 27 H 0.162 0.838 28 H 0.412 0.588 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 9.046 7.275 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 C -0.237 4.237 4 C -0.219 4.219 5 C -0.080 4.080 6 C 0.117 3.883 7 H 0.141 0.859 8 N -0.365 5.365 9 C 0.309 3.691 10 O -0.470 6.470 11 C -0.170 4.170 12 C 0.039 3.961 13 H 0.033 0.967 14 C -0.565 4.565 15 H 0.095 0.905 16 C -0.182 4.182 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.190 1.190 20 H -0.217 1.217 21 H -0.193 1.193 22 O -0.091 6.091 23 H 0.105 0.895 24 H 0.096 0.904 25 H 0.133 0.867 26 H 0.191 0.809 27 H 0.179 0.821 28 H 0.251 0.749 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.590 8.081 7.228 12.688 hybrid contribution 0.564 0.268 -0.515 0.809 sum -6.027 8.349 6.713 12.292 Atomic orbital electron populations 1.20455 0.82534 1.05220 1.04314 1.23316 0.95714 0.83959 1.05580 1.21870 0.91937 1.00433 1.09435 1.21802 0.99504 0.93222 1.07349 1.22626 0.82705 0.95161 1.07558 1.20589 0.91036 0.83183 0.93500 0.85876 1.46182 1.61298 1.07189 1.21875 1.21482 0.76259 0.83462 0.87879 1.90614 1.60136 1.23764 1.72459 1.22356 1.01566 1.00846 0.92192 1.19558 0.96485 0.90808 0.89283 0.96663 1.21233 1.19704 1.16030 0.99557 0.90482 1.25763 0.98606 0.95904 0.97913 1.70082 1.43052 1.29462 1.13046 0.85589 0.79693 0.79008 0.77290 1.19033 1.21746 1.19347 1.83958 1.16716 1.36436 1.72016 0.89516 0.90445 0.86721 0.80863 0.82070 0.74889 0.91037 0.88791 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.42 71.23 0.74 -0.55 16 2 C -0.04 -1.04 7.32 24.83 0.18 -0.86 16 3 C -0.22 -6.05 10.81 22.19 0.24 -5.81 16 4 C -0.20 -6.39 10.81 22.19 0.24 -6.15 16 5 C -0.03 -1.10 6.12 24.83 0.15 -0.95 16 6 C 0.22 8.42 3.53 44.70 0.16 8.58 16 7 H 0.12 4.24 7.74 -2.39 -0.02 4.23 16 8 N -0.71 -26.46 5.85 -442.99 -2.59 -29.05 16 9 C 0.52 22.99 8.43 87.90 0.74 23.73 16 10 O -0.59 -28.93 18.03 -3.02 -0.05 -28.99 16 11 C -0.13 -6.06 5.80 30.59 0.18 -5.89 16 12 C 0.06 2.72 2.46 -10.48 -0.03 2.69 16 13 H 0.02 0.82 7.90 -2.39 -0.02 0.80 16 14 C -0.53 -26.00 8.39 25.60 0.21 -25.78 16 15 H 0.08 3.52 7.60 -2.91 -0.02 3.50 16 16 C 0.02 0.95 5.37 84.66 0.45 1.40 16 17 N -0.92 -50.89 12.83 21.45 0.28 -50.62 16 18 Si 0.96 40.52 29.54 68.60 2.03 42.55 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 20 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 O -0.19 -7.09 10.63 -2.59 -0.03 -7.12 16 23 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.17 3.58 8.06 -2.91 -0.02 3.55 16 27 H 0.16 4.57 8.06 -2.91 -0.02 4.54 16 28 H 0.41 13.20 8.96 -92.71 -0.83 12.37 16 29 H 0.07 3.67 8.14 -2.39 -0.02 3.65 16 30 H 0.09 4.41 7.89 -2.38 -0.02 4.39 16 31 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -63.54 274.76 3.22 -60.32 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.32 Total: 22.47 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 3.28 Total: -9.58 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -2.32 Total: -79.67 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.08 Total: -36.10 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -63.54 3.22 -60.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823621.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.447 kcal (2) G-P(sol) polarization free energy of solvation -63.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds