Wall clock time and date at job start Mon Mar 30 2020 03:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00256 * 2 1 4 4 H 1.48506 * 109.47026 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47098 * 300.00443 * 3 2 1 6 6 H 1.48503 * 109.46952 * 60.00478 * 3 2 1 7 7 C 1.37882 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47230 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.36032 * 55.71662 * 10 9 7 12 12 C 1.54452 * 110.31871 * 177.88997 * 10 9 7 13 13 O 1.44887 * 102.93345 * 140.65798 * 12 10 9 14 14 C 1.44393 * 103.20482 * 323.46671 * 13 12 10 15 15 H 1.08996 * 110.11255 * 279.93392 * 14 13 12 16 16 C 1.50703 * 110.11462 * 158.35313 * 14 13 12 17 17 C 1.38675 * 120.41865 * 62.29489 * 16 14 13 18 18 C 1.38629 * 118.41929 * 179.72534 * 17 16 14 19 19 C 1.38221 * 119.16236 * 0.02562 * 18 17 16 20 20 N 1.31861 * 120.76536 * 359.97438 * 19 18 17 21 21 C 1.31888 * 121.72133 * 0.02562 * 20 19 18 22 22 O 1.43780 * 106.22356 * 39.14463 * 14 13 12 23 23 H 0.96996 * 119.99329 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47326 * 60.00477 * 9 7 2 25 25 H 1.08998 * 109.47271 * 300.00477 * 9 7 2 26 26 H 1.09008 * 110.72544 * 259.04905 * 12 10 9 27 27 H 1.08996 * 110.73190 * 22.16578 * 12 10 9 28 28 H 1.08003 * 120.78833 * 359.74916 * 17 16 14 29 29 H 1.07998 * 120.41815 * 179.97438 * 18 17 16 30 30 H 1.07992 * 119.62125 * 179.97438 * 19 18 17 31 31 H 1.08003 * 119.61498 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 1 2.9291 -3.5764 0.8438 12 6 1.4934 -5.0104 0.0528 13 8 2.2640 -5.8471 -0.8446 14 6 2.6602 -4.9327 -1.8895 15 1 1.8391 -4.7870 -2.5912 16 6 3.8707 -5.4649 -2.6124 17 6 3.8051 -6.6667 -3.3012 18 6 4.9418 -7.1145 -3.9564 19 6 6.0946 -6.3540 -3.9013 20 7 6.1205 -5.2156 -3.2364 21 6 5.0585 -4.7589 -2.6016 22 8 2.9796 -3.6917 -1.2375 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6246 -2.5570 0.8896 26 1 1.5028 -5.4175 1.0639 27 1 0.4706 -4.8963 -0.3062 28 1 2.8901 -7.2399 -3.3269 29 1 4.9269 -8.0463 -4.5023 30 1 6.9845 -6.6960 -4.4087 31 1 5.1176 -3.8219 -2.0678 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004099.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:12 Heat of formation + Delta-G solvation = -57.977929 kcal Electronic energy + Delta-G solvation = -16153.848517 eV Core-core repulsion = 13400.328921 eV Total energy + Delta-G solvation = -2753.519596 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.45734 -39.36921 -34.70276 -33.45836 -32.69510 -31.72361 -30.22503 -26.91945 -25.19632 -23.61692 -23.04730 -21.79619 -20.56185 -17.41551 -16.91079 -16.43858 -16.17774 -15.68852 -15.37151 -14.83848 -14.47550 -13.66299 -13.61997 -13.30105 -13.03548 -12.89238 -12.13642 -11.97405 -11.80954 -11.41922 -11.17752 -10.59856 -10.51326 -10.04214 -9.91441 -9.77127 -9.40692 -9.16514 -9.03705 -8.83098 -8.41868 -6.04278 -4.05188 1.09038 1.29773 3.31540 3.39258 3.45024 3.73249 4.06543 4.10052 4.45028 4.56300 4.85061 4.99431 5.09978 5.17538 5.28548 5.32457 5.37769 5.50678 5.53425 5.78699 5.86043 6.03570 6.11778 6.27100 6.37042 6.67444 6.74568 7.24793 7.52318 7.68598 7.93479 8.02266 8.33501 8.99661 9.58660 11.07406 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.032667 B = 0.006244 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.923408 B = 4483.334208 C = 5136.432210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.061 3.939 11 H 0.083 0.917 12 C 0.016 3.984 13 O -0.382 6.382 14 C 0.273 3.727 15 H 0.083 0.917 16 C -0.142 4.142 17 C -0.053 4.053 18 C -0.182 4.182 19 C 0.096 3.904 20 N -0.489 5.489 21 C 0.135 3.865 22 O -0.362 6.362 23 H 0.260 0.740 24 H 0.024 0.976 25 H 0.032 0.968 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.154 0.846 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.616 -13.478 -5.242 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.004 3.996 11 H 0.101 0.899 12 C -0.061 4.061 13 O -0.303 6.303 14 C 0.177 3.823 15 H 0.100 0.900 16 C -0.144 4.144 17 C -0.080 4.080 18 C -0.202 4.202 19 C -0.061 4.061 20 N -0.197 5.197 21 C -0.022 4.022 22 O -0.282 6.282 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.119 0.881 27 H 0.094 0.906 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.171 0.829 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.442 -12.941 -5.279 15.389 hybrid contribution -0.694 0.440 -0.008 0.822 sum 5.748 -12.501 -5.287 14.740 Atomic orbital electron populations 1.69961 1.06067 1.26628 1.51165 1.25003 0.94854 0.99362 0.95295 0.86495 0.80258 0.83551 0.77511 1.19593 1.21029 1.21065 1.21131 0.93281 0.90306 1.50051 0.92161 1.19475 0.93273 0.91471 0.98136 1.23897 0.94369 0.95401 0.85896 0.89872 1.24503 0.96121 0.90440 0.95013 1.89381 1.71176 1.33060 1.36681 1.22684 0.92043 0.78337 0.89249 0.89974 1.20791 0.96633 0.96767 1.00215 1.21357 0.98971 0.94259 0.93364 1.22057 0.94210 1.01815 1.02102 1.22828 0.97552 0.90435 0.95239 1.67840 1.30121 1.13770 1.08009 1.22854 0.86666 0.99335 0.93325 1.88949 1.68794 1.35507 1.34995 0.93019 0.95738 0.94950 0.88113 0.90589 0.84666 0.84768 0.82901 0.81275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.19 8.94 -34.44 -0.31 -14.49 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 9 C 0.01 0.33 4.60 -27.88 -0.13 0.20 16 10 C 0.06 1.24 3.68 -25.97 -0.10 1.14 16 11 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 12 C 0.02 0.26 7.36 37.92 0.28 0.54 16 13 O -0.38 -6.52 11.46 -59.28 -0.68 -7.20 16 14 C 0.27 4.71 4.20 36.01 0.15 4.86 16 15 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 16 C -0.14 -2.22 5.59 -104.48 -0.58 -2.81 16 17 C -0.05 -0.68 9.83 -39.28 -0.39 -1.07 16 18 C -0.18 -1.99 10.11 -39.44 -0.40 -2.39 16 19 C 0.10 1.17 11.18 -17.55 -0.20 0.97 16 20 N -0.49 -7.56 10.36 -13.25 -0.14 -7.69 16 21 C 0.13 2.21 10.56 -17.55 -0.19 2.03 16 22 O -0.36 -7.45 9.32 -59.28 -0.55 -8.00 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.10 1.42 8.14 -51.92 -0.42 1.00 16 27 H 0.08 1.21 7.86 -51.93 -0.41 0.80 16 28 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 29 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.17 2.92 7.05 -52.48 -0.37 2.55 16 LS Contribution 272.64 15.07 4.11 4.11 Total: -1.00 -31.31 272.64 -7.20 -38.50 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.70 Total: -1.13 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.95 Total: -9.54 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.60 Total: -33.45 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -1.23 Total: -15.20 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.31 -7.20 -38.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004099.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.477 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds