Wall clock time and date at job start Mon Mar 30 2020 04:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47449 * 2 1 4 4 N 1.30747 * 127.64030 * 89.97355 * 3 2 1 5 5 O 1.21395 * 112.74730 * 179.97438 * 4 3 2 6 6 C 1.32224 * 113.03108 * 0.10303 * 5 4 3 7 7 C 1.39217 * 105.70413 * 359.83418 * 6 5 4 8 8 C 1.46164 * 122.32564 * 180.31126 * 7 6 5 9 9 O 1.21322 * 122.54371 * 191.19853 * 8 7 6 10 10 C 1.52386 * 114.88042 * 11.22603 * 8 7 6 11 11 C 1.53200 * 108.40895 * 317.69407 * 10 8 7 12 12 H 1.09004 * 109.18682 * 304.22008 * 11 10 8 13 13 C 1.50698 * 109.18923 * 184.91708 * 11 10 8 14 14 H 1.08000 * 119.99528 * 334.51997 * 13 11 10 15 15 C 1.37877 * 120.00202 * 154.51698 * 13 11 10 16 16 N 1.31516 * 120.00026 * 355.16449 * 15 13 11 17 17 Si 1.86801 * 120.00084 * 175.16472 * 15 13 11 18 18 H 1.48504 * 109.47121 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46955 * 240.00311 * 17 15 13 20 20 H 1.48494 * 109.47184 * 119.99852 * 17 15 13 21 21 C 1.50318 * 131.61660 * 179.79795 * 6 5 4 22 22 H 1.08994 * 109.46962 * 300.00333 * 1 2 3 23 23 H 1.09006 * 109.47080 * 59.99810 * 1 2 3 24 24 H 1.08994 * 109.47468 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47335 * 239.99563 * 2 1 3 26 26 H 1.09000 * 109.47494 * 120.00303 * 2 1 3 27 27 H 1.09004 * 109.63718 * 197.99337 * 10 8 7 28 28 H 1.08988 * 109.72160 * 77.44620 * 10 8 7 29 29 H 0.97006 * 119.99523 * 5.19331 * 16 15 13 30 30 H 1.08995 * 109.51698 * 80.44668 * 21 6 5 31 31 H 1.09003 * 109.51447 * 320.27281 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2981 2.1738 1.0353 5 8 2.6899 3.2796 0.7233 6 6 2.7512 3.4564 -0.5856 7 6 2.3288 2.2552 -1.1483 8 6 2.2628 2.0498 -2.5940 9 8 1.7146 1.0891 -3.0923 10 6 2.9358 3.1340 -3.4269 11 6 2.5813 4.4971 -2.8242 12 1 1.4968 4.5955 -2.7741 13 6 3.1373 5.5873 -3.7036 14 1 3.9943 5.3907 -4.3307 15 6 2.5519 6.8356 -3.7076 16 7 1.4526 7.0486 -3.0177 17 14 3.3202 8.2243 -4.6928 18 1 4.5423 7.7294 -5.3761 19 1 3.6799 9.3388 -3.7798 20 1 2.3488 8.7085 -5.7063 21 6 3.1656 4.6398 -1.4148 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.5761 3.0825 -4.4546 28 1 4.0165 2.9944 -3.4083 29 1 1.0955 6.3505 -2.4467 30 1 4.2532 4.6799 -1.4739 31 1 2.7909 5.5549 -0.9562 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259824888.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:57 Heat of formation + Delta-G solvation = -5.168778 kcal Electronic energy + Delta-G solvation = -16564.480565 eV Core-core repulsion = 13813.250945 eV Total energy + Delta-G solvation = -2751.229620 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.47703 -38.86247 -36.09898 -35.08109 -32.74360 -31.19113 -30.23142 -28.00614 -25.17700 -24.33861 -23.28403 -21.49757 -19.95168 -18.63412 -17.45804 -17.02933 -16.56410 -15.45633 -14.63684 -14.34898 -14.08027 -13.98001 -13.86776 -13.64252 -12.84235 -12.55743 -12.40814 -11.94821 -11.63414 -11.45665 -11.31568 -10.93575 -10.83678 -10.34692 -10.26050 -9.92860 -9.75750 -9.42819 -8.97820 -8.73094 -8.53863 -6.61434 -4.38117 1.29046 1.96200 3.15299 3.19734 3.34325 3.36982 3.49570 4.18881 4.33995 4.51020 4.75300 5.09130 5.22960 5.29322 5.30210 5.40004 5.64598 5.70469 5.80844 5.85179 5.96746 6.08825 6.16283 6.23640 6.26458 6.31661 6.48663 6.93700 7.10706 7.82089 7.93720 8.17788 8.49414 8.58722 9.35106 10.76070 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.039103 B = 0.007094 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.881542 B = 3946.193132 C = 4294.287790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.041 4.041 3 C 0.077 3.923 4 N -0.381 5.381 5 O 0.090 5.910 6 C 0.060 3.940 7 C -0.320 4.320 8 C 0.434 3.566 9 O -0.470 6.470 10 C -0.143 4.143 11 C 0.040 3.960 12 H 0.043 0.957 13 C -0.598 4.598 14 H 0.061 0.939 15 C 0.025 3.975 16 N -0.900 5.900 17 Si 1.075 2.925 18 H -0.287 1.287 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.045 4.045 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.272 0.728 30 H 0.098 0.902 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 -7.660 3.961 8.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 C -0.084 4.084 4 N -0.094 5.094 5 O 0.037 5.963 6 C -0.006 4.006 7 C -0.326 4.326 8 C 0.313 3.687 9 O -0.347 6.347 10 C -0.181 4.181 11 C 0.021 3.979 12 H 0.061 0.939 13 C -0.635 4.635 14 H 0.079 0.921 15 C -0.181 4.181 16 N -0.535 5.535 17 Si 0.902 3.098 18 H -0.212 1.212 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.083 4.083 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.890 -6.712 4.575 8.340 hybrid contribution 0.213 -1.574 -0.072 1.590 sum 2.103 -8.286 4.503 9.663 Atomic orbital electron populations 1.21677 0.93727 1.02170 1.02562 1.19922 0.96677 0.87651 1.03648 1.24264 0.98230 0.98201 0.87694 1.74125 1.19283 0.92519 1.23446 1.84381 1.61700 1.26665 1.23523 1.26559 0.92147 0.98773 0.83127 1.22811 1.16427 0.95649 0.97685 1.22147 0.75276 0.84973 0.86279 1.90460 1.36840 1.30725 1.76678 1.22483 1.01043 0.94435 1.00123 1.18934 0.97807 0.91865 0.89289 0.93881 1.21858 1.18255 0.96593 1.26799 0.92119 1.25965 0.94437 0.99876 0.97818 1.70782 1.18338 1.37883 1.26486 0.83448 0.75422 0.75013 0.75894 1.21232 1.21127 1.21155 1.21280 1.02332 0.90435 0.94280 0.92627 0.91908 0.91652 0.89133 0.90212 0.89032 0.89137 0.91652 0.88362 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.89 37.16 0.37 -1.51 16 2 C -0.04 -0.58 6.55 -27.88 -0.18 -0.76 16 3 C 0.08 1.36 6.83 -80.37 -0.55 0.81 16 4 N -0.38 -6.99 12.04 34.68 0.42 -6.58 16 5 O 0.09 1.66 11.04 21.43 0.24 1.90 16 6 C 0.06 1.12 7.60 -34.13 -0.26 0.86 16 7 C -0.32 -6.10 6.46 -103.67 -0.67 -6.77 16 8 C 0.43 8.54 7.09 -30.29 -0.21 8.33 16 9 O -0.47 -9.86 17.99 5.52 0.10 -9.77 16 10 C -0.14 -2.77 5.42 -26.94 -0.15 -2.92 16 11 C 0.04 0.87 1.74 -91.55 -0.16 0.72 16 12 H 0.04 1.04 6.65 -51.93 -0.35 0.70 16 13 C -0.60 -14.48 8.27 -34.44 -0.28 -14.76 16 14 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 15 C 0.03 0.64 5.45 -17.82 -0.10 0.54 16 16 N -0.90 -24.56 13.62 55.43 0.76 -23.80 16 17 Si 1.07 22.75 29.91 -169.99 -5.08 17.66 16 18 H -0.29 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.29 -5.96 7.11 56.52 0.40 -5.55 16 20 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 21 C -0.04 -0.86 5.50 -27.94 -0.15 -1.01 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 28 H 0.09 1.59 8.14 -51.94 -0.42 1.17 16 29 H 0.27 7.35 6.63 -40.82 -0.27 7.08 16 30 H 0.10 1.74 8.13 -51.93 -0.42 1.31 16 31 H 0.09 1.85 8.12 -51.93 -0.42 1.43 16 LS Contribution 271.05 15.07 4.08 4.08 Total: -1.00 -27.49 271.05 -5.46 -32.95 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -3.62 Total: 0.02 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.35 Total: -16.47 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 1.17 Total: -30.38 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.34 Total: -7.87 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.08 Total: 17.66 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.49 -5.46 -32.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824888.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.781 kcal (2) G-P(sol) polarization free energy of solvation -27.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds